{"id":"https://openalex.org/W4406281818","doi":"https://doi.org/10.1093/bib/bbae710","title":"PbsNRs: predict the potential binders and scaffolds for nuclear receptors","display_name":"PbsNRs: predict the potential binders and scaffolds for nuclear receptors","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4406281818","doi":"https://doi.org/10.1093/bib/bbae710","pmid":"https://pubmed.ncbi.nlm.nih.gov/39798999"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae710","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae710","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016093003","display_name":"Genhui Zheng","orcid":"https://orcid.org/0000-0001-5380-2435"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Genhui Zheng","raw_affiliation_strings":["Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,","Oden Institute for Computational Engineering and Sciences (ICES), University of Texas at Austin , No. 201 East 24th Street, Austin 78712, TX ,"],"raw_orcid":"https://orcid.org/0000-0001-5380-2435","affiliations":[{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I4210127074"]},{"raw_affiliation_string":"Oden Institute for Computational Engineering and Sciences (ICES), University of Texas at Austin , No. 201 East 24th Street, Austin 78712, TX ,","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022846353","display_name":"Dingfeng Wu","orcid":"https://orcid.org/0000-0002-9287-122X"},"institutions":[{"id":"https://openalex.org/I4210126592","display_name":"National Clinical Research","ror":"https://ror.org/03ddkvp86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210126592"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Dingfeng Wu","raw_affiliation_strings":["National Center, Children\u2019s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health , No. 3333 Binsheng Road, Hangzhou 310052 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center, Children\u2019s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health , No. 3333 Binsheng Road, Hangzhou 310052 ,","institution_ids":["https://openalex.org/I4210126592","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021379803","display_name":"Xiuxia Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiuxia Wei","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006931854","display_name":"Dongpo Xu","orcid":"https://orcid.org/0000-0002-9311-9152"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongpo Xu","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058727922","display_name":"Tiantian Mao","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tiantian Mao","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101543687","display_name":"Deyu Yan","orcid":"https://orcid.org/0000-0003-0511-1423"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deyu Yan","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101619384","display_name":"Wenhao Han","orcid":"https://orcid.org/0009-0009-8995-3417"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Han","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109597163","display_name":"Xiaoxiao Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Xiaoxiao Shang","raw_affiliation_strings":["Department of Mathematics and Statistics, McGill University , 805 Sherbrooke Street West, Montreal H3A 0B9, Quebec ,","Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, McGill University , 805 Sherbrooke Street West, Montreal H3A 0B9, Quebec ,","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I4210127074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025824591","display_name":"Zikun Chen","orcid":"https://orcid.org/0000-0002-5430-6596"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zikun Chen","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061840111","display_name":"Jingxuan Qiu","orcid":"https://orcid.org/0000-0001-8420-4593"},"institutions":[{"id":"https://openalex.org/I148128674","display_name":"University of Shanghai for Science and Technology","ror":"https://ror.org/00ay9v204","country_code":"CN","type":"education","lineage":["https://openalex.org/I148128674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingxuan Qiu","raw_affiliation_strings":["School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,"],"raw_orcid":"https://orcid.org/0000-0001-8420-4593","affiliations":[{"raw_affiliation_string":"School of Health Science and Engineering, University of Shanghai for Science and Technology , No. 516 Jungong Road, Yangpu District, Shanghai 200093 ,","institution_ids":["https://openalex.org/I148128674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060948898","display_name":"Kailin Tang","orcid":"https://orcid.org/0000-0002-0508-6056"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kailin Tang","raw_affiliation_strings":["School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences and Technology, Tongji University , No. 1239 Siping Road, Shanghai 200092 ,","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025886127","display_name":"Zhiwei Cao","orcid":"https://orcid.org/0000-0002-0341-8213"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiwei Cao","raw_affiliation_strings":["Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I4210127074"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029170473","display_name":"Tianyi Qiu","orcid":"https://orcid.org/0000-0003-2619-0298"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210127074","display_name":"Zhongshan Hospital","ror":"https://ror.org/032x22645","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210127074"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianyi Qiu","raw_affiliation_strings":["Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,"],"raw_orcid":"https://orcid.org/0000-0003-2619-0298","affiliations":[{"raw_affiliation_string":"Institute of Clinical Science, Zhongshan Hospital, Shanghai Medical College, Shanghai Institute of Infectious Disease and Biosecurity, Intelligent Medicine Institute, School of Life Sciences, Fudan University , No. 180 Fenglin Road, Shanghai 200032 ,","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I4210127074"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5016093003"],"corresponding_institution_ids":["https://openalex.org/I133868755","https://openalex.org/I4210127074","https://openalex.org/I86519309"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28768538,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8578091859817505},{"id":"https://openalex.org/keywords/receiver-operating-characteristic","display_name":"Receiver operating characteristic","score":0.5813286304473877},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.46210774779319763},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4521035850048065},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.4407031536102295},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.43770498037338257},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3235950469970703},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3181149661540985},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.28342875838279724},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23028337955474854},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.20725375413894653},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20427370071411133},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19471552968025208},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12878406047821045}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8578091859817505},{"id":"https://openalex.org/C58471807","wikidata":"https://www.wikidata.org/wiki/Q327120","display_name":"Receiver operating characteristic","level":2,"score":0.5813286304473877},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.46210774779319763},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4521035850048065},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.4407031536102295},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.43770498037338257},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3235950469970703},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3181149661540985},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.28342875838279724},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23028337955474854},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.20725375413894653},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20427370071411133},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19471552968025208},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12878406047821045}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D018160","descriptor_name":"Receptors, Cytoplasmic and Nuclear","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae710","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39798999","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39798999","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11724720","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11724720","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11724720/pdf/bbae710.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae710","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae710","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4699999988079071,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G5372691491","display_name":null,"funder_award_id":"1350219165","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6754032852","display_name":null,"funder_award_id":"2023YFC3404000","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G906612804","display_name":null,"funder_award_id":"32370697","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":88,"referenced_works":["https://openalex.org/W580370566","https://openalex.org/W1962046992","https://openalex.org/W1966064283","https://openalex.org/W1975420361","https://openalex.org/W1975538973","https://openalex.org/W1975623001","https://openalex.org/W1982131304","https://openalex.org/W1984084871","https://openalex.org/W1984936544","https://openalex.org/W1996630442","https://openalex.org/W2005518172","https://openalex.org/W2031082559","https://openalex.org/W2031906658","https://openalex.org/W2042043080","https://openalex.org/W2050847085","https://openalex.org/W2057521072","https://openalex.org/W2068819452","https://openalex.org/W2071472412","https://openalex.org/W2085124463","https://openalex.org/W2087064593","https://openalex.org/W2098972483","https://openalex.org/W2099252399","https://openalex.org/W2106440817","https://openalex.org/W2111581388","https://openalex.org/W2122863289","https://openalex.org/W2130479394","https://openalex.org/W2133712572","https://openalex.org/W2135007932","https://openalex.org/W2153838454","https://openalex.org/W2155958387","https://openalex.org/W2159887157","https://openalex.org/W2161607603","https://openalex.org/W2169678694","https://openalex.org/W2170969811","https://openalex.org/W2171656814","https://openalex.org/W2191378904","https://openalex.org/W2224175912","https://openalex.org/W2268071782","https://openalex.org/W2295730657","https://openalex.org/W2323299231","https://openalex.org/W2336207313","https://openalex.org/W2346278979","https://openalex.org/W2413757337","https://openalex.org/W2490420619","https://openalex.org/W2523362814","https://openalex.org/W2550812444","https://openalex.org/W2554099577","https://openalex.org/W2558217333","https://openalex.org/W2575732134","https://openalex.org/W2588130051","https://openalex.org/W2598803157","https://openalex.org/W2753953057","https://openalex.org/W2765333863","https://openalex.org/W2767891136","https://openalex.org/W2783048272","https://openalex.org/W2784213390","https://openalex.org/W2790674462","https://openalex.org/W2798950799","https://openalex.org/W2803627340","https://openalex.org/W2810164612","https://openalex.org/W2860192827","https://openalex.org/W2888847188","https://openalex.org/W2898368038","https://openalex.org/W2900090807","https://openalex.org/W2920795827","https://openalex.org/W2923277913","https://openalex.org/W2946658635","https://openalex.org/W2946679128","https://openalex.org/W2951765624","https://openalex.org/W2952282876","https://openalex.org/W2972743052","https://openalex.org/W2974531988","https://openalex.org/W2987225062","https://openalex.org/W3005064662","https://openalex.org/W3087326809","https://openalex.org/W3087418839","https://openalex.org/W3098189759","https://openalex.org/W3099091911","https://openalex.org/W3101412626","https://openalex.org/W3168436232","https://openalex.org/W3208898778","https://openalex.org/W3216660278","https://openalex.org/W4205519906","https://openalex.org/W4226079108","https://openalex.org/W4293023486","https://openalex.org/W4310241516","https://openalex.org/W4388297464","https://openalex.org/W7006806681"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W4361305867"],"abstract_inverted_index":{"Nuclear":[0,55],"receptors":[1],"(NRs)":[2],"are":[3,17,34,42],"a":[4,57,92],"class":[5],"of":[6,13,75],"essential":[7,176],"proteins":[8],"that":[9,89],"regulate":[10],"the":[11,48,64,113,116,147,175,181],"expression":[12],"specific":[14],"genes":[15],"and":[16,52,68,84,110,118,129,150,179],"associated":[18],"with":[19,30],"multiple":[20,185],"diseases.":[21,187],"In":[22],"silico":[23],"methods":[24],"for":[25,37,54,96,139,154,184],"prescreening":[26],"potential":[27,65,167],"NR":[28,66,169],"binders":[29,51,67,170],"predictive":[31],"binding":[32],"ability":[33],"highly":[35],"desired":[36],"NR-related":[38,186],"drug":[39,182],"development":[40],"but":[41,171],"rarely":[43],"reported.":[44],"Here,":[45],"we":[46],"present":[47],"PbsNRs":[49,76,90,132,161,189],"(Predicting":[50],"scaffolds":[53,69,138],"Receptors),":[56],"user-friendly":[58],"web":[59,190],"server":[60,191],"designed":[61],"to":[62],"predict":[63],"through":[70],"proteochemometric":[71],"modeling.":[72],"The":[73,188],"utility":[74],"was":[77],"systemically":[78],"evaluated":[79],"using":[80,159],"both":[81,125],"chemical":[82,97,137],"compounds":[83,98],"natural":[85,144,152],"products.":[86,145],"Results":[87],"indicated":[88],"achieved":[91],"good":[93],"prediction":[94],"performance":[95],"on":[99],"internal":[100],"(ROC-AUC":[101,120],"=":[102,121],"0.906,":[103],"where":[104],"ROC":[105],"is":[106,112,192],"Receiver-Operating":[107],"Characteristic":[108],"curve":[109],"AUC":[111],"Area":[114],"Under":[115],"Curve)":[117],"external":[119],"0.783)":[122],"datasets,":[123],"outperforming":[124],"compound-ligand":[126],"interaction":[127],"tools":[128],"NR-specific":[130],"predictors.":[131],"also":[133,172],"successfully":[134],"identified":[135],"bioactive":[136,149],"NRs":[140],"by":[141],"screening":[142,166],"massive":[143],"Moreover,":[146],"predicted":[148],"inactive":[151],"products":[153],"NR2B1":[155],"were":[156],"experimentally":[157],"validated":[158],"biosensors.":[160],"not":[162],"only":[163],"aids":[164],"in":[165],"therapeutic":[168],"helps":[173],"discover":[174],"molecular":[177],"scaffold":[178],"guide":[180],"discovery":[183],"available":[193],"at":[194],"http://pbsnrs.badd-cao.net.":[195]},"counts_by_year":[],"updated_date":"2026-05-24T08:33:08.758527","created_date":"2025-10-10T00:00:00"}
