{"id":"https://openalex.org/W4406116334","doi":"https://doi.org/10.1093/bib/bbae702","title":"RiceSNP-ABST: a deep learning approach to identify abiotic stress-associated single nucleotide polymorphisms in rice","display_name":"RiceSNP-ABST: a deep learning approach to identify abiotic stress-associated single nucleotide polymorphisms in rice","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4406116334","doi":"https://doi.org/10.1093/bib/bbae702","pmid":"https://pubmed.ncbi.nlm.nih.gov/39757606"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae702","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae702","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102202779","display_name":"Quan Lu","orcid":"https://orcid.org/0009-0004-6802-0443"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Lu","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0009-0004-6802-0443","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jiajun Xu","orcid":"https://orcid.org/0009-0008-0712-0167"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajun Xu","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0009-0008-0712-0167","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048805069","display_name":"Renyi Zhang","orcid":"https://orcid.org/0000-0002-3647-1416"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Renyi Zhang","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065431628","display_name":"Hangcheng Liu","orcid":"https://orcid.org/0000-0002-3198-559X"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hangcheng Liu","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377219","display_name":"Meng Wang","orcid":"https://orcid.org/0000-0003-0928-9691"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Wang","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101416654","display_name":"Xiaoshuang Liu","orcid":"https://orcid.org/0000-0002-8829-7245"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoshuang Liu","raw_affiliation_strings":["Research Center for Biological Breeding Technology , Advance Academy, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Biological Breeding Technology , Advance Academy, Anhui Agricultural University, 130, Changjiang West Road, Hefei, Anhui Province 230036,","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044447237","display_name":"Zhenyu Yue","orcid":"https://orcid.org/0000-0002-9370-2540"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Yue","raw_affiliation_strings":["Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0000-0002-9370-2540","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019838907","display_name":"Yujia Gao","orcid":"https://orcid.org/0000-0001-6090-3090"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujia Gao","raw_affiliation_strings":["Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7958,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73158482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6309023499488831},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5185118913650513},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5160338878631592},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4867136776447296},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4823169708251953},{"id":"https://openalex.org/keywords/abiotic-stress","display_name":"Abiotic stress","score":0.4369059205055237},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.43086352944374084},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36454689502716064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34617340564727783},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2205556333065033},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.11671188473701477},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07815834879875183}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6309023499488831},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5185118913650513},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5160338878631592},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4867136776447296},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4823169708251953},{"id":"https://openalex.org/C89519541","wikidata":"https://www.wikidata.org/wiki/Q4667893","display_name":"Abiotic stress","level":3,"score":0.4369059205055237},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.43086352944374084},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36454689502716064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34617340564727783},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2205556333065033},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.11671188473701477},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07815834879875183},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae702","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39757606","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39757606","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11962596","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11962596","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11962596/pdf/bbae702.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae702","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae702","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2543759693","display_name":null,"funder_award_id":"62472005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6253636927","display_name":null,"funder_award_id":"62102004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323887","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W569478347","https://openalex.org/W1019830208","https://openalex.org/W1700449338","https://openalex.org/W1709815505","https://openalex.org/W1909700405","https://openalex.org/W1931354685","https://openalex.org/W1984643518","https://openalex.org/W1988086016","https://openalex.org/W1998015678","https://openalex.org/W2045966516","https://openalex.org/W2069520341","https://openalex.org/W2080002401","https://openalex.org/W2087058596","https://openalex.org/W2103291381","https://openalex.org/W2109062944","https://openalex.org/W2109181019","https://openalex.org/W2119717200","https://openalex.org/W2155844132","https://openalex.org/W2170747616","https://openalex.org/W2558561667","https://openalex.org/W2735099323","https://openalex.org/W2805361563","https://openalex.org/W2810225085","https://openalex.org/W2891420113","https://openalex.org/W2900694973","https://openalex.org/W2905629607","https://openalex.org/W2936599975","https://openalex.org/W2951189885","https://openalex.org/W2952239877","https://openalex.org/W2978057278","https://openalex.org/W2980744026","https://openalex.org/W2981502071","https://openalex.org/W3004706073","https://openalex.org/W3024086681","https://openalex.org/W3026425509","https://openalex.org/W3034527519","https://openalex.org/W3084754935","https://openalex.org/W3088604517","https://openalex.org/W3111392271","https://openalex.org/W3127238141","https://openalex.org/W3129125493","https://openalex.org/W3131121088","https://openalex.org/W3139240024","https://openalex.org/W3152443338","https://openalex.org/W3160988990","https://openalex.org/W3179235883","https://openalex.org/W3194128048","https://openalex.org/W3216049487","https://openalex.org/W4211064437","https://openalex.org/W4212836002","https://openalex.org/W4213355816","https://openalex.org/W4225671220","https://openalex.org/W4284886117","https://openalex.org/W4306871112","https://openalex.org/W4308775252","https://openalex.org/W4315864628","https://openalex.org/W4319163914","https://openalex.org/W4382918871","https://openalex.org/W4387583200","https://openalex.org/W4388033280","https://openalex.org/W4390599059","https://openalex.org/W4391575638","https://openalex.org/W4391693196","https://openalex.org/W4391741255","https://openalex.org/W4393153100","https://openalex.org/W4399901082","https://openalex.org/W4402074130","https://openalex.org/W4402203024","https://openalex.org/W6859531326"],"related_works":["https://openalex.org/W4391621807","https://openalex.org/W2335257745","https://openalex.org/W2070581548","https://openalex.org/W4321487865","https://openalex.org/W2391388634","https://openalex.org/W4313906399","https://openalex.org/W4391621790","https://openalex.org/W4239306820","https://openalex.org/W4391266461","https://openalex.org/W2590798552"],"abstract_inverted_index":{"Given":[0],"the":[1,11,49,168,182,205,223],"adverse":[2],"effects":[3],"faced":[4],"by":[5,153],"rice":[6,28,34,46,60,106,171],"due":[7],"to":[8,42,72,165,203,212],"abiotic":[9,23,43],"stresses,":[10],"precise":[12],"and":[13,54,62,110,178,185,193],"rapid":[14],"identification":[15],"of":[16,38,51],"single":[17],"nucleotide":[18],"polymorphisms":[19],"(SNPs)":[20],"associated":[21],"with":[22,160],"stress":[24,44],"traits":[25],"(ABST-SNPs)":[26],"in":[27,45,75,85,105,124],"is":[29,107,119],"crucial":[30],"for":[31,102,121,136,222],"developing":[32,99],"resistant":[33],"varieties.":[35],"The":[36,219],"scarcity":[37],"high-quality":[39],"data":[40],"related":[41],"has":[47],"hindered":[48],"development":[50],"computational":[52],"models":[53,101],"constrained":[55],"research":[56],"efforts":[57],"aimed":[58],"at":[59,228],"improvement":[61],"breeding.":[63],"Genome-wide":[64],"association":[65],"studies":[66],"provide":[67],"a":[68,115,133],"better":[69],"statistical":[70],"power":[71],"consider":[73],"ABST-SNPs":[74,104,123],"rice.":[76,125],"Meanwhile,":[77],"deep":[78],"learning":[79,177,200],"methods":[80,144,180],"have":[81,92],"shown":[82],"their":[83],"capability":[84],"predicting":[86,122],"disease-":[87],"or":[88],"phenotype-associated":[89],"loci,":[90],"but":[91],"primarily":[93],"focused":[94],"on":[95,148,181,189],"human":[96],"species.":[97],"Therefore,":[98],"predictive":[100],"identifying":[103],"both":[108],"urgent":[109],"valuable.":[111],"In":[112],"this":[113],"paper,":[114],"model":[116],"called":[117],"RiceSNP-ABST":[118,173,224],"proposed":[120,146],"Firstly,":[126],"six":[127],"training":[128],"datasets":[129],"were":[130,145,163],"generated":[131],"using":[132],"novel":[134],"strategy":[135],"negative":[137],"sample":[138],"construction.":[139],"Secondly,":[140],"four":[141],"feature":[142,154],"encoding":[143],"based":[147],"DNA":[149,208],"sequence":[150],"fragments,":[151],"followed":[152],"selection.":[155],"Finally,":[156],"convolutional":[157],"neural":[158],"networks":[159],"residual":[161],"connections":[162],"used":[164],"determine":[166],"whether":[167],"sequences":[169],"contained":[170],"ABST-SNPs.":[172],"outperformed":[174],"traditional":[175],"machine":[176],"state-of-the-art":[179],"benchmark":[183],"dataset":[184,192],"demonstrated":[186],"consistent":[187],"generalization":[188],"an":[190],"independent":[191],"cross-species":[194],"datasets.":[195],"Notably,":[196],"multi-granularity":[197],"causal":[198],"structure":[199],"was":[201],"employed":[202],"elucidate":[204],"relationships":[206],"among":[207],"structural":[209],"features,":[210],"aiming":[211],"identify":[213],"key":[214],"genetic":[215],"variants":[216],"more":[217],"effectively.":[218],"web-based":[220],"tool":[221],"can":[225],"be":[226],"accessed":[227],"http://rice-snp-abst.aielab.cc.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
