{"id":"https://openalex.org/W4405905366","doi":"https://doi.org/10.1093/bib/bbae688","title":"RNA-ModX: a multilabel prediction and interpretation framework for RNA modifications","display_name":"RNA-ModX: a multilabel prediction and interpretation framework for RNA modifications","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405905366","doi":"https://doi.org/10.1093/bib/bbae688","pmid":"https://pubmed.ncbi.nlm.nih.gov/39737566"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae688","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae688","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034098740","display_name":"Chelsea Chen Yuge","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chelsea Chen Yuge","raw_affiliation_strings":["NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115707316","display_name":"Ee Soon Hang","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Ee Soon Hang","raw_affiliation_strings":["NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072929989","display_name":"Madasamy Ravi Nadar Mamtha","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Madasamy Ravi Nadar Mamtha","raw_affiliation_strings":["NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109630546","display_name":"Shashikant Vishwakarma","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Shashikant Vishwakarma","raw_affiliation_strings":["NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321896","display_name":"Sijia Wang","orcid":"https://orcid.org/0009-0003-2340-5123"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sijia Wang","raw_affiliation_strings":["NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NUS-ISS, National University of Singapore, 25 Heng Mui Keng Terrace, 119615, Singapore ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036938086","display_name":"Chengen Wang","orcid":"https://orcid.org/0000-0001-5772-2029"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheng Wang","raw_affiliation_strings":["Independent Researcher , Singapore ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Independent Researcher , Singapore ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066420667","display_name":"Nguyen Quoc Khanh Le","orcid":"https://orcid.org/0000-0003-4896-7926"},"institutions":[{"id":"https://openalex.org/I2802331550","display_name":"Taipei Medical University Hospital","ror":"https://ror.org/03k0md330","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2802331550"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]},{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["CA","TW"],"is_corresponding":false,"raw_author_name":"Nguyen Quoc Khanh Le","raw_affiliation_strings":["AIBioMed Research Group, Taipei Medical University , 250 Wuxing Street, 110, Taipei ,","In-Service Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University , 250 Wuxing Street, 110, Taipei ,","Translational Imaging Research Center, Taipei Medical University Hospital , 252 Wuxing Street, 110, Taipei ,"],"raw_orcid":"https://orcid.org/0000-0003-4896-7926","affiliations":[{"raw_affiliation_string":"AIBioMed Research Group, Taipei Medical University , 250 Wuxing Street, 110, Taipei ,","institution_ids":["https://openalex.org/I47519274"]},{"raw_affiliation_string":"In-Service Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University , 250 Wuxing Street, 110, Taipei ,","institution_ids":["https://openalex.org/I4210164862","https://openalex.org/I47519274"]},{"raw_affiliation_string":"Translational Imaging Research Center, Taipei Medical University Hospital , 252 Wuxing Street, 110, Taipei ,","institution_ids":["https://openalex.org/I2802331550"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.3171,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.80457883,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.6221580505371094},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.594851016998291},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5914234519004822},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46710649132728577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42979276180267334},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3593648076057434},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17913010716438293},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14797106385231018},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12957248091697693},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0756412148475647}],"concepts":[{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.6221580505371094},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.594851016998291},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5914234519004822},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46710649132728577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42979276180267334},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3593648076057434},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17913010716438293},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14797106385231018},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12957248091697693},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0756412148475647}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae688","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39737566","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39737566","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11684893","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11684893","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11684893/pdf/bbae688.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae688","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae688","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6183517946","display_name":null,"funder_award_id":"MOST111-2628-E-038-002-MY3","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"}],"funders":[{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W2004132756","https://openalex.org/W2106474670","https://openalex.org/W2512477880","https://openalex.org/W2589945527","https://openalex.org/W2627064270","https://openalex.org/W2805813857","https://openalex.org/W2884418830","https://openalex.org/W2921372942","https://openalex.org/W2955112981","https://openalex.org/W2988273873","https://openalex.org/W3012685647","https://openalex.org/W3049580963","https://openalex.org/W3131672097","https://openalex.org/W3133117790","https://openalex.org/W3134163647","https://openalex.org/W3164597438","https://openalex.org/W3174760894","https://openalex.org/W3174855653","https://openalex.org/W3203684982","https://openalex.org/W3212684988","https://openalex.org/W4220921877","https://openalex.org/W4280639694","https://openalex.org/W4306939527","https://openalex.org/W4327722669","https://openalex.org/W4365515267","https://openalex.org/W4375843304","https://openalex.org/W4379209740","https://openalex.org/W4379930006","https://openalex.org/W4383506054"],"related_works":["https://openalex.org/W4313320911","https://openalex.org/W4327743144","https://openalex.org/W4245077728","https://openalex.org/W2607424049","https://openalex.org/W4390922876","https://openalex.org/W3183204001","https://openalex.org/W4206302830","https://openalex.org/W2185941092","https://openalex.org/W4386782890","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Accurate":[0],"prediction":[1,222],"of":[2,58,114,130,149,200,219],"RNA":[3,10,33,82,175,220],"modifications":[4],"holds":[5],"profound":[6],"implications":[7],"for":[8,42,170],"elucidating":[9],"function":[11],"and":[12,70,93,110,147,217],"mechanism,":[13],"with":[14,112,123,155,204],"potential":[15],"applications":[16],"in":[17,182,194,213],"drug":[18],"development.":[19],"Here,":[20],"the":[21,52,85,119,127,145,150,156,179,183,192,215,225],"RNA-ModX":[22,53],"presents":[23],"a":[24,37,56,79,159,195,205,209],"highly":[25],"precise":[26],"predictive":[27,202],"model":[28,74,131,157,180],"designed":[29],"to":[30,140,172,191],"forecast":[31],"post-transcriptional":[32],"modifications,":[34],"complemented":[35],"by":[36,45,224],"user-friendly":[38,160],"web":[39,161],"application":[40,162],"tailored":[41],"seamless":[43],"utilization":[44,218],"future":[46],"researchers.":[47],"To":[48],"achieve":[49],"exceptional":[50],"accuracy,":[51],"systematically":[54],"explored":[55],"range":[57],"machine":[59],"learning":[60],"models,":[61],"including":[62],"Long":[63],"Short-Term":[64],"Memory":[65],"(LSTM),":[66],"Gated":[67],"Recurrent":[68],"Unit,":[69],"Transformer-based":[71],"architectures.":[72],"The":[73],"underwent":[75],"rigorous":[76],"testing":[77],"using":[78],"dataset":[80],"comprising":[81],"sequences":[83,113],"containing":[84],"four":[86],"fundamental":[87],"nucleotides":[88],"(A,":[89],"C,":[90],"G,":[91],"U)":[92],"spanning":[94],"12":[95],"prevalent":[96],"modification":[97,221],"classes":[98],"(m6A,":[99],"m1A,":[100],"m5C,":[101],"m5U,":[102],"m6Am,":[103],"m7G,":[104],"\u03a8,":[105],"I,":[106],"Am,":[107],"Cm,":[108],"Gm,":[109],"Um),":[111],"length":[115],"1001":[116],"nucleotides.":[117],"Notably,":[118],"LSTM":[120],"model,":[121],"augmented":[122],"3-mer":[124],"encoding,":[125],"demonstrated":[126],"highest":[128],"level":[129],"accuracy.":[132],"Furthermore,":[133],"Local":[134],"Interpretable":[135],"Model-Agnostic":[136],"Explanations":[137],"were":[138],"employed":[139],"facilitate":[141],"result":[142],"interpretation,":[143],"enhancing":[144],"transparency":[146],"interpretability":[148],"model's":[151],"predictions.":[152],"In":[153],"conjunction":[154],"development,":[158],"was":[163],"meticulously":[164],"crafted,":[165],"featuring":[166],"an":[167],"intuitive":[168],"interface":[169,207],"researchers":[171],"effortlessly":[173],"upload":[174],"sequences.":[176],"Upon":[177],"submission,":[178],"executes":[181],"backend,":[184],"generating":[185],"predictions":[186],"which":[187],"are":[188],"seamlessly":[189],"presented":[190],"user":[193],"coherent":[196],"manner.":[197],"This":[198],"integration":[199],"cutting-edge":[201],"modeling":[203],"user-centric":[206],"signifies":[208],"significant":[210],"step":[211],"forward":[212],"facilitating":[214],"exploration":[216],"technologies":[223],"broader":[226],"research":[227],"community.":[228]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
