{"id":"https://openalex.org/W4406037031","doi":"https://doi.org/10.1093/bib/bbae680","title":"kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes","display_name":"kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4406037031","doi":"https://doi.org/10.1093/bib/bbae680","pmid":"https://pubmed.ncbi.nlm.nih.gov/39749666"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae680","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae680/61321504/bbae680.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae680/61321504/bbae680.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052699596","display_name":"Giuseppe Defazio","orcid":"https://orcid.org/0000-0002-9356-5224"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Defazio","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,"],"raw_orcid":"https://orcid.org/0000-0002-9356-5224","affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013315777","display_name":"M. A. Tangaro","orcid":"https://orcid.org/0000-0003-3923-2266"},"institutions":[{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Antonio Tangaro","raw_affiliation_strings":["Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche , Via G. Amendola 122/O, 70125, Bari ,"],"raw_orcid":"https://orcid.org/0000-0003-3923-2266","affiliations":[{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche , Via G. Amendola 122/O, 70125, Bari ,","institution_ids":["https://openalex.org/I4210148743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I4210134678","display_name":"Consorzio Interuniversitario per le Biotecnologie","ror":"https://ror.org/03ka4h071","country_code":"IT","type":"education","lineage":["https://openalex.org/I4210134678"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Consorzio Interuniversitario Biotecnologie , BIC Incubatori, Via Flavia 23/1, 34148, Trieste ,","Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,","Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche , Via G. Amendola 122/O, 70125, Bari ,"],"raw_orcid":"https://orcid.org/0000-0003-3663-0859","affiliations":[{"raw_affiliation_string":"Consorzio Interuniversitario Biotecnologie , BIC Incubatori, Via Flavia 23/1, 34148, Trieste ,","institution_ids":["https://openalex.org/I4210134678"]},{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, Consiglio Nazionale delle Ricerche , Via G. Amendola 122/O, 70125, Bari ,","institution_ids":["https://openalex.org/I4210148743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067077141","display_name":"Bruno Fosso","orcid":"https://orcid.org/0000-0003-2324-086X"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Bruno Fosso","raw_affiliation_strings":["Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,"],"raw_orcid":"https://orcid.org/0000-0003-2324-086X","affiliations":[{"raw_affiliation_string":"Department of Biosciences, Biotechnology and Environment, University of Bari Aldo Moro , Via E. Orabona 4, 70126, Bari ,","institution_ids":["https://openalex.org/I5561750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.3063,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.80620048,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8029592037200928},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5360550880432129},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5226112008094788},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5184728503227234},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5005500316619873},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.4886024594306946},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3286314606666565},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31340646743774414},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12378063797950745},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11171510815620422},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.06802758574485779}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8029592037200928},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5360550880432129},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5226112008094788},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5184728503227234},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5005500316619873},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.4886024594306946},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3286314606666565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31340646743774414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12378063797950745},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11171510815620422},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.06802758574485779}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae680","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae680/61321504/bbae680.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39749666","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39749666","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11695915","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11695915","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11695915/pdf/bbae680.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:ricerca.uniba.it:11586/526360","is_oa":false,"landing_page_url":"https://hdl.handle.net/11586/526360","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae680","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae680","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae680/61321504/bbae680.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G4324508169","display_name":null,"funder_award_id":"PNC0000002","funder_id":"https://openalex.org/F4320331528","funder_display_name":"Ministero dell'Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G476030748","display_name":null,"funder_award_id":"H93C22000560003","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G4766350446","display_name":null,"funder_award_id":"PNC-E3-2022-23683266","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G6970470146","display_name":null,"funder_award_id":"CN_00000013","funder_id":"https://openalex.org/F4320331528","funder_display_name":"Ministero dell'Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G7039972366","display_name":null,"funder_award_id":"E3-2022-23683266","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"}],"funders":[{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"},{"id":"https://openalex.org/F4320331528","display_name":"Ministero dell'Universit\u00e0 e della Ricerca","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4406037031.pdf"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W84733630","https://openalex.org/W1222064643","https://openalex.org/W1878521557","https://openalex.org/W1905818355","https://openalex.org/W1982224165","https://openalex.org/W1997851690","https://openalex.org/W2032171228","https://openalex.org/W2051838613","https://openalex.org/W2056932987","https://openalex.org/W2069601176","https://openalex.org/W2097160089","https://openalex.org/W2109848222","https://openalex.org/W2113679889","https://openalex.org/W2116846792","https://openalex.org/W2119888547","https://openalex.org/W2120902911","https://openalex.org/W2122806219","https://openalex.org/W2131186249","https://openalex.org/W2132473766","https://openalex.org/W2134375163","https://openalex.org/W2144560237","https://openalex.org/W2151748773","https://openalex.org/W2159954944","https://openalex.org/W2160969485","https://openalex.org/W2161466984","https://openalex.org/W2173732482","https://openalex.org/W2297705778","https://openalex.org/W2337747100","https://openalex.org/W2499291481","https://openalex.org/W2533132894","https://openalex.org/W2581589058","https://openalex.org/W2599417231","https://openalex.org/W2613720899","https://openalex.org/W2745006471","https://openalex.org/W2763159727","https://openalex.org/W2789843538","https://openalex.org/W2794358281","https://openalex.org/W2938868597","https://openalex.org/W2950150251","https://openalex.org/W2986925300","https://openalex.org/W2990618091","https://openalex.org/W2999840999","https://openalex.org/W3003070248","https://openalex.org/W3034087136","https://openalex.org/W3040245690","https://openalex.org/W3047309599","https://openalex.org/W3104596207","https://openalex.org/W4225258284","https://openalex.org/W4283018586","https://openalex.org/W4304481015","https://openalex.org/W4307843774","https://openalex.org/W4321611856","https://openalex.org/W4376503838","https://openalex.org/W4391514397","https://openalex.org/W4398177119","https://openalex.org/W4400659519","https://openalex.org/W4402599014","https://openalex.org/W4405381550"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2487541429","https://openalex.org/W1910109602","https://openalex.org/W2080583581","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2329606903","https://openalex.org/W3195915274","https://openalex.org/W4285082713","https://openalex.org/W2344981695"],"abstract_inverted_index":{"The":[0],"advent":[1],"of":[2,10,17,27,37,48,54,76,118,174],"high-throughput":[3],"sequencing":[4],"(HTS)":[5],"technologies":[6],"unlocked":[7],"the":[8,11,15,46,52,69,73,80,116,169],"complexity":[9],"microbial":[12,49],"world":[13],"through":[14,51],"development":[16],"metagenomics,":[18],"which":[19],"now":[20],"provides":[21],"an":[22,64,120,180],"unprecedented":[23],"and":[24,30,39,72,87,96,107,125,146,153,157,164,182,199],"comprehensive":[25],"overview":[26],"its":[28],"taxonomic":[29,70,128],"functional":[31,74],"contribution":[32,75],"in":[33,151,172],"a":[34,111,134,162],"huge":[35],"variety":[36],"macro-":[38],"micro-ecosystems.":[40],"In":[41,60,90],"particular,":[42],"shotgun":[43],"metagenomics":[44],"allows":[45],"reconstruction":[47],"genomes,":[50],"assembly":[53],"reads":[55],"into":[56],"MAGs":[57,62],"(metagenome-assembled":[58],"genomes).":[59],"fact,":[61],"represent":[63],"information-rich":[65],"proxy":[66],"for":[67,123,190],"inferring":[68],"composition":[71],"microbiomes,":[77],"even":[78],"if":[79],"relevant":[81],"analytical":[82],"approaches":[83],"are":[84],"not":[85],"trivial":[86],"still":[88],"improvable.":[89],"this":[91],"regard,":[92],"tools":[93,171],"like":[94],"CAMITAX":[95,145],"GTDBtk":[97,147],"have":[98],"implemented":[99],"complex":[100],"approaches,":[101],"relying":[102],"on":[103,138],"marker":[104],"gene":[105],"identification":[106],"sequence":[108],"alignments,":[109],"requiring":[110],"large":[112],"processing":[113],"time.":[114],"With":[115],"aim":[117],"deploying":[119],"effective":[121],"tool":[122,185],"fast":[124,163],"reliable":[126],"MAG":[127],"classification,":[129],"we":[130],"present":[131],"here":[132],"kMetaShot,":[133],"taxonomy":[135],"classifier":[136],"based":[137],"k-mer/minimizer":[139],"counting.":[140],"We":[141],"benchmarked":[142],"kMetaShot":[143,178],"against":[144],"by":[148],"using":[149],"both":[150],"silico":[152],"real":[154],"mock":[155],"communities":[156],"demonstrated":[158],"how,":[159],"while":[160],"implementing":[161],"concise":[165],"algorithm,":[166],"it":[167],"outperforms":[168],"other":[170],"terms":[173],"classification":[175],"accuracy.":[176],"Additionally,":[177],"is":[179,187,197],"easy-to-install":[181],"easy-to-use":[183],"bioinformatic":[184],"that":[186],"also":[188],"suitable":[189],"researchers":[191],"with":[192],"few":[193],"command-line":[194],"skills.":[195],"It":[196],"available":[198],"documented":[200],"at":[201],"https://github.com/gdefazio/kMetaShot.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
