{"id":"https://openalex.org/W4405902606","doi":"https://doi.org/10.1093/bib/bbae679","title":"The iPhylo suite: an interactive platform for building and annotating biological and chemical taxonomic trees","display_name":"The iPhylo suite: an interactive platform for building and annotating biological and chemical taxonomic trees","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405902606","doi":"https://doi.org/10.1093/bib/bbae679","pmid":"https://pubmed.ncbi.nlm.nih.gov/39737565"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae679","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae679/61294036/bbae679.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae679/61294036/bbae679.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104255668","display_name":"Yueer Li","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yueer Li","raw_affiliation_strings":["MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,"],"affiliations":[{"raw_affiliation_string":"MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100693546","display_name":"Peng Chen","orcid":"https://orcid.org/0000-0001-6503-1113"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Peng","raw_affiliation_strings":["MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,"],"affiliations":[{"raw_affiliation_string":"MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094271750","display_name":"Fei Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092870","display_name":"Jiaxing University","ror":"https://ror.org/00j2a7k55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092870"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Chi","raw_affiliation_strings":["Innovation Center of Yangtze River Delta, Zhejiang University , 828 Zhongxing Road, Jiashan County, Jiaxing, Zhejiang 314103 ,"],"affiliations":[{"raw_affiliation_string":"Innovation Center of Yangtze River Delta, Zhejiang University , 828 Zhongxing Road, Jiashan County, Jiaxing, Zhejiang 314103 ,","institution_ids":["https://openalex.org/I4210092870","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053830815","display_name":"Zinuo Huang","orcid":"https://orcid.org/0000-0002-7579-7056"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zinuo Huang","raw_affiliation_strings":["MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,"],"affiliations":[{"raw_affiliation_string":"MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100587475","display_name":"Mengyi Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyi Yuan","raw_affiliation_strings":["MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,"],"affiliations":[{"raw_affiliation_string":"MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007171666","display_name":"Xin Zhou","orcid":"https://orcid.org/0000-0001-8089-4507"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xin Zhou","raw_affiliation_strings":["Department of Genetics, Stanford University , Stanford, 291 Campus Drive, Santa Clara County, CA 94305 ,"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University , Stanford, 291 Campus Drive, Santa Clara County, CA 94305 ,","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054506876","display_name":"Chao Jiang","orcid":"https://orcid.org/0000-0003-0260-7271"},"institutions":[{"id":"https://openalex.org/I192209268","display_name":"Shaoxing University","ror":"https://ror.org/0435tej63","country_code":"CN","type":"education","lineage":["https://openalex.org/I192209268"]},{"id":"https://openalex.org/I4210160507","display_name":"Center for Life Sciences","ror":"https://ror.org/05kje8j93","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I4210166576","display_name":"First Affiliated Hospital Zhejiang University","ror":"https://ror.org/05m1p5x56","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210166576"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Jiang","raw_affiliation_strings":["Center for Life Sciences, Shaoxing Institute, Zhejiang University , 8 Nanbin East Road, Shangyu District, Shaoxing, Zhejiang 321000 ,","MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine , 79 Qingchun Road, Shangcheng District, Hangzhou, Zhejiang 310009 ,"],"affiliations":[{"raw_affiliation_string":"Center for Life Sciences, Shaoxing Institute, Zhejiang University , 8 Nanbin East Road, Shangyu District, Shaoxing, Zhejiang 321000 ,","institution_ids":["https://openalex.org/I192209268","https://openalex.org/I76130692","https://openalex.org/I4210160507"]},{"raw_affiliation_string":"MOE Key Laboratory of Biosystems Homeostasis & Protection, and Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences Institute, Zhejiang University , 866 Yuhangtang Road, Xihu District, Hangzhou, Zhejiang 310030 ,","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine , 79 Qingchun Road, Shangcheng District, Hangzhou, Zhejiang 310009 ,","institution_ids":["https://openalex.org/I76130692","https://openalex.org/I4210166576"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5104255668"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.5014,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.94038705,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9642000198364258,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9642000198364258,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9556999802589417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8815768957138062},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6077638864517212},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34280720353126526},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.1206466555595398},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.08353641629219055}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8815768957138062},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6077638864517212},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34280720353126526},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.1206466555595398},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.08353641629219055}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae679","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae679/61294036/bbae679.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39737565","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39737565","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11684897","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11684897","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11684897/pdf/bbae679.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae679","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae679","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae679/61294036/bbae679.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4799724167","display_name":null,"funder_award_id":"82173645","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7140936776","display_name":null,"funder_award_id":"82341109","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405902606.pdf","grobid_xml":"https://content.openalex.org/works/W4405902606.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W33976920","https://openalex.org/W1992520673","https://openalex.org/W2033377040","https://openalex.org/W2066783771","https://openalex.org/W2069013776","https://openalex.org/W2094405673","https://openalex.org/W2111032848","https://openalex.org/W2114850508","https://openalex.org/W2116687544","https://openalex.org/W2117801354","https://openalex.org/W2130362098","https://openalex.org/W2135134576","https://openalex.org/W2142678031","https://openalex.org/W2155308177","https://openalex.org/W2277953252","https://openalex.org/W2507517445","https://openalex.org/W2548357532","https://openalex.org/W2598135066","https://openalex.org/W2609872328","https://openalex.org/W2745006471","https://openalex.org/W2799524357","https://openalex.org/W2886401819","https://openalex.org/W2890462141","https://openalex.org/W2909518832","https://openalex.org/W3001391362","https://openalex.org/W3005235420","https://openalex.org/W3009737049","https://openalex.org/W3015913142","https://openalex.org/W3093242063","https://openalex.org/W3099485282","https://openalex.org/W3118330907","https://openalex.org/W3121804420","https://openalex.org/W3153284035","https://openalex.org/W3156458251","https://openalex.org/W3180679829","https://openalex.org/W3195345191","https://openalex.org/W3206742358","https://openalex.org/W4200181259","https://openalex.org/W4238339784","https://openalex.org/W4241156921","https://openalex.org/W4242770142","https://openalex.org/W4248521078","https://openalex.org/W4280597534","https://openalex.org/W4282048064","https://openalex.org/W4283590876","https://openalex.org/W4286457208","https://openalex.org/W4294225553","https://openalex.org/W4302292741","https://openalex.org/W4372333115","https://openalex.org/W4387109636","https://openalex.org/W4387974950","https://openalex.org/W4388759031","https://openalex.org/W4392091298","https://openalex.org/W4392640837","https://openalex.org/W4392693654","https://openalex.org/W4392699695","https://openalex.org/W4393998988","https://openalex.org/W4400618062"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W4404692318","https://openalex.org/W4200340037","https://openalex.org/W1511772879","https://openalex.org/W4379115841"],"abstract_inverted_index":{"Accurate":[0],"and":[1,11,28,49,54,68,73,100,102,121,154,160,164,175,181,186,189],"rapid":[2],"taxonomic":[3,23,35,56,71,180],"classifications":[4],"are":[5],"essential":[6],"for":[7,21,32,52,64,79,93,98,104,144,178],"systematically":[8],"exploring":[9],"organisms":[10],"metabolites":[12],"in":[13,113,162],"diverse":[14],"environments.":[15],"Many":[16],"tools":[17],"have":[18],"been":[19],"developed":[20],"biological":[22,53,185],"trees,":[24],"but":[25],"limitations":[26],"apply,":[27],"a":[29,46,74],"streamlined":[30],"method":[31],"constructing":[33],"chemical":[34,55,105,187],"trees":[36,72],"is":[37,170],"notably":[38],"absent.":[39],"We":[40,138],"present":[41],"the":[42,65,123,128,140,167],"iPhylo":[43,59,89,108,141,168],"suite":[44,60,169],"(https://www.iphylo.net/),":[45],"comprehensive,":[47],"automated,":[48],"interactive":[50,66,176],"platform":[51],"analysis.":[57],"The":[58,107],"features":[61,188],"web-based":[62],"modules":[63],"construction":[67],"annotation":[69],"of":[70,184],"stand-alone":[75],"command-line":[76],"interface":[77],"(CLI)":[78],"local":[80],"operation":[81],"or":[82],"deployment":[83],"on":[84],"high-performance":[85],"computing":[86],"(HPC)":[87],"clusters.":[88],"supports":[90],"National":[91],"Center":[92],"Biotechnology":[94],"Information":[95],"(NCBI)":[96],"taxonomy":[97],"biologicals":[99],"ChemOnt":[101],"NPClassifier":[103],"classifications.":[106],"visualization":[109],"module,":[110],"fully":[111],"implemented":[112],"R,":[114],"allows":[115],"users":[116],"to":[117],"save":[118],"progress":[119],"locally":[120],"customize":[122],"underlying":[124],"R":[125],"code.":[126],"Finally,":[127],"CLI":[129],"module":[130],"facilitates":[131],"analysis":[132],"across":[133],"all":[134],"hierarchical":[135],"relational":[136],"databases.":[137],"showcase":[139],"suite's":[142],"capabilities":[143],"visualizing":[145],"environmental":[146],"microbiomes,":[147],"analyzing":[148],"gut":[149],"microbial":[150],"metabolite":[151],"synthesis":[152],"preferences,":[153],"discovering":[155],"novel":[156],"correlations":[157],"between":[158],"microbiome":[159],"metabolome":[161],"humans":[163],"environment.":[165],"Overall,":[166],"distinguished":[171],"by":[172],"its":[173],"unified":[174],"framework":[177],"in-depth":[179],"integrative":[182],"analyses":[183],"beyond.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
