{"id":"https://openalex.org/W4405732436","doi":"https://doi.org/10.1093/bib/bbae666","title":"stHGC: a self-supervised graph representation learning for spatial domain recognition with hybrid graph and spatial regularization","display_name":"stHGC: a self-supervised graph representation learning for spatial domain recognition with hybrid graph and spatial regularization","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405732436","doi":"https://doi.org/10.1093/bib/bbae666","pmid":"https://pubmed.ncbi.nlm.nih.gov/39710435"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae666","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae666/61254072/bbae666.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae666/61254072/bbae666.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108836205","display_name":"Rongxian Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I145897649","display_name":"Minzu University of China","ror":"https://ror.org/0044e2g62","country_code":"CN","type":"education","lineage":["https://openalex.org/I145897649"]},{"id":"https://openalex.org/I61565387","display_name":"Dalian Minzu University","ror":"https://ror.org/02hxfx521","country_code":"CN","type":"education","lineage":["https://openalex.org/I61565387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runqing Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,"],"raw_orcid":"https://orcid.org/0009-0000-5334-4032","affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I145897649","https://openalex.org/I61565387"]},{"raw_affiliation_string":"SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I61565387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091049548","display_name":"Qiguo Dai","orcid":"https://orcid.org/0000-0003-3040-2492"},"institutions":[{"id":"https://openalex.org/I145897649","display_name":"Minzu University of China","ror":"https://ror.org/0044e2g62","country_code":"CN","type":"education","lineage":["https://openalex.org/I145897649"]},{"id":"https://openalex.org/I61565387","display_name":"Dalian Minzu University","ror":"https://ror.org/02hxfx521","country_code":"CN","type":"education","lineage":["https://openalex.org/I61565387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiguo Dai","raw_affiliation_strings":["College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,"],"raw_orcid":"https://orcid.org/0000-0003-3040-2492","affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I145897649","https://openalex.org/I61565387"]},{"raw_affiliation_string":"SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I61565387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101944882","display_name":"Xiaodong Duan","orcid":"https://orcid.org/0000-0002-8048-0280"},"institutions":[{"id":"https://openalex.org/I145897649","display_name":"Minzu University of China","ror":"https://ror.org/0044e2g62","country_code":"CN","type":"education","lineage":["https://openalex.org/I145897649"]},{"id":"https://openalex.org/I61565387","display_name":"Dalian Minzu University","ror":"https://ror.org/02hxfx521","country_code":"CN","type":"education","lineage":["https://openalex.org/I61565387"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Duan","raw_affiliation_strings":["College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I145897649","https://openalex.org/I61565387"]},{"raw_affiliation_string":"SEAC Key Laboratory of Big Data Applied Technology, Dalian Minzu University , 116600 Dalian ,","institution_ids":["https://openalex.org/I61565387"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , 611730 Chengdu ,"],"raw_orcid":"https://orcid.org/0000-0001-6406-1142","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , 611730 Chengdu ,","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.931,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.75067178,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6912590265274048},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6821731328964233},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6047874093055725},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5509322881698608},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5465599298477173},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.5400747656822205},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.526605486869812},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.49184536933898926},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4669206142425537},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4023315906524658},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3651745319366455},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.219285249710083},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1517358422279358}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6912590265274048},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6821731328964233},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6047874093055725},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5509322881698608},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5465599298477173},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.5400747656822205},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.526605486869812},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.49184536933898926},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4669206142425537},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4023315906524658},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3651745319366455},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.219285249710083},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1517358422279358},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae666","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae666/61254072/bbae666.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39710435","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39710435","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11663487","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11663487","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11663487/pdf/bbae666.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae666","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae666","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae666/61254072/bbae666.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5133105583","display_name":null,"funder_award_id":"62131004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5389941768","display_name":null,"funder_award_id":"62471088","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405732436.pdf"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1613448136","https://openalex.org/W1974565082","https://openalex.org/W2025398141","https://openalex.org/W2031215175","https://openalex.org/W2073654208","https://openalex.org/W2098181012","https://openalex.org/W2131681506","https://openalex.org/W2519132385","https://openalex.org/W2570088150","https://openalex.org/W2770641296","https://openalex.org/W2800392236","https://openalex.org/W2889326414","https://openalex.org/W2950372712","https://openalex.org/W3004640473","https://openalex.org/W3021920958","https://openalex.org/W3032266082","https://openalex.org/W3099768174","https://openalex.org/W3101477379","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3126958162","https://openalex.org/W3134482219","https://openalex.org/W3165120573","https://openalex.org/W4206826076","https://openalex.org/W4221095552","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4235169531","https://openalex.org/W4294042823","https://openalex.org/W4297733535","https://openalex.org/W4306406844","https://openalex.org/W4309667063","https://openalex.org/W4313231613","https://openalex.org/W4322738920","https://openalex.org/W4384665375","https://openalex.org/W4385612899","https://openalex.org/W4387580076","https://openalex.org/W4389579167","https://openalex.org/W4390066212","https://openalex.org/W4390678091","https://openalex.org/W4390814844","https://openalex.org/W4393899332","https://openalex.org/W4402268354","https://openalex.org/W6745537798","https://openalex.org/W6755573351"],"related_works":["https://openalex.org/W2389214306","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W1838576100","https://openalex.org/W2095886385","https://openalex.org/W2889616422","https://openalex.org/W2089704382","https://openalex.org/W1983399550","https://openalex.org/W97075385","https://openalex.org/W2357523926"],"abstract_inverted_index":{"Advancements":[0],"in":[1,107,162,192],"spatial":[2,16,30,43,69,85,137,152,164],"transcriptomics":[3],"(ST)":[4],"technology":[5],"have":[6],"enabled":[7],"the":[8,39,103,113,126,144,148],"analysis":[9],"of":[10,22,29,42,105,151],"gene":[11,46,89],"expression":[12,47,90],"while":[13],"preserving":[14],"cellular":[15,23],"information,":[17],"greatly":[18],"enhancing":[19],"our":[20],"understanding":[21],"interactions":[24],"within":[25],"tissues.":[26],"Accurate":[27],"identification":[28],"domains":[31,165],"is":[32,76,99,117,140],"crucial":[33],"for":[34,67,132,180],"comprehending":[35],"tissue":[36],"organization.":[37],"However,":[38],"effective":[40],"integration":[41],"location":[44],"and":[45,87,125,186],"still":[48],"faces":[49],"significant":[50],"challenges.":[51],"To":[52],"address":[53],"this":[54,111],"challenge,":[55],"we":[56],"propose":[57],"a":[58,72,93,136],"novel":[59],"self-supervised":[60,94,127],"graph":[61,75,95,114],"representation":[62,96,104],"learning":[63,97],"framework":[64,98],"named":[65],"stHGC":[66,158,173],"identifying":[68,163],"domains.":[70],"Firstly,":[71],"hybrid":[73],"neighbor":[74],"constructed":[77],"by":[78],"integrating":[79],"different":[80,170],"similarity":[81],"metrics":[82],"to":[83,101,119,142,146,177],"represent":[84],"proximity":[86],"high-dimensional":[88],"features.":[91],"Secondly,":[92],"introduced":[100],"learn":[102],"spots":[106],"ST":[108,167,194],"data.":[109,195],"Within":[110],"framework,":[112],"attention":[115],"mechanism":[116],"utilized":[118],"characterize":[120],"relationships":[121],"between":[122],"adjacent":[123],"spots,":[124],"method":[128],"ensures":[129],"distinct":[130],"representations":[131],"non-neighboring":[133],"spots.":[134],"Lastly,":[135],"regularization":[138],"constraint":[139],"employed":[141],"enable":[143],"model":[145],"retain":[147],"structural":[149],"information":[150],"neighbors.":[153],"Experimental":[154],"results":[155],"demonstrate":[156],"that":[157],"outperforms":[159],"state-of-the-art":[160],"methods":[161],"across":[166],"datasets":[168],"with":[169],"resolutions.":[171],"Furthermore,":[172],"has":[174],"been":[175],"proven":[176],"be":[178],"beneficial":[179],"downstream":[181],"tasks":[182],"such":[183],"as":[184],"denoising":[185],"trajectory":[187],"inference,":[188],"showcasing":[189],"its":[190],"scalability":[191],"handling":[193]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2025-10-10T00:00:00"}
