{"id":"https://openalex.org/W4405607173","doi":"https://doi.org/10.1093/bib/bbae657","title":"Synthetic plasma pool cohort correction for affinity-based proteomics datasets allows multiple study comparison","display_name":"Synthetic plasma pool cohort correction for affinity-based proteomics datasets allows multiple study comparison","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405607173","doi":"https://doi.org/10.1093/bib/bbae657","pmid":"https://pubmed.ncbi.nlm.nih.gov/39694815"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae657","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae657/61226129/bbae657.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae657/61226129/bbae657.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008052772","display_name":"Dries Heylen","orcid":"https://orcid.org/0000-0001-7112-9651"},"institutions":[{"id":"https://openalex.org/I68522396","display_name":"Flemish Institute for Technological Research","ror":"https://ror.org/04gq0w522","country_code":"BE","type":"facility","lineage":["https://openalex.org/I68522396"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Dries Heylen","raw_affiliation_strings":["Data Science Institute, Theory Lab, Hasselt University , 3590 Diepenbeek ,","Flemish Institute for Technological Research (VITO) , Mol ,"],"affiliations":[{"raw_affiliation_string":"Data Science Institute, Theory Lab, Hasselt University , 3590 Diepenbeek ,","institution_ids":["https://openalex.org/I878454856"]},{"raw_affiliation_string":"Flemish Institute for Technological Research (VITO) , Mol ,","institution_ids":["https://openalex.org/I68522396"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021029315","display_name":"Murih Pusparum","orcid":"https://orcid.org/0000-0001-9560-0612"},"institutions":[{"id":"https://openalex.org/I68522396","display_name":"Flemish Institute for Technological Research","ror":"https://ror.org/04gq0w522","country_code":"BE","type":"facility","lineage":["https://openalex.org/I68522396"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Murih Pusparum","raw_affiliation_strings":["Flemish Institute for Technological Research (VITO) , Mol ,","Hasselt University, Data Science Institute , 3590 Diepenbeek ,"],"affiliations":[{"raw_affiliation_string":"Flemish Institute for Technological Research (VITO) , Mol ,","institution_ids":["https://openalex.org/I68522396"]},{"raw_affiliation_string":"Hasselt University, Data Science Institute , 3590 Diepenbeek ,","institution_ids":["https://openalex.org/I878454856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030274832","display_name":"Jurgis Kuliesius","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137763","display_name":"Centre for Global Health Research","ror":"https://ror.org/03xasj370","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210137763"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Jurgis Kuliesius","raw_affiliation_strings":["Centre for Global Health Research, University of Edinburgh, Edinburgh BioQuarter , Edinburgh EH16 4UX ,"],"affiliations":[{"raw_affiliation_string":"Centre for Global Health Research, University of Edinburgh, Edinburgh BioQuarter , Edinburgh EH16 4UX ,","institution_ids":["https://openalex.org/I4210137763","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104112918","display_name":"Jim Wilson","orcid":null},"institutions":[{"id":"https://openalex.org/I2800150677","display_name":"Western General Hospital","ror":"https://ror.org/009kr6r15","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1324252669","https://openalex.org/I2800150677"]},{"id":"https://openalex.org/I4210137763","display_name":"Centre for Global Health Research","ror":"https://ror.org/03xasj370","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210137763"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Jim Wilson","raw_affiliation_strings":["Centre for Global Health Research, University of Edinburgh, Edinburgh BioQuarter , Edinburgh EH16 4UX ,","MRC Human Genetics Unit, University of Edinburgh, Western General Hospital , Edinburgh, EH4 2XU ,"],"affiliations":[{"raw_affiliation_string":"Centre for Global Health Research, University of Edinburgh, Edinburgh BioQuarter , Edinburgh EH16 4UX ,","institution_ids":["https://openalex.org/I4210137763","https://openalex.org/I98677209"]},{"raw_affiliation_string":"MRC Human Genetics Unit, University of Edinburgh, Western General Hospital , Edinburgh, EH4 2XU ,","institution_ids":["https://openalex.org/I2800150677","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087503928","display_name":"Young\u2010Chan Park","orcid":"https://orcid.org/0000-0001-8964-4571"},"institutions":[{"id":"https://openalex.org/I2802821144","display_name":"Center for Environmental Health","ror":"https://ror.org/03k84rm07","country_code":"US","type":"facility","lineage":["https://openalex.org/I2802821144"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Young-Chan Park","raw_affiliation_strings":["Institute of Translational Genomics, Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health , Neuherberg ,"],"affiliations":[{"raw_affiliation_string":"Institute of Translational Genomics, Helmholtz Zentrum M\u00fcnchen, German Research Center for Environmental Health , Neuherberg ,","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I2802821144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059310663","display_name":"Jacek Jamio\u0142kowski","orcid":"https://orcid.org/0000-0001-8442-9944"},"institutions":[{"id":"https://openalex.org/I146122375","display_name":"Medical University of Bia\u0142ystok","ror":"https://ror.org/00y4ya841","country_code":"PL","type":"education","lineage":["https://openalex.org/I146122375"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jacek Jamio\u0142kowski","raw_affiliation_strings":["Department of Population Medicine and Lifestyle Diseases Prevention, Medical University of Bialystok , 15-089 Bia\u0142ystok ,"],"affiliations":[{"raw_affiliation_string":"Department of Population Medicine and Lifestyle Diseases Prevention, Medical University of Bialystok , 15-089 Bia\u0142ystok ,","institution_ids":["https://openalex.org/I146122375"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088506763","display_name":"Valentino D\u2019Onofrio","orcid":"https://orcid.org/0000-0003-3828-0442"},"institutions":[{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Valentino D\u2019Onofrio","raw_affiliation_strings":["Center for Vaccinology, Ghent University and Ghent University Hospital , 9000 Ghent ,"],"affiliations":[{"raw_affiliation_string":"Center for Vaccinology, Ghent University and Ghent University Hospital , 9000 Ghent ,","institution_ids":["https://openalex.org/I2801227569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053819400","display_name":"Dirk Valkenborg","orcid":"https://orcid.org/0000-0002-1877-3496"},"institutions":[{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Dirk Valkenborg","raw_affiliation_strings":["Hasselt University, Data Science Institute , 3590 Diepenbeek ,"],"affiliations":[{"raw_affiliation_string":"Hasselt University, Data Science Institute , 3590 Diepenbeek ,","institution_ids":["https://openalex.org/I878454856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053646618","display_name":"Jan Aerts","orcid":"https://orcid.org/0000-0002-6416-2717"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jan Aerts","raw_affiliation_strings":["Augmented Intelligence for Data Analytics (AIDA) Lab Department of Biosystems KU Leuven , Leuven ,"],"affiliations":[{"raw_affiliation_string":"Augmented Intelligence for Data Analytics (AIDA) Lab Department of Biosystems KU Leuven , Leuven ,","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082614669","display_name":"G\u00f6khan Ertaylan","orcid":"https://orcid.org/0000-0001-5602-6435"},"institutions":[{"id":"https://openalex.org/I68522396","display_name":"Flemish Institute for Technological Research","ror":"https://ror.org/04gq0w522","country_code":"BE","type":"facility","lineage":["https://openalex.org/I68522396"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"G\u00f6khan Ertaylan","raw_affiliation_strings":["Flemish Institute for Technological Research (VITO) , Mol ,"],"affiliations":[{"raw_affiliation_string":"Flemish Institute for Technological Research (VITO) , Mol ,","institution_ids":["https://openalex.org/I68522396"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053729120","display_name":"Jef Hooyberghs","orcid":"https://orcid.org/0000-0003-3781-9645"},"institutions":[{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jef Hooyberghs","raw_affiliation_strings":["Data Science Institute, Theory Lab, Hasselt University , 3590 Diepenbeek ,"],"affiliations":[{"raw_affiliation_string":"Data Science Institute, Theory Lab, Hasselt University , 3590 Diepenbeek ,","institution_ids":["https://openalex.org/I878454856"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5008052772"],"corresponding_institution_ids":["https://openalex.org/I68522396","https://openalex.org/I878454856"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.4852,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.62141039,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9717000126838684,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6874586939811707},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.6785803437232971},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.6699576377868652},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5253562331199646},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5215439796447754},{"id":"https://openalex.org/keywords/quantitative-proteomics","display_name":"Quantitative proteomics","score":0.4969513714313507},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.45362985134124756},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4182703495025635},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4044525623321533},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3338755965232849},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3324939012527466},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33146923780441284},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18327564001083374},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1576266586780548},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1175737977027893},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09257721900939941}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6874586939811707},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.6785803437232971},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.6699576377868652},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5253562331199646},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5215439796447754},{"id":"https://openalex.org/C80311884","wikidata":"https://www.wikidata.org/wiki/Q7268939","display_name":"Quantitative proteomics","level":4,"score":0.4969513714313507},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.45362985134124756},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4182703495025635},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4044525623321533},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3338755965232849},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3324939012527466},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33146923780441284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18327564001083374},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1576266586780548},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1175737977027893},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09257721900939941},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001798","descriptor_name":"Blood Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae657","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae657/61226129/bbae657.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39694815","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39694815","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:archive.ugent.be:01JFEXGZP5MDSYN12TC485ZXHW","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-01JFEXGZP5MDSYN12TC485ZXHW","pdf_url":"https://biblio.ugent.be/publication/01JFEXGZP5MDSYN12TC485ZXHW/file/01JHMQNGC3ZXV87NGBDV5ZVJ8M.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1477-4054","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:documentserver.uhasselt.be:1942/44939","is_oa":true,"landing_page_url":"http://hdl.handle.net/1942/44939","pdf_url":"https://documentserver.uhasselt.be//bitstream/1942/44939/1/Synthetic%20plasma%20pool%20cohort%20correction%20for%20affinity-based%20proteomics%20datasets%20allows%20multiple%20study%20comparison.pdf","source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/768504","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/768504","pdf_url":"https://lirias.kuleuven.be/retrieve/e5d323fc-bab3-4597-be5d-e9233afe845f","source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Briefings In Bioinformatics, vol. 26 (1), Art.No. ARTN bbae657","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11653412","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11653412","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11653412/pdf/bbae657.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae657","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae657","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae657/61226129/bbae657.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1689944598","display_name":null,"funder_award_id":"018947","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3001543491","display_name":null,"funder_award_id":"LSHG-CT-2006-018947","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4801199537","display_name":null,"funder_award_id":"CZB/4/710","funder_id":"https://openalex.org/F4320313269","funder_display_name":"Scottish Government"},{"id":"https://openalex.org/G970400076","display_name":null,"funder_award_id":"LSHG-CT-2006-018947","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320313269","display_name":"Scottish Government","ror":"https://ror.org/04v2xmd71"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320325866","display_name":"Universiteit Hasselt","ror":"https://ror.org/04nbhqj75"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405607173.pdf","grobid_xml":"https://content.openalex.org/works/W4405607173.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1718722862","https://openalex.org/W2006202822","https://openalex.org/W2010084870","https://openalex.org/W2421712915","https://openalex.org/W2897275515","https://openalex.org/W2909817033","https://openalex.org/W3093451235","https://openalex.org/W3197755573","https://openalex.org/W3209856620","https://openalex.org/W4205993035","https://openalex.org/W4221115451","https://openalex.org/W4290861579","https://openalex.org/W4310460988","https://openalex.org/W6637608407","https://openalex.org/W6784501709"],"related_works":["https://openalex.org/W4388870064","https://openalex.org/W2210139803","https://openalex.org/W4235186151","https://openalex.org/W2054685365","https://openalex.org/W2056057048","https://openalex.org/W2667588871","https://openalex.org/W2272354214","https://openalex.org/W2084768720","https://openalex.org/W2043010663","https://openalex.org/W4248308508"],"abstract_inverted_index":{"Proteomics":[0],"stands":[1],"as":[2],"the":[3,46,119,150,154,157,184,190,196],"crucial":[4],"link":[5],"between":[6,21],"genomics":[7],"and":[8,77,140,146,176],"human":[9],"diseases.":[10],"Quantitative":[11],"proteomics":[12,173],"provides":[13],"detailed":[14],"insights":[15],"into":[16],"protein":[17,35,83],"levels,":[18],"enabling":[19],"differentiation":[20],"distinct":[22],"phenotypes.":[23],"OLINK,":[24],"a":[25,32,101,111,160,211,219],"biotechnology":[26],"company":[27],"from":[28,57],"Uppsala,":[29],"Sweden,":[30],"offers":[31],"targeted,":[33],"affinity-based":[34],"measurement":[36],"method":[37,163,205],"called":[38],"Target":[39,168],"96,":[40],"which":[41,135,215],"has":[42],"become":[43],"prominent":[44],"in":[45,95,210],"field":[47],"of":[48,118,149,153,198],"proteomics.":[49],"The":[50,204],"SCALLOP":[51],"consortium,":[52],"for":[53,159],"instance,":[54],"contains":[55],"data":[56,174],"over":[58],"70.000":[59],"individuals":[60],"across":[61,108],"45":[62],"independent":[63,72],"cohort":[64],"studies,":[65],"all":[66,133,166],"sampled":[67],"by":[68],"OLINK.":[69],"However,":[70],"when":[71],"cohorts":[73,121],"want":[74],"to":[75,89,99,122,128,130,171],"collaborate":[76],"quantitatively":[78],"compare":[79,172],"their":[80,124],"target":[81],"96":[82,169],"values,":[84],"it":[85],"is":[86,136,216],"currently":[87],"advised":[88],"include":[90],"'identical":[91],"biological":[92,125],"bridging'":[93],"samples":[94,127],"each":[96,117],"sampling":[97],"run":[98,131],"perform":[100],"reference":[102],"sample":[103],"normalization,":[104],"correcting":[105],"technical":[106],"variations":[107],"measurements.":[109],"Such":[110],"'biological":[112],"bridging":[113,126],"sample'":[114],"approach":[115],"requires":[116],"involved":[120],"resend":[123],"OLINK":[129,167],"them":[132],"together,":[134],"logistically":[137],"challenging,":[138],"costly":[139],"time-consuming.":[141],"Hence":[142],"alternatives":[143],"are":[144],"searched":[145],"an":[147,199],"evaluation":[148],"current":[151],"state":[152],"art":[155],"exposes":[156],"need":[158],"more":[161],"robust":[162],"that":[164],"allows":[165],"studies":[170],"accurately":[175],"cost-efficiently.":[177],"To":[178],"meet":[179],"these":[180],"goals":[181],"we":[182],"developed":[183],"Synthetic":[185],"Plasma":[186],"Pool":[187],"Cohort":[188],"Correction,":[189],"'SPOC":[191],"correction'":[192],"approach,":[193],"based":[194],"on":[195,218],"use":[197,221],"OLINK-composed":[200],"synthetic":[201],"plasma":[202],"sample.":[203],"can":[206],"easily":[207],"be":[208],"implemented":[209],"federated":[212],"data-sharing":[213],"context":[214],"illustrated":[217],"sepsis":[220],"case.":[222]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
