{"id":"https://openalex.org/W4405307701","doi":"https://doi.org/10.1093/bib/bbae645","title":"Detection of germline CNVs from gene panel data: benchmarking the state of the art","display_name":"Detection of germline CNVs from gene panel data: benchmarking the state of the art","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405307701","doi":"https://doi.org/10.1093/bib/bbae645","pmid":"https://pubmed.ncbi.nlm.nih.gov/39668338"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae645","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae645","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae645/61090987/bbae645.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae645/61090987/bbae645.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047341902","display_name":"Elisabet Munt\u00e9","orcid":"https://orcid.org/0000-0001-8396-8284"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Elisabet Munt\u00e9","raw_affiliation_strings":["Doctoral Programme in Biomedicine, University of Barcelona (UB) , Casanova 143, 08036 Barcelona,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":"https://orcid.org/0000-0001-8396-8284","affiliations":[{"raw_affiliation_string":"Doctoral Programme in Biomedicine, University of Barcelona (UB) , Casanova 143, 08036 Barcelona,","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081856148","display_name":"Carla Roca","orcid":"https://orcid.org/0000-0003-1171-0588"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carla Roca","raw_affiliation_strings":["Doctoral Programme in Biomedicine, University of Barcelona (UB) , Casanova 143, 08036 Barcelona,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":"https://orcid.org/0000-0003-1171-0588","affiliations":[{"raw_affiliation_string":"Doctoral Programme in Biomedicine, University of Barcelona (UB) , Casanova 143, 08036 Barcelona,","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064135168","display_name":"Jes\u00fas Del Valle","orcid":"https://orcid.org/0000-0003-3607-7045"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Del Valle","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080634247","display_name":"L\u00eddia Feliubadal\u00f3","orcid":"https://orcid.org/0000-0002-1736-0112"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Lidia Feliubadal\u00f3","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081203668","display_name":"Marta Pineda","orcid":"https://orcid.org/0000-0002-5403-5845"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta Pineda","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046399679","display_name":"Bernat Gel","orcid":"https://orcid.org/0000-0001-8878-349X"},"institutions":[{"id":"https://openalex.org/I4210137002","display_name":"Institut d'Investigaci\u00f3 en Ci\u00e8ncies de la Salut Germans Trias i Pujol","ror":"https://ror.org/03bzdww12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210137002","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Bernat Gel","raw_affiliation_strings":["Hereditary Cancer Group, Germans Trias i Pujol Research Institute (IGTP) , Can Ruti Campus, Cam\u00ed de les Escoles s/n, 08916 Badalona, Barcelona,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hereditary Cancer Group, Germans Trias i Pujol Research Institute (IGTP) , Can Ruti Campus, Cam\u00ed de les Escoles s/n, 08916 Badalona, Barcelona,","institution_ids":["https://openalex.org/I4210137002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069148314","display_name":"Elisabeth Castellanos","orcid":"https://orcid.org/0000-0002-8133-5325"},"institutions":[{"id":"https://openalex.org/I4210137002","display_name":"Institut d'Investigaci\u00f3 en Ci\u00e8ncies de la Salut Germans Trias i Pujol","ror":"https://ror.org/03bzdww12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210137002","https://openalex.org/I4387153040"]},{"id":"https://openalex.org/I4210153460","display_name":"Hospital Universitari Germans Trias i Pujol","ror":"https://ror.org/04wxdxa47","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I157913058","https://openalex.org/I4210153292","https://openalex.org/I4210153460"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Elisabeth Castellanos","raw_affiliation_strings":["Clinical Genomics Research Group, Germans Trias i Pujol Research Institute (IGTP) , Can Ruti Campus, Cam\u00ed de les Escoles s/n, Badalona, Barcelona,","Genetics Department, Germans Trias i Pujol University Hospital (HUGTiP) , Can Ruti Campus, Carretera de Canyet s/n, 08916 Badalona, Barcelona,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Genomics Research Group, Germans Trias i Pujol Research Institute (IGTP) , Can Ruti Campus, Cam\u00ed de les Escoles s/n, Badalona, Barcelona,","institution_ids":["https://openalex.org/I4210137002"]},{"raw_affiliation_string":"Genetics Department, Germans Trias i Pujol University Hospital (HUGTiP) , Can Ruti Campus, Carretera de Canyet s/n, 08916 Badalona, Barcelona,","institution_ids":["https://openalex.org/I4210153460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083342683","display_name":"B\u00e1rbara Rivera","orcid":"https://orcid.org/0000-0001-9434-6288"},"institutions":[{"id":"https://openalex.org/I2801824472","display_name":"Jewish General Hospital","ror":"https://ror.org/056jjra10","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801824472","https://openalex.org/I2801902503","https://openalex.org/I4210139015","https://openalex.org/I4405256057"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA","ES"],"is_corresponding":false,"raw_author_name":"Barbara Rivera","raw_affiliation_strings":["Gerald Bronfman Department of Oncology, McGill University , 5100 de Maisonneuve Blvd. West, Suite 720 Montreal, QC,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Lady Davis Institute and Segal Cancer Centre, Jewish General Hospital , 3755 Chemin de la C\u00f4te-Sainte-Catherine, Montreal, QC,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gerald Bronfman Department of Oncology, McGill University , 5100 de Maisonneuve Blvd. West, Suite 720 Montreal, QC,","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Lady Davis Institute and Segal Cancer Centre, Jewish General Hospital , 3755 Chemin de la C\u00f4te-Sainte-Catherine, Montreal, QC,","institution_ids":["https://openalex.org/I2801824472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066749555","display_name":"David Cordero","orcid":"https://orcid.org/0000-0003-1470-2356"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"David Cordero","raw_affiliation_strings":["Consorcio de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge (IDIBELL) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","Preclinical and Experimental Research in Thoracic Tumors (PReTT) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","Unit of Bioinformatics for Precision Oncology (UBOP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Consorcio de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210154894"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge (IDIBELL) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210087039"]},{"raw_affiliation_string":"Preclinical and Experimental Research in Thoracic Tumors (PReTT) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":[]},{"raw_affiliation_string":"Unit of Bioinformatics for Precision Oncology (UBOP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210107147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048013245","display_name":"V\u0131\u0301ctor Moreno","orcid":"https://orcid.org/0000-0002-2818-5487"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I71999127","display_name":"Universitat de Barcelona","ror":"https://ror.org/021018s57","country_code":"ES","type":"education","lineage":["https://openalex.org/I71999127"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"V\u00edctor Moreno","raw_affiliation_strings":["Colorectal Cancer Group , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","Consorcio de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Department of Clinical Sciences , Faculty of Medicine and Health Sciences, Universitat de Barcelona Institute of Complex Systems (UBICS), , Freixa Llarga s/n, 08907 L'Hospitalet de Llobregat, Barcelona,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge (IDIBELL) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","University of Barcelona (UB) , Faculty of Medicine and Health Sciences, Universitat de Barcelona Institute of Complex Systems (UBICS), , Freixa Llarga s/n, 08907 L'Hospitalet de Llobregat, Barcelona,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Colorectal Cancer Group , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":[]},{"raw_affiliation_string":"Consorcio de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210154894"]},{"raw_affiliation_string":"Department of Clinical Sciences , Faculty of Medicine and Health Sciences, Universitat de Barcelona Institute of Complex Systems (UBICS), , Freixa Llarga s/n, 08907 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I71999127"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge (IDIBELL) , ONCOBELL Program, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210087039"]},{"raw_affiliation_string":"Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"University of Barcelona (UB) , Faculty of Medicine and Health Sciences, Universitat de Barcelona Institute of Complex Systems (UBICS), , Freixa Llarga s/n, 08907 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I71999127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070254609","display_name":"Conxi L\u00e1zaro","orcid":"https://orcid.org/0000-0002-7198-5906"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]},{"id":"https://openalex.org/I4210158561","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":"https://ror.org/04hya7017","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210158561"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Conxi L\u00e1zaro","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer (CIBERONC), Instituto de Salud Carlos III , Monforte de Lemos 5, 28029 Madrid,","institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210158561"]},{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080345196","display_name":"Jos\u00e9 Marcos Moreno-Cabrera","orcid":"https://orcid.org/0000-0001-8570-0345"},"institutions":[{"id":"https://openalex.org/I4210087039","display_name":"Institut d'Investigaci\u00f3 Biom\u00e9dica de Bellvitge","ror":"https://ror.org/0008xqs48","country_code":"ES","type":"facility","lineage":["https://openalex.org/I157913058","https://openalex.org/I2802050225","https://openalex.org/I4210087039","https://openalex.org/I4210096656","https://openalex.org/I4210106543","https://openalex.org/I4210107147","https://openalex.org/I4210153292","https://openalex.org/I4387153040","https://openalex.org/I71999127"]},{"id":"https://openalex.org/I4210107147","display_name":"Institut Catal\u00e0 d'Oncologia","ror":"https://ror.org/01j1eb875","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210107147"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 Marcos Moreno-Cabrera","raw_affiliation_strings":["Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","Unit of Bioinformatics for Precision Oncology (UBOP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,"],"raw_orcid":"https://orcid.org/0000-0001-8570-0345","affiliations":[{"raw_affiliation_string":"Hereditary Cancer Program , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Institut d\u2019Investigaci\u00f3 Biom\u00e8dica de Bellvitge - IDIBELL-ONCOBELL , Catalan Institute of Oncology, , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L\u2019Hospitalet de Llobregat,","institution_ids":["https://openalex.org/I4210087039","https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Oncology Data Analytics Program (ODAP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210107147"]},{"raw_affiliation_string":"Unit of Bioinformatics for Precision Oncology (UBOP), Catalan Institute of Oncology , Avinguda de la Granvia de l\u2019Hospitalet, 199, 08908 L'Hospitalet de Llobregat, Barcelona,","institution_ids":["https://openalex.org/I4210107147"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5070254609","https://openalex.org/A5080345196"],"corresponding_institution_ids":["https://openalex.org/I2801357902","https://openalex.org/I4210087039","https://openalex.org/I4210107147","https://openalex.org/I4210158561"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.2491,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.88790391,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.8099596500396729},{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.6648393869400024},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6417238712310791},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.6249859929084778},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6222708225250244},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39348769187927246},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26873430609703064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2547154724597931},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25330430269241333},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2393132448196411}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.8099596500396729},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.6648393869400024},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6417238712310791},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.6249859929084778},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6222708225250244},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39348769187927246},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26873430609703064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2547154724597931},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25330430269241333},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2393132448196411},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018095","descriptor_name":"Germ-Line Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018095","descriptor_name":"Germ-Line Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018095","descriptor_name":"Germ-Line Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018095","descriptor_name":"Germ-Line Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bib/bbae645","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae645","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae645/61090987/bbae645.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39668338","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39668338","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:311559","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/311559","pdf_url":"https://ddd.uab.cat/pub/artpub/2025/311559/311559.pdf","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11637760","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11637760","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11637760/pdf/bbae645.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:diposit.ub.edu:2445/219620","is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/219620","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Ci\u00e8ncies Cl\u00edniques)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:diposit.ub.edu:2445/219625","is_oa":true,"landing_page_url":"https://hdl.handle.net/2445/219625","pdf_url":null,"source":{"id":"https://openalex.org/S4306401653","display_name":"Dip\u00f2sit Digital de la Universitat de Barcelona (Universitat de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71999127","host_organization_name":"Universitat de Barcelona","host_organization_lineage":["https://openalex.org/I71999127"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Articles publicats en revistes (Ci\u00e8ncies Cl\u00edniques)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae645","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae645","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae645/61090987/bbae645.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1652175984","display_name":"Abordaje de los retos actuales en el diagn\u00f3stico gen\u00e9tico del c\u00e1ncer hereditario mediante an\u00e1lisis integrativo de datos moleculares, cl\u00ednicos y poblacionales","funder_award_id":"PI19/00553","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G3523929155","display_name":null,"funder_award_id":"PI19/00553","funder_id":"https://openalex.org/F4320315803","funder_display_name":"Centres de Recerca de Catalunya"},{"id":"https://openalex.org/G5481221734","display_name":"Evaluaci\u00f3n de la VIabilidad y coste-efectividad de un cribado de Variantes constitucionales EN una cohorte prospectiva de pacientes con C\u00c1Ncer (VIVEN-CAN)","funder_award_id":"PI23/00017","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G5718199634","display_name":null,"funder_award_id":"202031-10","funder_id":"https://openalex.org/F4320310701","funder_display_name":"Fundaci\u00f3 la Marat\u00f3 de TV3"},{"id":"https://openalex.org/G8104449165","display_name":null,"funder_award_id":"CB16/12/00234","funder_id":"https://openalex.org/F4320328325","funder_display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer"}],"funders":[{"id":"https://openalex.org/F4320310701","display_name":"Fundaci\u00f3 la Marat\u00f3 de TV3","ror":"https://ror.org/00t5xc355"},{"id":"https://openalex.org/F4320315803","display_name":"Centres de Recerca de Catalunya","ror":null},{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320326164","display_name":"Medizinische Universit\u00e4t Innsbruck","ror":"https://ror.org/03pt86f80"},{"id":"https://openalex.org/F4320327491","display_name":"Universit\u00e4t Innsbruck","ror":"https://ror.org/054pv6659"},{"id":"https://openalex.org/F4320328325","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de C\u00e1ncer","ror":null},{"id":"https://openalex.org/F4320334830","display_name":"Ag\u00e8ncia de Gesti\u00f3 d'Ajuts Universitaris i de Recerca","ror":"https://ror.org/01n4pqe45"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335503","display_name":"Departament de Salut, Generalitat de Catalunya","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405307701.pdf","grobid_xml":"https://content.openalex.org/works/W4405307701.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1990598085","https://openalex.org/W2034197594","https://openalex.org/W2065719208","https://openalex.org/W2083870688","https://openalex.org/W2089607987","https://openalex.org/W2103441770","https://openalex.org/W2107751484","https://openalex.org/W2110374888","https://openalex.org/W2115437482","https://openalex.org/W2133257334","https://openalex.org/W2175981288","https://openalex.org/W2259890056","https://openalex.org/W2337209831","https://openalex.org/W2338102768","https://openalex.org/W2396849069","https://openalex.org/W2512464499","https://openalex.org/W2551190949","https://openalex.org/W2570522939","https://openalex.org/W2593229630","https://openalex.org/W2608516201","https://openalex.org/W2619543228","https://openalex.org/W2745822627","https://openalex.org/W2915553291","https://openalex.org/W2951377742","https://openalex.org/W2952165232","https://openalex.org/W3036487724","https://openalex.org/W3116576683","https://openalex.org/W3125141729","https://openalex.org/W3196621914","https://openalex.org/W4225740064","https://openalex.org/W4282823637","https://openalex.org/W4283521032","https://openalex.org/W4285239049","https://openalex.org/W4285798474","https://openalex.org/W4386033437","https://openalex.org/W4394666350","https://openalex.org/W6801022815","https://openalex.org/W6839031927"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"Germline":[0],"copy":[1],"number":[2],"variants":[3],"(CNVs)":[4],"play":[5],"a":[6,27,61,72,143,204],"significant":[7],"role":[8],"in":[9,156,191],"hereditary":[10],"diseases.":[11],"However,":[12],"the":[13,44,103,121,165,185,189,211],"accurate":[14],"detection":[15,194],"of":[16,64,75,105,127,158,184,188,210],"CNVs":[17,34],"from":[18,48,195],"targeted":[19],"next-generation":[20],"sequencing":[21],"(NGS)":[22],"gene":[23,93,196],"panel":[24,94,197],"data":[25,198],"remains":[26],"challenging":[28],"task.":[29],"Several":[30],"tools":[31,77],"for":[32],"calling":[33],"within":[35],"this":[36,68],"context":[37],"have":[38],"been":[39],"published":[40,65],"to":[41,119,135,145],"date,":[42],"but":[43],"available":[45],"benchmarks":[46],"suffer":[47],"limitations,":[49],"including":[50],"testing":[51,55,60],"on":[52,56,90],"simulated":[53],"data,":[54],"small":[57,62],"datasets,":[58],"and":[59,110,162,199],"subset":[63],"tools.":[66,212],"In":[67],"work,":[69],"we":[70,116,140],"conducted":[71],"comprehensive":[73],"benchmarking":[74],"12":[76],"(Atlas-CNV,":[78],"ClearCNV,":[79],"ClinCNV,":[80],"CNVkit,":[81],"Cobalt,":[82],"CODEX2,":[83],"CoNVaDING,":[84],"DECoN,":[85],"ExomeDepth,":[86],"GATK-gCNV,":[87],"panelcn.MOPS,":[88],"VisCap)":[89],"four":[91],"validated":[92],"datasets":[95],"using":[96,118,208],"their":[97,149],"default":[98],"parameters.":[99],"We":[100],"also":[101,133,172],"assessed":[102],"impact":[104],"modifying":[106],"107":[107],"tool":[108,122,129],"parameters":[109],"identified":[111],"13":[112],"parameter":[113],"values":[114],"that":[115,155],"suggest":[117],"improve":[120],"F1":[123,159],"score.":[124],"A":[125],"total":[126],"66":[128],"pair":[130],"combinations":[131],"were":[132,164],"evaluated":[134],"produce":[136],"better":[137],"meta-callers.":[138],"Furthermore,":[139],"developed":[141],"CNVbenchmarker2,":[142],"framework":[144],"help":[146],"users":[147],"perform":[148],"own":[150],"evaluations.":[151],"Our":[152],"results":[153,178],"indicated":[154],"terms":[157],"score,":[160],"ClinCNV":[161],"GATK-gCNV":[163,171],"best":[166],"CNV":[167,193],"callers.":[168],"Regarding":[169],"sensitivity,":[170],"exhibited":[173],"particularly":[174],"high":[175],"performance.":[176],"The":[177],"presented":[179],"here":[180],"provide":[181],"an":[182],"evaluation":[183],"current":[186],"state":[187],"art":[190],"germline":[192],"can":[200],"be":[201],"used":[202],"as":[203],"reference":[205],"resource":[206],"when":[207],"any":[209]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
