{"id":"https://openalex.org/W4405307425","doi":"https://doi.org/10.1093/bib/bbae644","title":"TG-CDDPM: text-guided antimicrobial peptides generation based on conditional denoising diffusion probabilistic model","display_name":"TG-CDDPM: text-guided antimicrobial peptides generation based on conditional denoising diffusion probabilistic model","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405307425","doi":"https://doi.org/10.1093/bib/bbae644","pmid":"https://pubmed.ncbi.nlm.nih.gov/39668337"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae644","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae644/61090979/bbae644.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae644/61090979/bbae644.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067948935","display_name":"Junhang Cao","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I97750245","display_name":"Software (Spain)","ror":"https://ror.org/02ethns06","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210087817","https://openalex.org/I97750245"]}],"countries":["CN","ES"],"is_corresponding":false,"raw_author_name":"Junhang Cao","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I97750245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433082","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0001-9033-3199"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022354226","display_name":"Qiyuan Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I97750245","display_name":"Software (Spain)","ror":"https://ror.org/02ethns06","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210087817","https://openalex.org/I97750245"]}],"countries":["CN","ES"],"is_corresponding":false,"raw_author_name":"Qiyuan Yu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I97750245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046906366","display_name":"Junkai Ji","orcid":"https://orcid.org/0000-0002-1985-938X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junkai Ji","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100393880","display_name":"Jianqiang Li","orcid":"https://orcid.org/0000-0003-1995-9249"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianqiang Li","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011186506","display_name":"Shan He","orcid":"https://orcid.org/0000-0003-1694-1465"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shan He","raw_affiliation_strings":["School of Computer Science, University of Birmingham , Birmingham B15 2TT,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Birmingham , Birmingham B15 2TT,","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Engineering Laboratory for Big Data System Computing Technology, Shenzhen University , Shenzhen 518060,","institution_ids":["https://openalex.org/I180726961"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.4721,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.93271368,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.742613673210144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6728008389472961},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.664050281047821},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.47434723377227783},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.471467524766922},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.4445607662200928},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.42466360330581665},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.42013484239578247},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.4058458209037781},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1657925546169281},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.12514400482177734}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.742613673210144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6728008389472961},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.664050281047821},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.47434723377227783},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.471467524766922},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.4445607662200928},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.42466360330581665},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.42013484239578247},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.4058458209037781},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1657925546169281},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.12514400482177734},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae644","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae644/61090979/bbae644.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39668337","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39668337","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11637771","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11637771","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11637771/pdf/bbae644.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/48a13ea5-2bb1-45cf-b66a-a88ea7dead04","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/48a13ea5-2bb1-45cf-b66a-a88ea7dead04","pdf_url":"https://pure-oai.bham.ac.uk/ws/files/260564221/bbae644.pdf","source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cao, J, Zhang, J, Yu, Q, Ji, J, Li, J, He, S & Zhu, Z 2025, 'TG-CDDPM : text-guided antimicrobial peptides generation based on conditional denoising diffusion probabilistic model', Briefings in Bioinformatics, vol. 26, no. 1, bbae644. https://doi.org/10.1093/bib/bbae644","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae644","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae644","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae644/61090979/bbae644.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G2756446455","display_name":null,"funder_award_id":"62302311","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3406309395","display_name":null,"funder_award_id":"2024A1515011681","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G3675846178","display_name":null,"funder_award_id":"2022YFF1202100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4425929649","display_name":null,"funder_award_id":"62476177","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5660135745","display_name":null,"funder_award_id":"2022YFF1202100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6276227692","display_name":null,"funder_award_id":"62471310","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405307425.pdf","grobid_xml":"https://content.openalex.org/works/W4405307425.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W2021520922","https://openalex.org/W2029667189","https://openalex.org/W2064675550","https://openalex.org/W2074466695","https://openalex.org/W2152869198","https://openalex.org/W2156125289","https://openalex.org/W2171268876","https://openalex.org/W2611281850","https://openalex.org/W2779119857","https://openalex.org/W2784920021","https://openalex.org/W2797165643","https://openalex.org/W2802224083","https://openalex.org/W2807001312","https://openalex.org/W2809283005","https://openalex.org/W2842511635","https://openalex.org/W2884849385","https://openalex.org/W2911489562","https://openalex.org/W2970771982","https://openalex.org/W3027325047","https://openalex.org/W3036167779","https://openalex.org/W3042130878","https://openalex.org/W3046375318","https://openalex.org/W3048827317","https://openalex.org/W3081615418","https://openalex.org/W3091664817","https://openalex.org/W3135156311","https://openalex.org/W3136366652","https://openalex.org/W3145130117","https://openalex.org/W3159295432","https://openalex.org/W3177828909","https://openalex.org/W3193069429","https://openalex.org/W3197063311","https://openalex.org/W3212983993","https://openalex.org/W4206677002","https://openalex.org/W4226148785","https://openalex.org/W4285651992","https://openalex.org/W4289378287","https://openalex.org/W4294796304","https://openalex.org/W4297808394","https://openalex.org/W4308834846","https://openalex.org/W4309425098","https://openalex.org/W4315784590","https://openalex.org/W4318755135","https://openalex.org/W4324344300","https://openalex.org/W4362671139","https://openalex.org/W4366767049","https://openalex.org/W4366823167","https://openalex.org/W4382198814","https://openalex.org/W4382501570","https://openalex.org/W4383957026","https://openalex.org/W4385376556","https://openalex.org/W4385766067","https://openalex.org/W4396765902","https://openalex.org/W6755516803","https://openalex.org/W6779823529","https://openalex.org/W6791353385","https://openalex.org/W6862995742"],"related_works":["https://openalex.org/W4396941953","https://openalex.org/W2093104230","https://openalex.org/W2987280934","https://openalex.org/W4390874210","https://openalex.org/W4384918963","https://openalex.org/W4365211920","https://openalex.org/W2128027845","https://openalex.org/W3014948380","https://openalex.org/W4386184937","https://openalex.org/W4394728283"],"abstract_inverted_index":{"Antimicrobial":[0],"peptides":[1],"(AMPs)":[2],"have":[3,52],"emerged":[4],"as":[5,80,176],"a":[6,81,90,130],"promising":[7],"substitution":[8],"to":[9,12,56,64,99,117,139,146,155],"antibiotics":[10],"thanks":[11],"their":[13],"boarder":[14],"range":[15],"of":[16,20,69,173,183],"activities,":[17],"less":[18],"likelihood":[19],"drug":[21],"resistance,":[22],"and":[23,34,48,102,112,144,163],"low":[24],"toxicity.":[25],"Traditional":[26],"biochemical":[27],"methods":[28],"for":[29,84,121,160],"AMP":[30,58,123,161],"discovery":[31],"are":[32,115],"costly":[33],"inefficient.":[35],"Deep":[36],"generative":[37,49,158],"models,":[38],"including":[39],"the":[40,67,106,127,141,156,171,184],"long-short":[41],"term":[42],"memory":[43],"model,":[44,47,51],"variational":[45],"autoencoder":[46],"adversarial":[50],"been":[53],"widely":[54],"introduced":[55],"expedite":[57],"discovery.":[59],"However,":[60],"these":[61],"models":[62,114,159],"tend":[63],"suffer":[65],"from":[66],"lack":[68],"diversity":[70],"in":[71,150],"generating":[72],"AMPs.":[73,104],"The":[74,179],"denoising":[75,133],"diffusion":[76,134],"probabilistic":[77,135],"model":[78,136],"serves":[79],"good":[82],"candidate":[83,186],"solving":[85],"this":[86],"issue.":[87],"We":[88],"proposed":[89],"three-stage":[91],"Text-Guided":[92],"Conditional":[93],"Denoising":[94],"Diffusion":[95],"Probabilistic":[96],"Model":[97],"(TG-CDDPM)":[98],"generate":[100],"novel":[101],"homologous":[103],"In":[105,126],"first":[107],"two":[108],"stages,":[109],"contrastive":[110],"learning":[111],"inferring":[113],"crafted":[116],"create":[118],"better":[119,168],"conditions":[120],"guiding":[122],"generation,":[124,162],"respectively.":[125],"last":[128],"stage,":[129],"pre-trained":[131],"conditional":[132],"is":[137],"leveraged":[138],"enrich":[140],"peptide":[142],"knowledge":[143],"fine-tuned":[145],"learn":[147],"feature":[148],"representation":[149],"downstream.":[151],"TG-CDDPM":[152,189],"was":[153],"compared":[154],"state-of-the-art":[157],"it":[164],"demonstrated":[165],"competitive":[166],"or":[167],"performance":[169],"with":[170],"assistance":[172],"text":[174],"description":[175],"supervised":[177],"information.":[178],"membrane":[180],"penetration":[181],"capabilities":[182],"identified":[185],"AMPs":[187],"by":[188],"were":[190],"also":[191],"validated":[192],"through":[193],"molecular":[194],"weight":[195],"dynamics":[196],"experiments.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
