{"id":"https://openalex.org/W4405385644","doi":"https://doi.org/10.1093/bib/bbae641","title":"Exploring the potential of large language model\u2013based chatbots in challenges of ribosome profiling data analysis: a review","display_name":"Exploring the potential of large language model\u2013based chatbots in challenges of ribosome profiling data analysis: a review","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405385644","doi":"https://doi.org/10.1093/bib/bbae641","pmid":"https://pubmed.ncbi.nlm.nih.gov/39668339"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae641","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae641/61090993/bbae641.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae641/61090993/bbae641.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103038331","display_name":"Zheyu Ding","orcid":"https://orcid.org/0009-0002-9560-0369"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheyu Ding","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":"https://orcid.org/0009-0002-9560-0369","affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103228407","display_name":"Rong Wei","orcid":"https://orcid.org/0000-0003-2615-0851"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Wei","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113156990","display_name":"Jianing Xia","orcid":null},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianing Xia","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002382453","display_name":"Ye Mu","orcid":"https://orcid.org/0000-0002-7857-5707"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonghao Mu","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101984193","display_name":"Jiahuan Wang","orcid":"https://orcid.org/0000-0001-9575-0178"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahuan Wang","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101877249","display_name":"Yingying Lin","orcid":"https://orcid.org/0009-0008-7341-8260"},"institutions":[{"id":"https://openalex.org/I163151501","display_name":"Hangzhou Normal University","ror":"https://ror.org/014v1mr15","country_code":"CN","type":"education","lineage":["https://openalex.org/I163151501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingying Lin","raw_affiliation_strings":["Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,"],"raw_orcid":"https://orcid.org/0009-0008-7341-8260","affiliations":[{"raw_affiliation_string":"Key Laboratory of Elemene Class Anti-Cancer Chinese Medicines, Engineering Laboratory of Development and Application of Traditional Chinese Medicines, Collaborative Innovation Center of Traditional Chinese Medicines of Zhejiang Province, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]},{"raw_affiliation_string":"School of Pharmacy, Hangzhou Normal University , Hangzhou, Zhejiang 311121 ,","institution_ids":["https://openalex.org/I163151501"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I163151501"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.3996,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.70845012,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9728000164031982,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9496999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9344000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7248295545578003},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.7014914751052856},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.651121973991394},{"id":"https://openalex.org/keywords/ribosome-profiling","display_name":"Ribosome profiling","score":0.42426711320877075},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4201369285583496},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.2716749608516693},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10244348645210266},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09195461869239807}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7248295545578003},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.7014914751052856},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.651121973991394},{"id":"https://openalex.org/C182325514","wikidata":"https://www.wikidata.org/wiki/Q7322425","display_name":"Ribosome profiling","level":5,"score":0.42426711320877075},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4201369285583496},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.2716749608516693},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10244348645210266},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09195461869239807},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094506","descriptor_name":"Ribosome Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094506","descriptor_name":"Ribosome Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094506","descriptor_name":"Ribosome Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094506","descriptor_name":"Ribosome Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000094506","descriptor_name":"Ribosome Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012270","descriptor_name":"Ribosomes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014176","descriptor_name":"Protein Biosynthesis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae641","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae641/61090993/bbae641.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39668339","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39668339","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11638007","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11638007","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11638007/pdf/bbae641.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae641","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae641","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae641/61090993/bbae641.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G503560676","display_name":null,"funder_award_id":"32100620","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4405385644.pdf"},"referenced_works_count":152,"referenced_works":["https://openalex.org/W1758870984","https://openalex.org/W1963396472","https://openalex.org/W2036897871","https://openalex.org/W2071849521","https://openalex.org/W2079517684","https://openalex.org/W2086157203","https://openalex.org/W2124985265","https://openalex.org/W2149792337","https://openalex.org/W2169456326","https://openalex.org/W2175136759","https://openalex.org/W2262417550","https://openalex.org/W2290865014","https://openalex.org/W2308140312","https://openalex.org/W2319914265","https://openalex.org/W2568283323","https://openalex.org/W2601457881","https://openalex.org/W2621281388","https://openalex.org/W2741666038","https://openalex.org/W2783159655","https://openalex.org/W2890997928","https://openalex.org/W2911489562","https://openalex.org/W2931716593","https://openalex.org/W2932344418","https://openalex.org/W2939996483","https://openalex.org/W2941369448","https://openalex.org/W2944796563","https://openalex.org/W2945902794","https://openalex.org/W2950101275","https://openalex.org/W2951085267","https://openalex.org/W2951280166","https://openalex.org/W2980608747","https://openalex.org/W2990258266","https://openalex.org/W2990467171","https://openalex.org/W3014762572","https://openalex.org/W3016402588","https://openalex.org/W3016632787","https://openalex.org/W3028484854","https://openalex.org/W3028519422","https://openalex.org/W3037736302","https://openalex.org/W3046357967","https://openalex.org/W3080658843","https://openalex.org/W3088520040","https://openalex.org/W3091416888","https://openalex.org/W3091968069","https://openalex.org/W3093731430","https://openalex.org/W3127238141","https://openalex.org/W3137105683","https://openalex.org/W3160707035","https://openalex.org/W3163815563","https://openalex.org/W3164581645","https://openalex.org/W3164628811","https://openalex.org/W3184808244","https://openalex.org/W3199891602","https://openalex.org/W3207132549","https://openalex.org/W3208231941","https://openalex.org/W4206839449","https://openalex.org/W4210480008","https://openalex.org/W4210860572","https://openalex.org/W4213024683","https://openalex.org/W4224046477","https://openalex.org/W4229369171","https://openalex.org/W4281701893","https://openalex.org/W4281867072","https://openalex.org/W4282597329","https://openalex.org/W4289012951","https://openalex.org/W4289731259","https://openalex.org/W4292200726","https://openalex.org/W4295079475","https://openalex.org/W4297243391","https://openalex.org/W4297253404","https://openalex.org/W4312212221","https://openalex.org/W4313816476","https://openalex.org/W4317765709","https://openalex.org/W4317870342","https://openalex.org/W4318756796","https://openalex.org/W4320920036","https://openalex.org/W4321351832","https://openalex.org/W4322761615","https://openalex.org/W4323050332","https://openalex.org/W4323349244","https://openalex.org/W4323665351","https://openalex.org/W4324130227","https://openalex.org/W4327518740","https://openalex.org/W4327642595","https://openalex.org/W4360591931","https://openalex.org/W4361289889","https://openalex.org/W4362716434","https://openalex.org/W4368367885","https://openalex.org/W4377013461","https://openalex.org/W4379232324","https://openalex.org/W4380995257","https://openalex.org/W4381930847","https://openalex.org/W4384154780","https://openalex.org/W4384561707","https://openalex.org/W4384696778","https://openalex.org/W4385346108","https://openalex.org/W4385614921","https://openalex.org/W4385972264","https://openalex.org/W4386295882","https://openalex.org/W4386347795","https://openalex.org/W4386477610","https://openalex.org/W4386529373","https://openalex.org/W4386542010","https://openalex.org/W4386845850","https://openalex.org/W4387242094","https://openalex.org/W4387358535","https://openalex.org/W4387472906","https://openalex.org/W4387583347","https://openalex.org/W4387819650","https://openalex.org/W4388014051","https://openalex.org/W4388366635","https://openalex.org/W4388370035","https://openalex.org/W4388759569","https://openalex.org/W4388912763","https://openalex.org/W4389041771","https://openalex.org/W4389165057","https://openalex.org/W4389407755","https://openalex.org/W4390174695","https://openalex.org/W4390191916","https://openalex.org/W4390669311","https://openalex.org/W4390889611","https://openalex.org/W4391036703","https://openalex.org/W4391170193","https://openalex.org/W4391176372","https://openalex.org/W4391543168","https://openalex.org/W4391591629","https://openalex.org/W4391598881","https://openalex.org/W4391781962","https://openalex.org/W4391810774","https://openalex.org/W4392109210","https://openalex.org/W4392168151","https://openalex.org/W4392362609","https://openalex.org/W4392501374","https://openalex.org/W4392938433","https://openalex.org/W4392984569","https://openalex.org/W4393094733","https://openalex.org/W4393153069","https://openalex.org/W4393178368","https://openalex.org/W4394846681","https://openalex.org/W4396966060","https://openalex.org/W6659577852","https://openalex.org/W6731613350","https://openalex.org/W6761145704","https://openalex.org/W6798889800","https://openalex.org/W6803243727","https://openalex.org/W6849117144","https://openalex.org/W6850507425","https://openalex.org/W6853516908","https://openalex.org/W6859407820","https://openalex.org/W6861348419","https://openalex.org/W6861899283","https://openalex.org/W6879802504"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4317392263"],"abstract_inverted_index":{"Ribosome":[0],"profiling":[1],"(Ribo-seq)":[2],"provides":[3],"transcriptome-wide":[4],"insights":[5],"into":[6],"protein":[7],"synthesis":[8],"dynamics,":[9],"yet":[10],"its":[11],"analysis":[12,45,64,120],"poses":[13],"challenges,":[14],"particularly":[15],"for":[16,38,124],"nonbioinformatics":[17],"researchers.":[18],"Large":[19],"language":[20,29,84,116],"model-based":[21],"chatbots":[22,48,80],"offer":[23,110],"promising":[24],"solutions":[25],"by":[26],"leveraging":[27],"natural":[28],"processing.":[30],"This":[31],"review":[32],"explores":[33],"their":[34,88],"convergence,":[35],"highlighting":[36],"opportunities":[37],"synergy.":[39],"We":[40,86],"discuss":[41],"challenges":[42],"in":[43,91],"Ribo-seq":[44,93,119],"and":[46,65,81,102,118,128],"how":[47],"mitigate":[49],"them,":[50],"facilitating":[51],"scientific":[52],"discovery.":[53],"Through":[54],"case":[55],"studies,":[56],"we":[57],"illustrate":[58],"chatbots'":[59],"potential":[60,123],"contributions,":[61],"including":[62],"data":[63,103],"result":[66],"interpretation.":[67],"Despite":[68],"the":[69,77,82],"absence":[70],"of":[71,79,114],"applied":[72],"examples,":[73],"existing":[74],"software":[75],"underscores":[76],"value":[78],"large":[83,115],"model.":[85],"anticipate":[87],"pivotal":[89],"role":[90],"future":[92],"analysis,":[94],"overcoming":[95],"limitations.":[96],"Challenges":[97],"such":[98],"as":[99],"model":[100],"bias":[101],"privacy":[104],"require":[105],"attention,":[106],"but":[107],"emerging":[108],"trends":[109],"promise.":[111],"The":[112],"integration":[113],"models":[117],"holds":[121],"immense":[122],"advancing":[125],"translational":[126],"regulation":[127],"gene":[129],"expression":[130],"understanding.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
