{"id":"https://openalex.org/W4405222810","doi":"https://doi.org/10.1093/bib/bbae634","title":"Benchmarking recent computational tools for DNA-binding protein identification","display_name":"Benchmarking recent computational tools for DNA-binding protein identification","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4405222810","doi":"https://doi.org/10.1093/bib/bbae634","pmid":"https://pubmed.ncbi.nlm.nih.gov/39657630"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae634","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae634/60966917/bbae634.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae634/60966917/bbae634.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113299373","display_name":"Xizi Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Xizi Luo","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115078250","display_name":"Amadeus Song Yi","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Amadeus Song Yi Chi","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113367994","display_name":"Andre Huikai Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Andre Huikai Lin","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tze Jet Ong","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Tze Jet Ong","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033438760","display_name":"Chowdhury Rafeed Rahman","orcid":"https://orcid.org/0000-0001-5481-8025"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Chowdhury Rafeed Rahman","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077 ,","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5033438760"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":{"value":3922,"currency":"USD","value_usd":3922},"apc_paid":{"value":3922,"currency":"USD","value_usd":3922},"fwci":0.7797,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.70845544,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.8387316465377808},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6757506132125854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5789162516593933},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5399904251098633},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3352581858634949},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2472262978553772},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.12267330288887024}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.8387316465377808},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6757506132125854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5789162516593933},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5399904251098633},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3352581858634949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2472262978553772},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.12267330288887024},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae634","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae634/60966917/bbae634.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39657630","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39657630","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11630855","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11630855","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11630855/pdf/bbae634.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae634","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae634","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae634/60966917/bbae634.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405222810.pdf","grobid_xml":"https://content.openalex.org/works/W4405222810.grobid-xml"},"referenced_works_count":108,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1555187143","https://openalex.org/W1560724230","https://openalex.org/W1689711448","https://openalex.org/W1751428553","https://openalex.org/W1857789879","https://openalex.org/W1902237438","https://openalex.org/W1971231926","https://openalex.org/W1975292706","https://openalex.org/W1985258161","https://openalex.org/W1989037929","https://openalex.org/W1992116297","https://openalex.org/W1993220166","https://openalex.org/W1998709268","https://openalex.org/W2001101658","https://openalex.org/W2009470087","https://openalex.org/W2010688088","https://openalex.org/W2012351316","https://openalex.org/W2014050554","https://openalex.org/W2014833497","https://openalex.org/W2027364181","https://openalex.org/W2030922238","https://openalex.org/W2034937344","https://openalex.org/W2038670706","https://openalex.org/W2045777307","https://openalex.org/W2051210555","https://openalex.org/W2051872583","https://openalex.org/W2055043387","https://openalex.org/W2061680337","https://openalex.org/W2064675550","https://openalex.org/W2070980386","https://openalex.org/W2079741453","https://openalex.org/W2086802511","https://openalex.org/W2087064593","https://openalex.org/W2094764962","https://openalex.org/W2096223584","https://openalex.org/W2112796928","https://openalex.org/W2114042714","https://openalex.org/W2118978333","https://openalex.org/W2121090558","https://openalex.org/W2125079066","https://openalex.org/W2128965734","https://openalex.org/W2129237258","https://openalex.org/W2130479394","https://openalex.org/W2133036743","https://openalex.org/W2137565410","https://openalex.org/W2138122982","https://openalex.org/W2144792857","https://openalex.org/W2145084154","https://openalex.org/W2152116196","https://openalex.org/W2156125289","https://openalex.org/W2156690214","https://openalex.org/W2158714788","https://openalex.org/W2161199282","https://openalex.org/W2169178923","https://openalex.org/W2171033594","https://openalex.org/W2470414691","https://openalex.org/W2540069603","https://openalex.org/W2557383173","https://openalex.org/W2582176104","https://openalex.org/W2616246685","https://openalex.org/W2730472814","https://openalex.org/W2766430481","https://openalex.org/W2777094228","https://openalex.org/W2787894218","https://openalex.org/W2804549231","https://openalex.org/W2883467144","https://openalex.org/W2895810213","https://openalex.org/W2906946803","https://openalex.org/W2911964244","https://openalex.org/W2946492269","https://openalex.org/W2951433247","https://openalex.org/W2964015378","https://openalex.org/W2998216295","https://openalex.org/W2999309192","https://openalex.org/W3011449157","https://openalex.org/W3023211159","https://openalex.org/W3157397027","https://openalex.org/W3162386984","https://openalex.org/W3164453494","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3208740476","https://openalex.org/W3212112960","https://openalex.org/W3216847127","https://openalex.org/W4225891318","https://openalex.org/W4233056867","https://openalex.org/W4236358448","https://openalex.org/W4239510810","https://openalex.org/W4281291878","https://openalex.org/W4281738116","https://openalex.org/W4297733535","https://openalex.org/W4297734170","https://openalex.org/W4307180312","https://openalex.org/W4309506674","https://openalex.org/W4323309784","https://openalex.org/W4385245566","https://openalex.org/W4389314672","https://openalex.org/W4389326792","https://openalex.org/W4400448758","https://openalex.org/W6633435507","https://openalex.org/W6638545294","https://openalex.org/W6684773713","https://openalex.org/W6726873649","https://openalex.org/W6739901393","https://openalex.org/W6745537798","https://openalex.org/W6763868836","https://openalex.org/W7066667914"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699"],"abstract_inverted_index":{"Identification":[0],"of":[1,35,105],"DNA-binding":[2],"proteins":[3],"(DBPs)":[4],"is":[5],"a":[6,77],"crucial":[7],"task":[8],"in":[9,15,60,85],"genome":[10],"annotation,":[11],"as":[12,40,42,46,124],"it":[13],"aids":[14],"understanding":[16],"gene":[17],"regulation,":[18],"DNA":[19],"replication,":[20],"transcriptional":[21],"control,":[22],"and":[23,49,90,93,129],"various":[24],"cellular":[25],"processes.":[26],"In":[27],"this":[28,121],"paper,":[29],"we":[30,81],"conduct":[31],"an":[32],"unbiased":[33],"benchmarking":[34],"11":[36],"state-of-the-art":[37],"computational":[38,109],"tools":[39,44,110],"well":[41],"traditional":[43],"such":[45],"ScanProsite,":[47],"BLAST,":[48],"HMMER":[50],"for":[51],"identifying":[52],"DBPs.":[53],"We":[54,67,99,119],"highlight":[55],"the":[56,103,106],"data":[57],"leakage":[58],"issue":[59],"conventional":[61],"datasets":[62,71,128],"leading":[63],"to":[64,72],"inflated":[65],"performance.":[66],"introduce":[68],"new":[69],"evaluation":[70,79],"support":[73],"further":[74],"development.":[75],"Through":[76],"comprehensive":[78],"pipeline,":[80],"identify":[82],"potential":[83],"limitations":[84],"models,":[86],"feature":[87],"extraction":[88],"techniques,":[89],"training":[91],"methods,":[92],"recommend":[94],"solutions":[95],"regarding":[96],"these":[97],"issues.":[98],"show":[100],"that":[101],"combining":[102],"predictions":[104],"two":[107],"best":[108],"with":[111],"BLAST-based":[112],"prediction":[113],"significantly":[114],"enhances":[115],"DBP":[116],"identification":[117],"capability.":[118],"provide":[120],"consensus":[122],"method":[123],"user-friendly":[125],"software.":[126],"The":[127],"software":[130],"are":[131],"available":[132],"at":[133],"https://github.com/Rafeed-bot/DNA_BP_Benchmarking.":[134]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
