{"id":"https://openalex.org/W4404733499","doi":"https://doi.org/10.1093/bib/bbae627","title":"The improved de Bruijn graph for multitask learning: predicting functions, subcellular localization, and interactions of noncoding RNAs","display_name":"The improved de Bruijn graph for multitask learning: predicting functions, subcellular localization, and interactions of noncoding RNAs","publication_year":2024,"publication_date":"2024-11-22","ids":{"openalex":"https://openalex.org/W4404733499","doi":"https://doi.org/10.1093/bib/bbae627","pmid":"https://pubmed.ncbi.nlm.nih.gov/39592154"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae627","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae627","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103149394","display_name":"Yuxiao Wei","orcid":"https://orcid.org/0009-0000-0277-3769"},"institutions":[{"id":"https://openalex.org/I7350606","display_name":"Dalian Jiaotong University","ror":"https://ror.org/05gp45n31","country_code":"CN","type":"education","lineage":["https://openalex.org/I7350606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxiao Wei","raw_affiliation_strings":["College of Software, Dalian Jiaotong University ,794 Huanghe Road, Dalian 116028,","College of Software, Dalian Jiaotong University,794 Huanghe Road, Dalian 116028, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Software, Dalian Jiaotong University ,794 Huanghe Road, Dalian 116028,","institution_ids":["https://openalex.org/I7350606"]},{"raw_affiliation_string":"College of Software, Dalian Jiaotong University,794 Huanghe Road, Dalian 116028, China","institution_ids":["https://openalex.org/I7350606"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360470","display_name":"Qi Zhang","orcid":"https://orcid.org/0009-0006-9661-2416"},"institutions":[{"id":"https://openalex.org/I7350606","display_name":"Dalian Jiaotong University","ror":"https://ror.org/05gp45n31","country_code":"CN","type":"education","lineage":["https://openalex.org/I7350606"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Zhang","raw_affiliation_strings":["College of Science, Dalian Jiaotong University , 794 Huanghe Road, Dalian 116028,","College of Science, Dalian Jiaotong University, 794 Huanghe Road, Dalian 116028, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Science, Dalian Jiaotong University , 794 Huanghe Road, Dalian 116028,","institution_ids":["https://openalex.org/I7350606"]},{"raw_affiliation_string":"College of Science, Dalian Jiaotong University, 794 Huanghe Road, Dalian 116028, China","institution_ids":["https://openalex.org/I7350606"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100786347","display_name":"Liwei Liu","orcid":"https://orcid.org/0000-0003-2164-1061"},"institutions":[{"id":"https://openalex.org/I7350606","display_name":"Dalian Jiaotong University","ror":"https://ror.org/05gp45n31","country_code":"CN","type":"education","lineage":["https://openalex.org/I7350606"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Liwei Liu","raw_affiliation_strings":["College of Science, Dalian Jiaotong University , 794 Huanghe Road, Dalian 116028,","College of Science, Dalian Jiaotong University, 794 Huanghe Road, Dalian 116028, China"],"raw_orcid":"https://orcid.org/0000-0003-2164-1061","affiliations":[{"raw_affiliation_string":"College of Science, Dalian Jiaotong University , 794 Huanghe Road, Dalian 116028,","institution_ids":["https://openalex.org/I7350606"]},{"raw_affiliation_string":"College of Science, Dalian Jiaotong University, 794 Huanghe Road, Dalian 116028, China","institution_ids":["https://openalex.org/I7350606"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100786347"],"corresponding_institution_ids":["https://openalex.org/I7350606"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.4453,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65461102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6922361850738525},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.6895418763160706},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.5694306492805481},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5644330978393555},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.5222959518432617},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45114490389823914},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42159533500671387},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.37081438302993774},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3513930141925812},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2542877793312073},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15044239163398743},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12922191619873047},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12120166420936584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6922361850738525},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6895418763160706},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.5694306492805481},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5644330978393555},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.5222959518432617},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45114490389823914},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42159533500671387},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37081438302993774},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3513930141925812},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2542877793312073},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15044239163398743},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12922191619873047},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12120166420936584},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae627","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39592154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39592154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11596098","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11596098","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11596098/pdf/bbae627.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae627","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae627","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1807324513","https://openalex.org/W1951403192","https://openalex.org/W2006751864","https://openalex.org/W2081534563","https://openalex.org/W2107648167","https://openalex.org/W2113145584","https://openalex.org/W2128034264","https://openalex.org/W2141157874","https://openalex.org/W2172649569","https://openalex.org/W2174181728","https://openalex.org/W2462108616","https://openalex.org/W2508362099","https://openalex.org/W2799341160","https://openalex.org/W2808777650","https://openalex.org/W2898440040","https://openalex.org/W2899028887","https://openalex.org/W2907789789","https://openalex.org/W2946035471","https://openalex.org/W2950673314","https://openalex.org/W2962928958","https://openalex.org/W2999336918","https://openalex.org/W3005454931","https://openalex.org/W3049002444","https://openalex.org/W3082620742","https://openalex.org/W3094116963","https://openalex.org/W3143789190","https://openalex.org/W3212049797","https://openalex.org/W3215060724","https://openalex.org/W3217454473","https://openalex.org/W4200110750","https://openalex.org/W4210567506","https://openalex.org/W4285076853","https://openalex.org/W4294992958","https://openalex.org/W4307502334","https://openalex.org/W4310665480","https://openalex.org/W4312094581","https://openalex.org/W4324344331","https://openalex.org/W4380792423","https://openalex.org/W4381157939","https://openalex.org/W4386316616","https://openalex.org/W4389127855","https://openalex.org/W4389918314","https://openalex.org/W4390066222","https://openalex.org/W4390872292","https://openalex.org/W4394014430","https://openalex.org/W4399385694","https://openalex.org/W6676544178","https://openalex.org/W6754005058"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W2354744388","https://openalex.org/W3125399386","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W2122316710","https://openalex.org/W4301429973","https://openalex.org/W2951695076","https://openalex.org/W1964377951"],"abstract_inverted_index":{"Noncoding":[0],"RNA":[1,4,79,145],"refers":[2],"to":[3,29,99,196],"that":[5,76],"does":[6],"not":[7],"encode":[8],"proteins.":[9],"The":[10,188],"lncRNA":[11],"and":[12,22,44,57,103,127,149,178,185,199,204],"miRNA":[13],"it":[14],"contains":[15],"play":[16],"crucial":[17],"regulatory":[18],"roles":[19],"in":[20,60,119,158,171,182],"organisms,":[21],"their":[23],"aberrant":[24],"expression":[25],"is":[26,193],"closely":[27],"related":[28,125],"various":[30,62,197,208],"diseases.":[31],"Traditional":[32],"experimental":[33],"methods":[34],"for":[35],"validating":[36],"the":[37,83,90,113,134,154,164,172,175,202],"interactions":[38],"of":[39,64,137,144,207],"these":[40],"RNAs":[41],"have":[42],"limitations,":[43],"existing":[45,156],"prediction":[46,143],"models":[47,157],"exhibit":[48],"relatively":[49],"limited":[50],"functionality,":[51],"relying":[52],"on":[53],"isolated":[54],"feature":[55],"extraction":[56],"performing":[58],"poorly":[59],"handling":[61],"types":[63],"small":[65],"sample":[66],"tasks.":[67,139],"This":[68,140],"paper":[69,121],"proposes":[70],"an":[71],"improved":[72,91,189],"de":[73,92,190],"Bruijn":[74,93,191],"graph":[75,84,94,96,192],"can":[77,122,200],"inject":[78],"structural":[80,205],"information":[81,206],"into":[82,211],"while":[85],"preserving":[86],"sequence":[87,203],"information.":[88],"Furthermore,":[89],"enables":[95,141],"neural":[97],"networks":[98],"learn":[100],"broader":[101],"dependencies":[102],"correlations":[104],"among":[105],"data":[106],"by":[107,132],"introducing":[108],"richer":[109],"edge":[110],"relationships.":[111],"Meanwhile,":[112],"multitask":[114,142],"learning":[115],"model,":[116],"DVMnet,":[117],"proposed":[118],"this":[120,159],"handle":[123],"multiple":[124],"tasks,":[126],"we":[128],"optimize":[129],"model":[130],"parameters":[131],"integrating":[133],"total":[135],"loss":[136],"three":[138],"interactions,":[146],"disease":[147],"associations,":[148],"subcellular":[150,186],"localization.":[151,187],"Compared":[152],"with":[153,167],"best":[155,165],"field,":[160],"DVMnet":[161],"has":[162],"achieved":[163],"performance":[166],"a":[168,212],"3%":[169],"improvement":[170],"area":[173],"under":[174],"curve":[176],"value":[177],"demonstrates":[179],"robust":[180],"results":[181],"predicting":[183],"diseases":[184],"also":[194],"applicable":[195],"scenarios":[198],"unify":[201],"nucleic":[209],"acids":[210],"single":[213],"graph.":[214]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}