{"id":"https://openalex.org/W4404571491","doi":"https://doi.org/10.1093/bib/bbae599","title":"RiceSNP-BST: a deep learning framework for predicting biotic stress\u2013associated SNPs in rice","display_name":"RiceSNP-BST: a deep learning framework for predicting biotic stress\u2013associated SNPs in rice","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404571491","doi":"https://doi.org/10.1093/bib/bbae599","pmid":"https://pubmed.ncbi.nlm.nih.gov/39562160"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae599","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae599","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Jiajun Xu","orcid":"https://orcid.org/0009-0008-0712-0167"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajun Xu","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0009-0008-0712-0167","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019838907","display_name":"Yujia Gao","orcid":"https://orcid.org/0000-0001-6090-3090"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujia Gao","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102202779","display_name":"Quan Lu","orcid":"https://orcid.org/0009-0004-6802-0443"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Lu","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0009-0004-6802-0443","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048805069","display_name":"Renyi Zhang","orcid":"https://orcid.org/0000-0002-3647-1416"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Renyi Zhang","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113399232","display_name":"Jianfeng Gui","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianfeng Gui","raw_affiliation_strings":["Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101416654","display_name":"Xiaoshuang Liu","orcid":"https://orcid.org/0000-0002-8829-7245"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoshuang Liu","raw_affiliation_strings":["Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044447237","display_name":"Zhenyu Yue","orcid":"https://orcid.org/0000-0002-9370-2540"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Yue","raw_affiliation_strings":["Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,"],"raw_orcid":"https://orcid.org/0000-0002-9370-2540","affiliations":[{"raw_affiliation_string":"Anhui Agricultural University , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Anhui Agricultural University , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"Research Center for Biological Breeding Technology , Advance Academy, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]},{"raw_affiliation_string":"School of Information and Artificial Intelligence , Anhui Provincial Engineering Research Center for Beidou Precision Agriculture Information, , 130, Changjiang West Road, Hefei, Anhui Province 230036 ,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7958,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72673888,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6521451473236084},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47999709844589233},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47889581322669983},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4625605344772339},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44725799560546875},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.4417068660259247},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.43946611881256104},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.43658146262168884},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.43003934621810913},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4292141795158386},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42543017864227295},{"id":"https://openalex.org/keywords/biotic-stress","display_name":"Biotic stress","score":0.4245702028274536},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3530057668685913},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27924442291259766},{"id":"https://openalex.org/keywords/abiotic-stress","display_name":"Abiotic stress","score":0.24418553709983826},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.21156024932861328},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12420645356178284}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6521451473236084},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47999709844589233},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47889581322669983},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4625605344772339},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44725799560546875},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.4417068660259247},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.43946611881256104},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.43658146262168884},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.43003934621810913},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4292141795158386},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42543017864227295},{"id":"https://openalex.org/C146926016","wikidata":"https://www.wikidata.org/wiki/Q3500367","display_name":"Biotic stress","level":4,"score":0.4245702028274536},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3530057668685913},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27924442291259766},{"id":"https://openalex.org/C89519541","wikidata":"https://www.wikidata.org/wiki/Q4667893","display_name":"Abiotic stress","level":3,"score":0.24418553709983826},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.21156024932861328},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12420645356178284}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae599","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39562160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39562160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11576077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11576077","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11576077/pdf/bbae599.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae599","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae599","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2543759693","display_name":null,"funder_award_id":"62472005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6253636927","display_name":null,"funder_award_id":"62102004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1148388872","https://openalex.org/W1709815505","https://openalex.org/W1966967813","https://openalex.org/W2011574519","https://openalex.org/W2060530033","https://openalex.org/W2069520341","https://openalex.org/W2075417464","https://openalex.org/W2076243827","https://openalex.org/W2106475915","https://openalex.org/W2170747616","https://openalex.org/W2194775991","https://openalex.org/W2198606573","https://openalex.org/W2502949459","https://openalex.org/W2558561667","https://openalex.org/W2626535872","https://openalex.org/W2760991039","https://openalex.org/W2769058621","https://openalex.org/W2793168264","https://openalex.org/W2805361563","https://openalex.org/W2807228729","https://openalex.org/W2889104897","https://openalex.org/W2900648630","https://openalex.org/W2905051475","https://openalex.org/W2913668833","https://openalex.org/W2915920015","https://openalex.org/W2951189885","https://openalex.org/W2962862931","https://openalex.org/W2962876716","https://openalex.org/W2966369432","https://openalex.org/W2978057278","https://openalex.org/W2980975636","https://openalex.org/W2981502071","https://openalex.org/W3011307549","https://openalex.org/W3012909962","https://openalex.org/W3014349878","https://openalex.org/W3116664634","https://openalex.org/W3127238141","https://openalex.org/W3129125493","https://openalex.org/W3130970563","https://openalex.org/W3139240024","https://openalex.org/W3139489282","https://openalex.org/W3147704235","https://openalex.org/W3157375661","https://openalex.org/W3174619174","https://openalex.org/W4211064437","https://openalex.org/W4212836002","https://openalex.org/W4214613209","https://openalex.org/W4225671220","https://openalex.org/W4226350826","https://openalex.org/W4280629613","https://openalex.org/W4293149883","https://openalex.org/W4295951927","https://openalex.org/W4296619353","https://openalex.org/W4306871112","https://openalex.org/W4308775252","https://openalex.org/W4315864628","https://openalex.org/W4316339774","https://openalex.org/W4365515267","https://openalex.org/W4382490702","https://openalex.org/W4386305688","https://openalex.org/W4386437475","https://openalex.org/W4389142474","https://openalex.org/W4391693196","https://openalex.org/W4400570053","https://openalex.org/W6687483927","https://openalex.org/W6737947904","https://openalex.org/W6766041248"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344"],"abstract_inverted_index":{"Rice":[0],"consistently":[1],"faces":[2],"significant":[3,90],"threats":[4],"from":[5,85,166],"biotic":[6,128],"stresses,":[7],"such":[8],"as":[9],"fungi,":[10],"bacteria,":[11],"pests,":[12],"and":[13,17,36,65,82,159,171],"viruses.":[14],"Consequently,":[15],"accurately":[16],"rapidly":[18],"identifying":[19],"previously":[20],"unknown":[21],"single-nucleotide":[22],"polymorphisms":[23],"(SNPs)":[24],"in":[25,69,79,92,190,194],"the":[26,37,43,63,95,138,142,167,177,181,186],"rice":[27,34,48,107,127],"genome":[28,192,210],"is":[29],"a":[30,197],"critical":[31],"challenge":[32],"for":[33,106,201],"research":[35,60],"development":[38],"of":[39,46,67,98,180,188],"resistant":[40],"varieties.":[41],"However,":[42],"limited":[44],"availability":[45],"high-quality":[47],"genotype":[49],"data":[50],"has":[51,57,204],"hindered":[52],"this":[53,111],"research.":[54,108,211],"Deep":[55],"learning":[56],"transformed":[58],"biological":[59,70,104,178],"by":[61,133],"facilitating":[62],"prediction":[64,193],"analysis":[66],"SNPs":[68,124],"sequence":[71],"data.":[72],"Convolutional":[73],"neural":[74],"networks":[75],"are":[76],"especially":[77],"effective":[78],"extracting":[80],"structural":[81],"local":[83],"features":[84,165],"DNA":[86,169],"sequences,":[87],"leading":[88],"to":[89,122,175,207],"advancements":[91],"genomics.":[93],"Nevertheless,":[94],"expanding":[96],"catalog":[97],"genome-wide":[99],"association":[100],"studies":[101],"provides":[102],"valuable":[103],"insights":[105],"Expanding":[109],"on":[110,154],"idea,":[112],"we":[113,163],"introduce":[114],"RiceSNP-BST,":[115],"an":[116,155],"automatic":[117],"architecture":[118],"search":[119],"framework":[120],"designed":[121],"predict":[123],"associated":[125],"with":[126],"stress":[129],"traits":[130],"(BST-associated":[131],"SNPs)":[132],"integrating":[134],"multidimensional":[135],"features.":[136],"Notably,":[137],"model":[139],"successfully":[140],"innovates":[141],"datasets,":[143],"offering":[144],"more":[145],"precision":[146],"than":[147],"state-of-the-art":[148],"methods":[149],"while":[150],"demonstrating":[151],"good":[152],"performance":[153],"independent":[156],"test":[157],"set":[158],"cross-species":[160],"datasets.":[161],"Additionally,":[162],"extracted":[164],"original":[168],"sequences":[170],"employed":[172],"causal":[173],"inference":[174],"enhance":[176],"interpretability":[179],"model.":[182],"This":[183],"study":[184],"highlights":[185],"potential":[187],"RiceSNP-BST":[189,202],"advancing":[191],"rice.":[195],"Furthermore,":[196],"user-friendly":[198],"web":[199],"server":[200],"(http://rice-snp-bst.aielab.cc)":[203],"been":[205],"developed":[206],"support":[208],"broader":[209]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
