{"id":"https://openalex.org/W4404637714","doi":"https://doi.org/10.1093/bib/bbae593","title":"AutoXAI4Omics: an automated explainable AI tool for omics and tabular data","display_name":"AutoXAI4Omics: an automated explainable AI tool for omics and tabular data","publication_year":2024,"publication_date":"2024-11-01","ids":{"openalex":"https://openalex.org/W4404637714","doi":"https://doi.org/10.1093/bib/bbae593","pmid":"https://pubmed.ncbi.nlm.nih.gov/39576223"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae593","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae593","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae593/60786307/bbae593.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae593/60786307/bbae593.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026880324","display_name":"James Strudwick","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Strudwick","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040018442","display_name":"Laura\u2010Jayne Gardiner","orcid":"https://orcid.org/0000-0002-9177-4452"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Laura-Jayne Gardiner","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012611102","display_name":"Kate E Denning-James","orcid":"https://orcid.org/0000-0001-8265-5905"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kate Denning-James","raw_affiliation_strings":["Earlham Institute , Norwich Research Park, Colney Lane, Norwich NR4 7UZ"],"raw_orcid":"https://orcid.org/0000-0001-8265-5905","affiliations":[{"raw_affiliation_string":"Earlham Institute , Norwich Research Park, Colney Lane, Norwich NR4 7UZ","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054652878","display_name":"Niina Haiminen","orcid":"https://orcid.org/0000-0002-8663-1019"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Niina Haiminen","raw_affiliation_strings":["IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","institution_ids":["https://openalex.org/I1341412227"]},{"raw_affiliation_string":"IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086556889","display_name":"A.C. Evans","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ashley Evans","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026844834","display_name":"Jennifer Kelly","orcid":"https://orcid.org/0009-0004-5205-2694"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jennifer Kelly","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039104079","display_name":"Matthew Madgwick","orcid":"https://orcid.org/0000-0002-7901-416X"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Madgwick","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068361263","display_name":"Filippo Utro","orcid":"https://orcid.org/0000-0003-3226-7642"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Filippo Utro","raw_affiliation_strings":["IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States"],"raw_orcid":"https://orcid.org/0000-0003-3226-7642","affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","institution_ids":["https://openalex.org/I1341412227"]},{"raw_affiliation_string":"IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078676482","display_name":"Ed Seabolt","orcid":"https://orcid.org/0000-0002-2286-0226"},"institutions":[{"id":"https://openalex.org/I4210085935","display_name":"IBM Research - Almaden","ror":"https://ror.org/005w8dd04","country_code":"US","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210085935","https://openalex.org/I4210114115"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ed Seabolt","raw_affiliation_strings":["IBM Research, Almaden , 650 Harry Rd, San Jose, CA 95120 ,","IBM Research, Almaden, 650 Harry Rd, San Jose, CA 95120, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Almaden , 650 Harry Rd, San Jose, CA 95120 ,","institution_ids":["https://openalex.org/I4210085935"]},{"raw_affiliation_string":"IBM Research, Almaden, 650 Harry Rd, San Jose, CA 95120, United States","institution_ids":["https://openalex.org/I4210085935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022712925","display_name":"Christopher C. Gibson","orcid":"https://orcid.org/0009-0000-1052-9723"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Gibson","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bharat Bedi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bharat Bedi","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109971283","display_name":"Daniel Clayton","orcid":"https://orcid.org/0009-0008-0921-3658"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel Clayton","raw_affiliation_strings":["STFC, The Hartree Centre, Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","STFC, The Hartree Centre, Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"STFC, The Hartree Centre, Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"STFC, The Hartree Centre, Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ciaron Howell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ciaron Howell","raw_affiliation_strings":["STFC, The Hartree Centre, Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","STFC, The Hartree Centre, Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"STFC, The Hartree Centre, Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"STFC, The Hartree Centre, Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025497346","display_name":"Laxmi Parida","orcid":"https://orcid.org/0000-0002-7872-5074"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laxmi Parida","raw_affiliation_strings":["IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM T.J. Watson Research Center , 1101 Kitchawan Rd, Yorktown Heights, NY 10598 ,","institution_ids":["https://openalex.org/I1341412227"]},{"raw_affiliation_string":"IBM T.J. Watson Research Center, 1101 Kitchawan Rd, Yorktown Heights, NY 10598, United States","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043161270","display_name":"Anna Paola Carrieri","orcid":"https://orcid.org/0000-0003-2349-1896"},"institutions":[{"id":"https://openalex.org/I4210102012","display_name":"Sci-Tech Daresbury","ror":"https://ror.org/015ff4823","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210102012"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Anna Paola Carrieri","raw_affiliation_strings":["IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-2349-1896","affiliations":[{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury , Keckwick Lane, Daresbury, Warrington WA4 4AD ,","institution_ids":["https://openalex.org/I4210102012"]},{"raw_affiliation_string":"IBM Research Europe, The Hartree Centre - Sci-Tech Daresbury, Keckwick Lane, Daresbury, Warrington WA4 4AD, United Kingdom","institution_ids":["https://openalex.org/I4210102012"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043161270"],"corresponding_institution_ids":["https://openalex.org/I4210102012"],"apc_list":{"value":3885,"currency":"USD","value_usd":3885},"apc_paid":{"value":3885,"currency":"USD","value_usd":3885},"fwci":3.8159,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.94682919,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7728062272071838},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6098505258560181},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5868294835090637},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5076996088027954},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49551689624786377},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4839054048061371},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.46235689520835876},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.45870932936668396},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40652692317962646},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.338630735874176},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09044390916824341}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7728062272071838},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6098505258560181},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5868294835090637},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5076996088027954},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49551689624786377},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4839054048061371},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.46235689520835876},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.45870932936668396},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40652692317962646},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.338630735874176},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09044390916824341},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae593","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae593","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae593/60786307/bbae593.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39576223","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39576223","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11583442","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11583442","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11583442/pdf/bbae593.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae593","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae593","pdf_url":"https://academic.oup.com/bib/article-pdf/26/1/bbae593/60786307/bbae593.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4002067326","display_name":"Data science to feed a changing world: superior drought tolerance in nutritious traditional beans","funder_award_id":"2578607","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334632","display_name":"Science and Technology Facilities Council","ror":"https://ror.org/057g20z61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404637714.pdf","grobid_xml":"https://content.openalex.org/works/W4404637714.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1579064675","https://openalex.org/W1972639841","https://openalex.org/W2009178411","https://openalex.org/W2011301426","https://openalex.org/W2026951628","https://openalex.org/W2048539023","https://openalex.org/W2101234009","https://openalex.org/W2131271579","https://openalex.org/W2272593386","https://openalex.org/W2295598076","https://openalex.org/W2320563460","https://openalex.org/W2465681871","https://openalex.org/W2521200999","https://openalex.org/W2595225069","https://openalex.org/W2652074165","https://openalex.org/W2746949165","https://openalex.org/W2766045568","https://openalex.org/W2887136521","https://openalex.org/W2889664156","https://openalex.org/W2899742765","https://openalex.org/W2921271640","https://openalex.org/W2944658903","https://openalex.org/W3045623890","https://openalex.org/W3111732785","https://openalex.org/W3130450512","https://openalex.org/W3133340472","https://openalex.org/W3134848807","https://openalex.org/W3135524127","https://openalex.org/W3138695637","https://openalex.org/W3143063265","https://openalex.org/W3150635270","https://openalex.org/W3158315925","https://openalex.org/W3166420679","https://openalex.org/W3177828909","https://openalex.org/W3185306500","https://openalex.org/W3190056338","https://openalex.org/W3190187338","https://openalex.org/W4200408092","https://openalex.org/W4212820494","https://openalex.org/W4213237113","https://openalex.org/W4225573257","https://openalex.org/W4253769458","https://openalex.org/W4281924560","https://openalex.org/W4283325576","https://openalex.org/W4293713156","https://openalex.org/W4306818237","https://openalex.org/W4307843054","https://openalex.org/W4308775252","https://openalex.org/W4308885081","https://openalex.org/W4309941213","https://openalex.org/W4315607661","https://openalex.org/W4315620518","https://openalex.org/W4324145726","https://openalex.org/W4360862854","https://openalex.org/W4361865334","https://openalex.org/W4366262984","https://openalex.org/W4383342813","https://openalex.org/W4385490607","https://openalex.org/W4386467056","https://openalex.org/W4387234697","https://openalex.org/W4388721914","https://openalex.org/W4389166922","https://openalex.org/W6675354045","https://openalex.org/W6739629539","https://openalex.org/W6800495581","https://openalex.org/W6851188179","https://openalex.org/W6853437866","https://openalex.org/W6963074277"],"related_works":["https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W3147584709","https://openalex.org/W2961085424","https://openalex.org/W2977677679","https://openalex.org/W1972473893","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Machine":[0],"learning":[1],"(ML)":[2],"methods":[3],"offer":[4],"opportunities":[5],"for":[6,163],"gaining":[7],"insights":[8,188],"into":[9,189],"the":[10,24,34,77,92,102,147,159,187,190,196,208,216],"intricate":[11],"workings":[12],"of":[13,26,36,42,79,95,105,146,152,158,218],"complex":[14],"biological":[15,96],"systems,":[16],"and":[17,39,46,63,82,89,98,122,127,138,156,167,207],"their":[18,87],"applications":[19],"are":[20,179,193],"increasingly":[21],"prominent":[22],"in":[23,70],"analysis":[25,172,200],"omics":[27,126],"data":[28,184],"to":[29,59,91,170,181],"facilitate":[30],"tasks,":[31],"such":[32],"as":[33],"identification":[35,217],"novel":[37,219],"biomarkers":[38],"predictive":[40],"modeling":[41],"phenotypes.":[43],"For":[44],"scientists":[45],"domain":[47],"experts,":[48,143],"leveraging":[49],"user-friendly":[50],"ML":[51,154,161,171],"pipelines":[52],"can":[53,85],"be":[54],"incredibly":[55],"valuable,":[56],"enabling":[57],"them":[58],"run":[60],"sophisticated,":[61],"robust,":[62],"interpretable":[64],"models":[65],"without":[66],"requiring":[67],"in-depth":[68],"expertise":[69],"coding":[71],"or":[72],"algorithmic":[73],"optimization.":[74],"By":[75],"streamlining":[76],"process":[78],"model":[80,162],"development":[81],"training,":[83],"researchers":[84],"devote":[86],"time":[88],"energies":[90],"critical":[93],"tasks":[94,124],"interpretation":[97],"validation,":[99],"thereby":[100],"maximizing":[101],"scientific":[103,133],"impact":[104],"ML-driven":[106],"insights.":[107,221],"Here,":[108],"we":[109],"present":[110],"an":[111],"entirely":[112],"automated":[113],"open-source":[114],"explainable":[115],"AI":[116,142],"tool,":[117],"AutoXAI4Omics,":[118],"that":[119,178,192],"performs":[120],"classification":[121],"regression":[123],"from":[125],"tabular":[128],"numerical":[129],"data.":[130],"AutoXAI4Omics":[131,173,222],"accelerates":[132],"discovery":[134],"by":[135,141,195],"automating":[136],"processes":[137],"decisions":[139],"made":[140],"e.g.":[144,212],"selection":[145,157],"best":[148,160],"feature":[149,175,205],"set,":[150],"hyper-tuning":[151],"different":[153],"algorithms":[155],"a":[164],"specific":[165,182],"task":[166],"dataset.":[168],"Prior":[169],"incorporates":[174],"filtering":[176],"options":[177],"tailored":[180],"omic":[183,204],"types.":[185],"Moreover,":[186],"predictions":[191],"provided":[194],"tool":[197],"through":[198],"explainability":[199],"highlight":[201],"associations":[202],"between":[203],"values":[206],"targets":[209],"under":[210],"investigation,":[211],"predicted":[213],"phenotypes,":[214],"facilitating":[215],"actionable":[220],"is":[223],"available":[224],"at:":[225],"https://github.com/IBM/AutoXAI4Omics.":[226]},"counts_by_year":[{"year":2026,"cited_by_count":15},{"year":2025,"cited_by_count":9}],"updated_date":"2026-08-22T07:34:49.880490","created_date":"2025-10-10T00:00:00"}
