{"id":"https://openalex.org/W4404474315","doi":"https://doi.org/10.1093/bib/bbae588","title":"A gentle introduction to pangenomics","display_name":"A gentle introduction to pangenomics","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404474315","doi":"https://doi.org/10.1093/bib/bbae588","pmid":"https://pubmed.ncbi.nlm.nih.gov/39552065"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae588","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae588","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae588","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114689969","display_name":"Chelsea A Matthews","orcid":null},"institutions":[{"id":"https://openalex.org/I5681781","display_name":"University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Chelsea A Matthews","raw_affiliation_strings":["School of Agriculture , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","University of Adelaide , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,"],"affiliations":[{"raw_affiliation_string":"School of Agriculture , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","institution_ids":["https://openalex.org/I4210138055"]},{"raw_affiliation_string":"University of Adelaide , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088788062","display_name":"Nathan S. Watson\u2010Haigh","orcid":"https://orcid.org/0000-0002-7935-6151"},"institutions":[{"id":"https://openalex.org/I4210137740","display_name":"South Australian Health and Medical Research Institute","ror":"https://ror.org/03e3kts03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210137740"]},{"id":"https://openalex.org/I4210103203","display_name":"Victorian Comprehensive Cancer Centre","ror":"https://ror.org/00st91468","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210103203"]},{"id":"https://openalex.org/I4210154382","display_name":"Australian Genome Research Facility","ror":"https://ror.org/053v53919","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210154382"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nathan S Watson-Haigh","raw_affiliation_strings":["Alkahest Inc. , San Carlos, CA 94070 ,","Australian Genome Research Facility, Victorian Comprehensive Cancer Centre , Melbourne, Victoria 3000 ,","South Australian Genomics Centre, SAHMRI , North Terrace, Adelaide, South Australia 5000 ,"],"affiliations":[{"raw_affiliation_string":"Alkahest Inc. , San Carlos, CA 94070 ,","institution_ids":[]},{"raw_affiliation_string":"Australian Genome Research Facility, Victorian Comprehensive Cancer Centre , Melbourne, Victoria 3000 ,","institution_ids":["https://openalex.org/I4210154382","https://openalex.org/I4210103203"]},{"raw_affiliation_string":"South Australian Genomics Centre, SAHMRI , North Terrace, Adelaide, South Australia 5000 ,","institution_ids":["https://openalex.org/I4210137740"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085440923","display_name":"Rachel A. Burton","orcid":"https://orcid.org/0000-0002-0638-4709"},"institutions":[{"id":"https://openalex.org/I5681781","display_name":"University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]},{"id":"https://openalex.org/I4210138055","display_name":"Agriculture and Food","ror":"https://ror.org/03n17ds51","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210138055","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Rachel A Burton","raw_affiliation_strings":["School of Agriculture , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","University of Adelaide , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,"],"affiliations":[{"raw_affiliation_string":"School of Agriculture , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","institution_ids":["https://openalex.org/I4210138055"]},{"raw_affiliation_string":"University of Adelaide , Food and Wine, Waite Campus, , Urrbrae, South Australia 5064 ,","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008667130","display_name":"Anna E. Sheppard","orcid":"https://orcid.org/0000-0002-2913-0920"},"institutions":[{"id":"https://openalex.org/I5681781","display_name":"University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anna E Sheppard","raw_affiliation_strings":["School of Biological Sciences, University of Adelaide , Adelaide, South Australia 5005 ,"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, University of Adelaide , Adelaide, South Australia 5005 ,","institution_ids":["https://openalex.org/I5681781"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5114689969"],"corresponding_institution_ids":["https://openalex.org/I4210138055","https://openalex.org/I5681781"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":7.5565,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.98163598,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/glossary","display_name":"Glossary","score":0.7962204217910767},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6725142002105713},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.6211680173873901},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.6120288968086243},{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.5696041584014893},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.43861281871795654},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4328119456768036},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35608887672424316},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3501806855201721},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3290174901485443},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3117316961288452},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28440847992897034},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.24673748016357422},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12168759107589722},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07861319184303284},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.06883364915847778},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.059519052505493164}],"concepts":[{"id":"https://openalex.org/C2780031656","wikidata":"https://www.wikidata.org/wiki/Q859161","display_name":"Glossary","level":2,"score":0.7962204217910767},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6725142002105713},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.6211680173873901},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.6120288968086243},{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.5696041584014893},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.43861281871795654},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4328119456768036},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35608887672424316},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3501806855201721},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3290174901485443},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3117316961288452},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28440847992897034},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.24673748016357422},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12168759107589722},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07861319184303284},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.06883364915847778},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.059519052505493164},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae588","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae588","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39552065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39552065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11570541","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11570541","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11570541/pdf/bbae588.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae588","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae588","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":110,"referenced_works":["https://openalex.org/W1963459864","https://openalex.org/W1964353015","https://openalex.org/W1966711026","https://openalex.org/W1978981589","https://openalex.org/W1990516414","https://openalex.org/W1992711064","https://openalex.org/W2010361633","https://openalex.org/W2050449050","https://openalex.org/W2055597352","https://openalex.org/W2079327011","https://openalex.org/W2085296777","https://openalex.org/W2091328482","https://openalex.org/W2122707695","https://openalex.org/W2126273317","https://openalex.org/W2137351413","https://openalex.org/W2138122846","https://openalex.org/W2138506770","https://openalex.org/W2139049032","https://openalex.org/W2142933606","https://openalex.org/W2150550043","https://openalex.org/W2152173655","https://openalex.org/W2153325555","https://openalex.org/W2156125289","https://openalex.org/W2166637863","https://openalex.org/W2176591763","https://openalex.org/W2417071471","https://openalex.org/W2551069776","https://openalex.org/W2557651935","https://openalex.org/W2577032185","https://openalex.org/W2591562181","https://openalex.org/W2604017081","https://openalex.org/W2607597155","https://openalex.org/W2614266827","https://openalex.org/W2748918376","https://openalex.org/W2771098038","https://openalex.org/W2782908004","https://openalex.org/W2799595459","https://openalex.org/W2800434159","https://openalex.org/W2805602930","https://openalex.org/W2887781960","https://openalex.org/W2888300707","https://openalex.org/W2889065999","https://openalex.org/W2897587353","https://openalex.org/W2901214479","https://openalex.org/W2903087897","https://openalex.org/W2905278757","https://openalex.org/W2907319204","https://openalex.org/W2941338699","https://openalex.org/W2944862449","https://openalex.org/W2945365545","https://openalex.org/W2949503312","https://openalex.org/W2950122868","https://openalex.org/W2950228679","https://openalex.org/W2952366981","https://openalex.org/W2952379406","https://openalex.org/W2953281558","https://openalex.org/W2963158913","https://openalex.org/W2964679279","https://openalex.org/W2964697169","https://openalex.org/W2966929769","https://openalex.org/W2967400973","https://openalex.org/W2989100769","https://openalex.org/W2990677539","https://openalex.org/W2997125367","https://openalex.org/W2997518568","https://openalex.org/W3001282407","https://openalex.org/W3007365321","https://openalex.org/W3012393121","https://openalex.org/W3023449390","https://openalex.org/W3042744518","https://openalex.org/W3045244624","https://openalex.org/W3045745175","https://openalex.org/W3047903919","https://openalex.org/W3084380827","https://openalex.org/W3085875665","https://openalex.org/W3092652421","https://openalex.org/W3100801956","https://openalex.org/W3107493014","https://openalex.org/W3110395203","https://openalex.org/W3127872730","https://openalex.org/W3152736521","https://openalex.org/W3157263995","https://openalex.org/W3159174557","https://openalex.org/W3162276363","https://openalex.org/W3164132055","https://openalex.org/W3180766180","https://openalex.org/W3184256538","https://openalex.org/W3198690628","https://openalex.org/W3216606044","https://openalex.org/W4200597270","https://openalex.org/W4220999759","https://openalex.org/W4223416923","https://openalex.org/W4224278121","https://openalex.org/W4225510380","https://openalex.org/W4255836900","https://openalex.org/W4282972025","https://openalex.org/W4289836878","https://openalex.org/W4293860363","https://openalex.org/W4296776309","https://openalex.org/W4303684366","https://openalex.org/W4310416257","https://openalex.org/W4362660695","https://openalex.org/W4376118380","https://openalex.org/W4376133202","https://openalex.org/W4378173002","https://openalex.org/W4379508567","https://openalex.org/W4388023300","https://openalex.org/W4388927384","https://openalex.org/W4389194970","https://openalex.org/W6600222879"],"related_works":["https://openalex.org/W4232680475","https://openalex.org/W2359919953","https://openalex.org/W4285524944","https://openalex.org/W3204474833","https://openalex.org/W2357593638","https://openalex.org/W2185123802","https://openalex.org/W2987028469","https://openalex.org/W1568672371","https://openalex.org/W623980769","https://openalex.org/W2793264504"],"abstract_inverted_index":{"Pangenomes":[0],"have":[1],"emerged":[2],"in":[3,37,71,116],"response":[4],"to":[5,15,29,48,61,79,87,90,104,110],"limitations":[6],"associated":[7],"with":[8],"traditional":[9,17],"linear":[10],"reference":[11,18],"genomes.":[12],"In":[13],"contrast":[14],"a":[16,24,38,98],"that":[19],"is":[20,45,59,66],"(usually)":[21],"assembled":[22],"from":[23],"single":[25],"individual,":[26],"pangenomes":[27,106],"aim":[28],"represent":[30],"all":[31],"of":[32,40,53,100,114],"the":[33,72,80,101,108,112,117],"genomic":[34,54],"variation":[35],"found":[36],"group":[39],"organisms.":[41],"The":[42],"term":[43],"'pangenome'":[44],"currently":[46],"used":[47,103],"describe":[49,105],"multiple":[50],"different":[51],"types":[52],"information,":[55],"and":[56,74,93,96],"limited":[57],"language":[58,102],"available":[60],"differentiate":[62],"between":[63],"them.":[64],"This":[65],"frustrating":[67],"for":[68,76],"researchers":[69,77],"working":[70],"field":[73],"confusing":[75],"new":[78],"field.":[81,118],"Here,":[82],"we":[83],"provide":[84],"an":[85],"introduction":[86],"pangenomics":[88],"relevant":[89],"both":[91],"prokaryotic":[92],"eukaryotic":[94],"organisms":[95],"propose":[97],"formalization":[99],"(see":[107],"Glossary)":[109],"improve":[111],"specificity":[113],"discussion":[115]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":21}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
