{"id":"https://openalex.org/W4404341161","doi":"https://doi.org/10.1093/bib/bbae584","title":"Adversarial regularized autoencoder graph neural network for microbe-disease associations prediction","display_name":"Adversarial regularized autoencoder graph neural network for microbe-disease associations prediction","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404341161","doi":"https://doi.org/10.1093/bib/bbae584","pmid":"https://pubmed.ncbi.nlm.nih.gov/39528423"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae584","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae584/60592218/bbae584.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae584/60592218/bbae584.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108897140","display_name":"Limuxuan He","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Limuxuan He","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,"],"raw_orcid":"https://orcid.org/0009-0002-3408-5375","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210150398","display_name":"Hunan University of Finance and Economics","ror":"https://ror.org/04askxv05","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210150398"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,","School of Information Technology and Administration , Hunan University of Finance and Economics, 139, 2nd Fenglin Road, Yuelu District, Changsha, Hunan 410205,"],"raw_orcid":"https://orcid.org/0000-0001-6406-1142","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"School of Information Technology and Administration , Hunan University of Finance and Economics, 139, 2nd Fenglin Road, Yuelu District, Changsha, Hunan 410205,","institution_ids":["https://openalex.org/I4210150398"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013729700","display_name":"Qi Dai","orcid":"https://orcid.org/0000-0003-2675-6511"},"institutions":[{"id":"https://openalex.org/I1328775524","display_name":"Zhejiang Sci-Tech University","ror":"https://ror.org/03893we55","country_code":"CN","type":"education","lineage":["https://openalex.org/I1328775524"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qi Dai","raw_affiliation_strings":["College of Life Science and Medicine , Zhejiang Sci-Tech University, No. 5 Second Avenue, Xiasha Higher Education Zone, Hangzhou, Zhejiang 310018,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Medicine , Zhejiang Sci-Tech University, No. 5 Second Avenue, Xiasha Higher Education Zone, Hangzhou, Zhejiang 310018,","institution_ids":["https://openalex.org/I1328775524"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028627956","display_name":"Shuang Cheng","orcid":"https://orcid.org/0000-0003-1370-662X"},"institutions":[{"id":"https://openalex.org/I2801345734","display_name":"China Academy of Engineering Physics","ror":"https://ror.org/039vqpp67","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2801345734"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Cheng","raw_affiliation_strings":["Institute of Materials , China Academy of Engineering Physics, Huafeng Xincun No. 9, Jiangyou, Mianyang, Sichuan 621907,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Materials , China Academy of Engineering Physics, Huafeng Xincun No. 9, Jiangyou, Mianyang, Sichuan 621907,","institution_ids":["https://openalex.org/I2801345734"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038146039","display_name":"Yansu Wang","orcid":"https://orcid.org/0000-0003-1274-4958"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yansu Wang","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China, Qingshuihe Campus, 2006 Xiyuan Avenue, West District, High-tech Zone, Chengdu, Sichuan 610054,","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5108897140"],"corresponding_institution_ids":["https://openalex.org/I150229711"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.8441,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73567407,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.19699999690055847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.19699999690055847,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.16990000009536743,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.0957999974489212,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.8786128759384155},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6775140166282654},{"id":"https://openalex.org/keywords/adversarial-system","display_name":"Adversarial system","score":0.5869057774543762},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5777882933616638},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.526333749294281},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5228905081748962},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5147023797035217},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.507834255695343},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4724210500717163},{"id":"https://openalex.org/keywords/area-under-curve","display_name":"Area under curve","score":0.45317748188972473},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34199124574661255},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3217126131057739},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2087700068950653},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.17181697487831116},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1327977478504181}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.8786128759384155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6775140166282654},{"id":"https://openalex.org/C37736160","wikidata":"https://www.wikidata.org/wiki/Q1801315","display_name":"Adversarial system","level":2,"score":0.5869057774543762},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5777882933616638},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.526333749294281},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5228905081748962},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5147023797035217},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.507834255695343},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4724210500717163},{"id":"https://openalex.org/C3020225094","wikidata":"https://www.wikidata.org/wiki/Q80091","display_name":"Area under curve","level":3,"score":0.45317748188972473},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34199124574661255},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3217126131057739},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2087700068950653},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.17181697487831116},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1327977478504181},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C112705442","wikidata":"https://www.wikidata.org/wiki/Q323936","display_name":"Pharmacokinetics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae584","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae584/60592218/bbae584.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39528423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39528423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11554402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11554402","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11554402/pdf/bbae584.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae584","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae584","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae584/60592218/bbae584.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4778297822","display_name":null,"funder_award_id":"62373080","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5063593930","display_name":null,"funder_award_id":"62425107","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5133105583","display_name":null,"funder_award_id":"62131004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6392150659","display_name":null,"funder_award_id":"2022ZD0117700","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6434495396","display_name":null,"funder_award_id":"No. 62450002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G717671860","display_name":null,"funder_award_id":"2022ZD0117700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G771689064","display_name":null,"funder_award_id":"62450002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404341161.pdf","grobid_xml":"https://content.openalex.org/works/W4404341161.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1993577573","https://openalex.org/W2020722855","https://openalex.org/W2036893224","https://openalex.org/W2064633474","https://openalex.org/W2072417345","https://openalex.org/W2078770291","https://openalex.org/W2090237726","https://openalex.org/W2099147305","https://openalex.org/W2124818337","https://openalex.org/W2145336165","https://openalex.org/W2322763599","https://openalex.org/W2462108616","https://openalex.org/W2567465856","https://openalex.org/W2576267135","https://openalex.org/W2583889943","https://openalex.org/W2590194234","https://openalex.org/W2739664659","https://openalex.org/W2765928324","https://openalex.org/W2765950793","https://openalex.org/W2782017756","https://openalex.org/W2793951981","https://openalex.org/W2807176368","https://openalex.org/W2839708775","https://openalex.org/W2892502396","https://openalex.org/W2898769300","https://openalex.org/W2901312953","https://openalex.org/W2903096015","https://openalex.org/W2922817064","https://openalex.org/W2988135813","https://openalex.org/W3016614995","https://openalex.org/W3045879648","https://openalex.org/W3111343791","https://openalex.org/W3135654686","https://openalex.org/W3156977781","https://openalex.org/W3203475896","https://openalex.org/W4211248483","https://openalex.org/W4282943100","https://openalex.org/W4283203964","https://openalex.org/W4321483984","https://openalex.org/W4322773248","https://openalex.org/W4380681761","https://openalex.org/W4386860244","https://openalex.org/W4386866081","https://openalex.org/W4389802252","https://openalex.org/W4389976844","https://openalex.org/W4390563851","https://openalex.org/W4391481044","https://openalex.org/W4392373874","https://openalex.org/W4395045793","https://openalex.org/W4398179224","https://openalex.org/W4399647348","https://openalex.org/W4400680212","https://openalex.org/W4400863353","https://openalex.org/W4401184433","https://openalex.org/W4401254030","https://openalex.org/W4401602316","https://openalex.org/W4401809711","https://openalex.org/W4402128652","https://openalex.org/W4402314360"],"related_works":["https://openalex.org/W3013693939","https://openalex.org/W2566616303","https://openalex.org/W2159052453","https://openalex.org/W3131327266","https://openalex.org/W2734887215","https://openalex.org/W2502115930","https://openalex.org/W4297051394","https://openalex.org/W2752972570","https://openalex.org/W4386815338","https://openalex.org/W2145836866"],"abstract_inverted_index":{"BACKGROUND:":[0],"Microorganisms":[1],"inhabit":[2],"various":[3],"regions":[4],"of":[5,98,122,145,228,237],"the":[6,16,117,125,142,155,169,182,194,198,205,208,213,219,226],"human":[7],"body":[8],"and":[9,20,28,31,42,86,94,100,119,175,193,212,239],"significantly":[10],"contribute":[11],"to":[12,36,102,140],"numerous":[13],"diseases.":[14,87],"Predicting":[15],"associations":[17,39,56,83],"between":[18,84],"microbes":[19,85,99],"diseases":[21,101],"is":[22],"crucial":[23],"for":[24,76,81],"understanding":[25],"pathogenic":[26],"mechanisms":[27],"informing":[29],"prevention":[30],"treatment":[32],"strategies.":[33],"Biological":[34],"experiments":[35],"determine":[37],"these":[38],"are":[40],"time-consuming":[41],"costly.":[43],"Therefore,":[44],"integrating":[45],"deep":[46],"learning":[47],"with":[48,164],"biological":[49],"networks":[50],"can":[51],"efficiently":[52],"identify":[53],"potential":[54],"microbe-disease":[55,159],"on":[57,112,158,189],"a":[58,104,234],"large":[59],"scale.":[60],"METHODS:":[61],"We":[62],"propose":[63],"an":[64,109,131],"adversarial":[65,132],"regularized":[66,133],"autoencoder":[67,110,134],"graph":[68,135],"neural":[69,136],"network":[70,137],"algorithm,":[71],"named":[72],"Stacked":[73],"Adversarial":[74],"Regularization":[75],"Microbe-Disease":[77,171],"Associations":[78],"Prediction":[79],"(SARMDA),":[80],"predicting":[82],"First,":[88],"we":[89,114,129],"integrate":[90],"topological":[91,118],"structural":[92],"similarity":[93,96],"functional":[95],"metrics":[97],"construct":[103],"heterogeneous":[105],"network.":[106,127],"Then,":[107],"utilizing":[108],"based":[111],"GraphSAGE,":[113],"learn":[115],"both":[116],"attribute":[120],"representations":[121],"nodes":[123],"within":[124],"constructed":[126],"Finally,":[128],"introduce":[130],"embedding":[138],"model":[139,230],"address":[141],"inherent":[143],"limitations":[144],"traditional":[146],"GraphSAGE":[147],"autoencoders":[148],"in":[149],"capturing":[150],"global":[151],"information.":[152],"RESULTS:":[153],"Under":[154],"five-fold":[156],"cross-validation":[157],"pairs,":[160],"SARMDA":[161,188],"was":[162,191,202,210,216,231],"compared":[163],"eight":[165,221],"advanced":[166],"methods":[167],"using":[168],"Human":[170],"Association":[172],"Database":[173],"(HMDAD)":[174],"Disbiome":[176,206],"databases.":[177],"The":[178],"best":[179,195,214],"area":[180,196],"under":[181,197],"ROC":[183],"curve":[184,200],"(AUC)":[185],"achieved":[186],"by":[187],"HMDAD":[190],"0.9891$\\pm$0.0057,":[192],"precision-recall":[199],"(AUPR)":[201],"0.9902$\\pm$0.0128.":[203],"On":[204],"dataset,":[207],"AUC":[209],"0.9328$\\pm$0.0072,":[211],"AUPR":[215],"0.9233$\\pm$0.0089,":[217],"outperforming":[218],"other":[220],"MDAs":[222],"prediction":[223],"methods.":[224],"Furthermore,":[225],"effectiveness":[227],"our":[229],"demonstrated":[232],"through":[233],"detailed":[235],"analysis":[236],"asthma":[238],"inflammatory":[240],"bowel":[241],"disease":[242],"cases.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
