{"id":"https://openalex.org/W4404346546","doi":"https://doi.org/10.1093/bib/bbae578","title":"SpaGIC: graph-informed clustering in spatial transcriptomics via self-supervised contrastive learning","display_name":"SpaGIC: graph-informed clustering in spatial transcriptomics via self-supervised contrastive learning","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404346546","doi":"https://doi.org/10.1093/bib/bbae578","pmid":"https://pubmed.ncbi.nlm.nih.gov/39541189"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae578","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae578/60669427/bbae578.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae578/60669427/bbae578.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102693547","display_name":"Wei Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Liu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115595787","display_name":"Bo Wang","orcid":"https://orcid.org/0000-0002-5569-5722"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031253045","display_name":"Yuting Bai","orcid":"https://orcid.org/0009-0007-5728-5085"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuting Bai","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052169513","display_name":"Xiao Liang","orcid":"https://orcid.org/0000-0001-5476-8304"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100381619","display_name":"Xueyan Li","orcid":"https://orcid.org/0000-0002-7551-0502"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Xue","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026469278","display_name":"Jiawei Luo","orcid":"https://orcid.org/0000-0003-2385-8272"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Luo","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University , Changsha 410083 ,","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5102693547"],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.1405,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.87925566,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9498000144958496,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7697744369506836},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6656116247177124},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5739253759384155},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5614787340164185},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5540828704833984},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5483343601226807},{"id":"https://openalex.org/keywords/spatial-contextual-awareness","display_name":"Spatial contextual awareness","score":0.5173958539962769},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3926513195037842},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38873064517974854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33557599782943726},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1129608154296875},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08123815059661865}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7697744369506836},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6656116247177124},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5739253759384155},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5614787340164185},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5540828704833984},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5483343601226807},{"id":"https://openalex.org/C64754055","wikidata":"https://www.wikidata.org/wiki/Q7574053","display_name":"Spatial contextual awareness","level":2,"score":0.5173958539962769},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3926513195037842},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38873064517974854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33557599782943726},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1129608154296875},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08123815059661865},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae578","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae578/60669427/bbae578.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39541189","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39541189","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11562840","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11562840","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11562840/pdf/bbae578.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae578","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae578/60669427/bbae578.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4956348030","display_name":null,"funder_award_id":"62372165","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6549098544","display_name":null,"funder_award_id":"62032007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404346546.pdf","grobid_xml":"https://content.openalex.org/works/W4404346546.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1974565082","https://openalex.org/W2033403400","https://openalex.org/W2042789810","https://openalex.org/W2058487314","https://openalex.org/W2123273050","https://openalex.org/W2126537932","https://openalex.org/W2131681506","https://openalex.org/W2523948971","https://openalex.org/W2533012945","https://openalex.org/W2800392236","https://openalex.org/W2809368942","https://openalex.org/W2899224111","https://openalex.org/W2902652978","https://openalex.org/W2915848182","https://openalex.org/W2952383043","https://openalex.org/W2964121744","https://openalex.org/W2984472267","https://openalex.org/W3021920958","https://openalex.org/W3036371598","https://openalex.org/W3099768174","https://openalex.org/W3099810371","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3126958162","https://openalex.org/W3134482219","https://openalex.org/W3165120573","https://openalex.org/W3210002151","https://openalex.org/W4213136259","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4290154117","https://openalex.org/W4303986417","https://openalex.org/W4306406844","https://openalex.org/W4322738920","https://openalex.org/W4382239962","https://openalex.org/W4384665375","https://openalex.org/W4385612899","https://openalex.org/W4390814844","https://openalex.org/W4396213452","https://openalex.org/W6726873649"],"related_works":["https://openalex.org/W3148227991","https://openalex.org/W1486593826","https://openalex.org/W2771174107","https://openalex.org/W1536965844","https://openalex.org/W2344941099","https://openalex.org/W4322212724","https://openalex.org/W2106788855","https://openalex.org/W3081561710","https://openalex.org/W2477413883","https://openalex.org/W2463773089"],"abstract_inverted_index":{"Spatial":[0],"transcriptomics":[1,39,115,165],"technologies":[2],"enable":[3],"the":[4,15,50,102],"generation":[5],"of":[6,20,84,95,150,154],"gene":[7,25],"expression":[8],"profiles":[9],"while":[10],"preserving":[11],"spatial":[12,27,35,38,55,114,137,164],"context,":[13],"providing":[14],"potential":[16],"for":[17],"in-depth":[18],"understanding":[19],"spatial-specific":[21],"tissue":[22],"heterogeneity.":[23],"Leveraging":[24],"and":[26,74,90,143,161],"data":[28,140],"effectively":[29],"is":[30,148],"fundamental":[31],"to":[32],"accurately":[33],"identifying":[34],"domains":[36],"in":[37,132,163],"analysis.":[40],"However,":[41],"many":[42],"existing":[43,129],"methods":[44,131],"have":[45],"not":[46],"yet":[47],"fully":[48],"exploited":[49],"local":[51,91],"neighborhood":[52],"details":[53],"within":[54],"information.":[56],"To":[57],"address":[58],"this":[59],"issue,":[60],"we":[61],"introduce":[62],"SpaGIC,":[63],"a":[64],"novel":[65],"graph-based":[66],"deep":[67],"learning":[68,77],"framework":[69],"integrating":[70],"graph":[71,96],"convolutional":[72],"networks":[73],"self-supervised":[75],"contrastive":[76],"techniques.":[78],"SpaGIC":[79,111,126,147],"learns":[80],"meaningful":[81],"latent":[82],"embeddings":[83],"spots":[85],"by":[86],"maximizing":[87],"both":[88],"edge-wise":[89],"neighborhood-wise":[92],"mutual":[93],"information":[94],"structures,":[97],"as":[98,100,136],"well":[99],"minimizing":[101],"embedding":[103],"distance":[104],"between":[105],"spatially":[106],"adjacent":[107],"spots.":[108],"We":[109],"evaluated":[110],"on":[112],"seven":[113],"datasets":[116],"across":[117],"various":[118],"technology":[119],"platforms.":[120],"The":[121],"experimental":[122],"results":[123],"demonstrated":[124],"that":[125],"consistently":[127],"outperformed":[128],"state-of-the-art":[130],"several":[133],"tasks,":[134],"such":[135],"domain":[138],"identification,":[139],"denoising,":[141],"visualization,":[142],"trajectory":[144],"inference.":[145],"Additionally,":[146],"capable":[149],"performing":[151],"joint":[152],"analyses":[153],"multiple":[155],"slices,":[156],"further":[157],"underscoring":[158],"its":[159],"versatility":[160],"effectiveness":[162],"research.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8}],"updated_date":"2026-03-22T08:09:32.410652","created_date":"2025-10-10T00:00:00"}
