{"id":"https://openalex.org/W4404219622","doi":"https://doi.org/10.1093/bib/bbae575","title":"A multichannel graph neural network based on multisimilarity modality hypergraph contrastive learning for predicting unknown types of cancer biomarkers","display_name":"A multichannel graph neural network based on multisimilarity modality hypergraph contrastive learning for predicting unknown types of cancer biomarkers","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404219622","doi":"https://doi.org/10.1093/bib/bbae575","pmid":"https://pubmed.ncbi.nlm.nih.gov/39523624"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae575","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae575/60580818/bbae575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae575/60580818/bbae575.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069085710","display_name":"Xinfei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xin-Fei Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0003-0554-2936","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322699","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-4751-0708"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0002-4751-0708","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007914848","display_name":"Renchu Guan","orcid":"https://orcid.org/0000-0002-7162-7826"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Ren-Chu Guan","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0002-7162-7826","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Youyi West Road, Xi'an,710072 ,"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Youyi West Road, Xi'an,710072 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057845577","display_name":"Nan Sheng","orcid":"https://orcid.org/0000-0002-0306-9009"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Nan Sheng","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014815375","display_name":"Xuping Xie","orcid":"https://orcid.org/0000-0003-0918-016X"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xu-Ping Xie","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101032466","display_name":"Qixing Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Qi-Xing Yang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.4937,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.90254461,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9341999888420105,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9151999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.7937049865722656},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.7216094732284546},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6097174882888794},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6094242930412292},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5557406544685364},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5420594215393066},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3345707654953003},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3229821026325226},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17729142308235168},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.16719236969947815}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.7937049865722656},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.7216094732284546},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6097174882888794},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6094242930412292},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5557406544685364},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5420594215393066},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3345707654953003},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3229821026325226},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17729142308235168},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.16719236969947815},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae575","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae575/60580818/bbae575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39523624","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39523624","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11551052","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11551052","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11551052/pdf/bbae575.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae575","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae575","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae575/60580818/bbae575.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2241915452","display_name":"\u878d\u5408\u591a\u7ec4\u5b66\u6570\u636e\u7684\u80f0\u817a\u764c\u4f53\u6db2\u6807\u5fd7\u7269\u7cbe\u51c6\u6316\u6398\u4e0e\u673a\u7406\u7814\u7a76","funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G84307639","display_name":null,"funder_award_id":"No. 62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404219622.pdf","grobid_xml":"https://content.openalex.org/works/W4404219622.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W121553317","https://openalex.org/W611910056","https://openalex.org/W2016106370","https://openalex.org/W2040935952","https://openalex.org/W2046387002","https://openalex.org/W2105882193","https://openalex.org/W2117305280","https://openalex.org/W2148929244","https://openalex.org/W2149908785","https://openalex.org/W2154851992","https://openalex.org/W2158485828","https://openalex.org/W2258129851","https://openalex.org/W2607500032","https://openalex.org/W2765950793","https://openalex.org/W2766950760","https://openalex.org/W2964022491","https://openalex.org/W2969761002","https://openalex.org/W2991094260","https://openalex.org/W3025741173","https://openalex.org/W3026308742","https://openalex.org/W3098523662","https://openalex.org/W3104097132","https://openalex.org/W3179782236","https://openalex.org/W4200043367","https://openalex.org/W4234157358","https://openalex.org/W4289860439","https://openalex.org/W4291825018","https://openalex.org/W4296394114","https://openalex.org/W4313406530","https://openalex.org/W4361017398","https://openalex.org/W4362594096","https://openalex.org/W4362673398","https://openalex.org/W4385288569","https://openalex.org/W4385475774","https://openalex.org/W4385564848","https://openalex.org/W4386248120","https://openalex.org/W4387516871","https://openalex.org/W4388698606","https://openalex.org/W4390706181","https://openalex.org/W4391212305","https://openalex.org/W4391538422","https://openalex.org/W4392393056","https://openalex.org/W4393158863","https://openalex.org/W4400390698","https://openalex.org/W4401009333","https://openalex.org/W6604803540","https://openalex.org/W6750729320","https://openalex.org/W6855396924"],"related_works":["https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W1948107826","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998","https://openalex.org/W2963081352","https://openalex.org/W4376608938","https://openalex.org/W2472555608"],"abstract_inverted_index":{"Identifying":[0],"potential":[1,227],"cancer":[2,117,194,208,229],"biomarkers":[3,65,195],"is":[4],"a":[5,12,45,58,86,99,155,203],"key":[6],"task":[7],"in":[8,80,131,222,228],"biomedical":[9],"research,":[10],"providing":[11],"promising":[13],"avenue":[14],"for":[15,112],"the":[16,49,132,139,151,182,197,210],"diagnosis":[17],"and":[18,23,63,73,147,166,181,225],"treatment":[19],"of":[20,44,51,66,78,116,142,145,193,200,213],"human":[21],"tumors":[22],"cancers.":[24],"In":[25],"recent":[26],"years,":[27],"several":[28],"machine":[29],"learning-based":[30],"RNA-disease":[31],"association":[32,179],"prediction":[33,91],"techniques":[34],"have":[35],"emerged.":[36],"However,":[37],"they":[38],"primarily":[39],"focus":[40],"on":[41,105,188,206],"modeling":[42,150],"relationships":[43],"single":[46],"type,":[47],"overlooking":[48],"importance":[50],"gaining":[52],"insights":[53,137,218],"into":[54,128,138,219],"molecular":[55,82,173,220],"behaviors":[56],"from":[57,163,177],"complete":[59,183],"regulatory":[60,83,133,168,184,223],"network":[61,103],"perspective":[62],"discovering":[64],"unknown":[67,114],"types.":[68],"Furthermore,":[69,202],"effectively":[70],"handling":[71],"local":[72,129],"global":[74],"topological":[75,140],"structural":[76],"information":[77],"nodes":[79],"biological":[81],"graphs":[84],"remains":[85],"challenge":[87],"to":[88,126,215],"improving":[89],"biomarker":[90,230],"performance.":[92],"To":[93],"address":[94],"these":[95],"limitations,":[96],"we":[97],"propose":[98],"multichannel":[100,156],"graph":[101,157],"neural":[102],"based":[104],"multisimilarity":[106,121,152],"modality":[107,122],"hypergraph":[108,123],"contrastive":[109,124],"learning":[110,125,135],"(MML-MGNN)":[111],"predicting":[113,189],"types":[115,144,192],"biomarkers.":[118],"MML-MGNN":[119,170,214],"leverages":[120],"delve":[127],"associations":[130,165],"network,":[134],"diverse":[136],"structures":[141],"multiple":[143],"similarities,":[146],"then":[148],"globally":[149],"modalities":[153],"through":[154],"autoencoder.":[158],"By":[159],"combining":[160],"representations":[161],"obtained":[162],"local-level":[164],"global-level":[167],"graphs,":[169],"can":[171],"acquire":[172],"feature":[174],"descriptors":[175],"benefiting":[176],"multitype":[178],"properties":[180],"network.":[185],"Experimental":[186],"results":[187],"three":[190],"different":[191],"demonstrate":[196],"outstanding":[198,211],"performance":[199],"MML-MGNN.":[201],"case":[204],"study":[205],"gastric":[207],"underscores":[209],"ability":[212],"gain":[216],"deeper":[217],"mechanisms":[221],"networks":[224],"prominent":[226],"prediction.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
