{"id":"https://openalex.org/W4404260628","doi":"https://doi.org/10.1093/bib/bbae573","title":"A multi-task prediction method based on neighborhood structure embedding and signed graph representation learning to infer the relationship between circRNA, miRNA, and cancer","display_name":"A multi-task prediction method based on neighborhood structure embedding and signed graph representation learning to infer the relationship between circRNA, miRNA, and cancer","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404260628","doi":"https://doi.org/10.1093/bib/bbae573","pmid":"https://pubmed.ncbi.nlm.nih.gov/39523622"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae573","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae573","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae573/60580788/bbae573.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae573/60580788/bbae573.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":true,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069085710","display_name":"Xinfei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xin-Fei Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0003-0554-2936","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322699","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-4751-0708"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":true,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0002-4751-0708","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007914848","display_name":"Renchu Guan","orcid":"https://orcid.org/0000-0002-7162-7826"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Ren-Chu Guan","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":"https://orcid.org/0000-0002-7162-7826","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057845577","display_name":"Nan Sheng","orcid":"https://orcid.org/0000-0002-0306-9009"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Nan Sheng","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014815375","display_name":"Xuping Xie","orcid":"https://orcid.org/0000-0003-0918-016X"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xu-Ping Xie","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115594996","display_name":"Lei Wang","orcid":"https://orcid.org/0009-0007-1098-7557"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100675786","display_name":"Ziqi Zhao","orcid":"https://orcid.org/0009-0003-6776-3029"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Zi-qi Zhao","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100322699","https://openalex.org/A5101463922"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210108141"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.6483,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.67170279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.4771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.4771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.09889999777078629,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.06689999997615814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6637980937957764},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.639710545539856},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5913580060005188},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5781142115592957},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5699197053909302},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5198888778686523},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4945697486400604},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3347119688987732},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.30836066603660583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6637980937957764},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.639710545539856},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5913580060005188},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5781142115592957},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5699197053909302},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5198888778686523},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4945697486400604},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3347119688987732},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.30836066603660583},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae573","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae573","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae573/60580788/bbae573.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39523622","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39523622","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11551054","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11551054","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11551054/pdf/bbae573.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae573","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae573","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae573/60580788/bbae573.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.550000011920929,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2241915452","display_name":"\u878d\u5408\u591a\u7ec4\u5b66\u6570\u636e\u7684\u80f0\u817a\u764c\u4f53\u6db2\u6807\u5fd7\u7269\u7cbe\u51c6\u6316\u6398\u4e0e\u673a\u7406\u7814\u7a76","funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3001460117","display_name":null,"funder_award_id":"20230201065GX","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"},{"id":"https://openalex.org/G3380686447","display_name":null,"funder_award_id":"20240101364JC","funder_id":"https://openalex.org/F4320335953","funder_display_name":"Jilin Scientific and Technological Development Program"},{"id":"https://openalex.org/G84307639","display_name":null,"funder_award_id":"No. 62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335953","display_name":"Jilin Scientific and Technological Development Program","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404260628.pdf","grobid_xml":"https://content.openalex.org/works/W4404260628.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1678356000","https://openalex.org/W1966498224","https://openalex.org/W2008056655","https://openalex.org/W2009777681","https://openalex.org/W2022867359","https://openalex.org/W2025768430","https://openalex.org/W2026099724","https://openalex.org/W2046387002","https://openalex.org/W2053081145","https://openalex.org/W2059794606","https://openalex.org/W2073415627","https://openalex.org/W2096712415","https://openalex.org/W2097486709","https://openalex.org/W2105493915","https://openalex.org/W2126938291","https://openalex.org/W2128034264","https://openalex.org/W2135314242","https://openalex.org/W2136132422","https://openalex.org/W2153624566","https://openalex.org/W2162674813","https://openalex.org/W2165759865","https://openalex.org/W2166810745","https://openalex.org/W2607500032","https://openalex.org/W2785951678","https://openalex.org/W2892880750","https://openalex.org/W2911964244","https://openalex.org/W2973140148","https://openalex.org/W3098523662","https://openalex.org/W3200356212","https://openalex.org/W4206095767","https://openalex.org/W4207038304","https://openalex.org/W4256049924","https://openalex.org/W4289860439","https://openalex.org/W4291825018","https://openalex.org/W4294376371","https://openalex.org/W4295241431","https://openalex.org/W4297183296","https://openalex.org/W4312187515","https://openalex.org/W4313706461","https://openalex.org/W4361017398","https://openalex.org/W4385288569","https://openalex.org/W4385475774","https://openalex.org/W4385520543","https://openalex.org/W4385564848","https://openalex.org/W4386248120","https://openalex.org/W4388820050","https://openalex.org/W4389117601","https://openalex.org/W4389317742","https://openalex.org/W4390075127","https://openalex.org/W4393380917","https://openalex.org/W4400390698","https://openalex.org/W4401009333","https://openalex.org/W4401485218","https://openalex.org/W4401830370","https://openalex.org/W4402036549","https://openalex.org/W4402253613","https://openalex.org/W6637404493","https://openalex.org/W6747987267","https://openalex.org/W6855197526"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W2419146053","https://openalex.org/W4388890789","https://openalex.org/W2088247287","https://openalex.org/W2932872266"],"abstract_inverted_index":{"MOTIVATION:":[0],"Research":[1],"shows":[2],"that":[3,214,232],"competing":[4],"endogenous":[5],"RNA":[6,21],"is":[7,136,203,234],"widely":[8],"involved":[9],"in":[10,13,158],"gene":[11],"regulation":[12],"cells,":[14],"and":[15,25,35,51,83,96,162,165,176,192,224,247],"identifying":[16,238],"the":[17,44,91,109,130,140,184,190,200,207,219,227],"association":[18,53,117,132,208],"between":[19,93,221],"circular":[20],"(circRNA),":[22],"microRNA":[23],"(miRNA),":[24],"cancer":[26],"can":[27,216,250],"provide":[28],"new":[29],"hope":[30],"for":[31,169],"disease":[32],"diagnosis,":[33],"treatment,":[34],"prognosis.":[36],"However,":[37],"affected":[38],"by":[39,70],"reductionism,":[40],"previous":[41],"studies":[42,229],"regarded":[43],"prediction":[45,76],"of":[46,62,105,116,123,186,194,209,236,243],"circRNA-miRNA":[47],"interaction,":[48],"circRNA-cancer":[49],"association,":[50],"miRNA-cancer":[52],"as":[54],"separate":[55],"studies.":[56],"Currently,":[57],"few":[58],"models":[59],"are":[60,181],"capable":[61,235],"simultaneously":[63],"predicting":[64],"these":[65],"three":[66],"associations.":[67,125],"RESULTS:":[68],"Inspired":[69],"holism,":[71],"we":[72,127,148],"propose":[73],"a":[74],"multi-task":[75],"method":[77,99],"based":[78,138],"on":[79,139],"neighborhood":[80],"structure":[81,151],"embedding":[82,152],"signed":[84,195],"graph":[85,196],"representation":[86],"learning,":[87],"CMCSG,":[88],"to":[89,101,119,154,205],"infer":[90],"relationship":[92,220],"circRNA,":[94,222],"miRNA,":[95,223],"cancer.":[97,225,244],"Our":[98],"aims":[100],"extract":[102,155],"feature":[103,156],"descriptors":[104],"all":[106],"molecules":[107],"from":[108,160,183],"circRNA-miRNA-cancer":[110,131],"regulatory":[111,145],"network":[112,133],"using":[113],"known":[114],"types":[115,122,242],"information":[118],"predict":[120,206,218],"unknown":[121],"molecular":[124,179],"Specifically,":[126],"first":[128],"constructed":[129,137],"(CMCN),":[134],"which":[135],"experimentally":[141],"verified":[142],"biomedical":[143],"entity":[144],"network;":[146,198],"next,":[147],"combine":[149],"topological":[150],"methods":[153],"representations":[157],"CMCN":[159],"local":[161],"global":[163],"perspectives,":[164],"use":[166],"denoising":[167],"autoencoder":[168],"enhancement;":[170],"then,":[171],"combined":[172],"with":[173],"balance":[174],"theory":[175],"state":[177],"theory,":[178],"features":[180],"extracted":[182],"point":[185],"social":[187],"relations":[188],"through":[189],"propagation":[191],"aggregation":[193],"attention":[197],"finally,":[199],"GBDT":[201],"classifier":[202],"used":[204],"molecules.":[210],"The":[211,245],"results":[212],"show":[213],"CMCSG":[215,233],"effectively":[217],"Additionally,":[226],"case":[228],"also":[230],"demonstrate":[231],"accurately":[237],"biomarkers":[239],"across":[240],"various":[241],"data":[246],"source":[248],"code":[249],"be":[251],"found":[252],"at":[253],"https://github.com/1axin/CMCSG.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
