{"id":"https://openalex.org/W4404122385","doi":"https://doi.org/10.1093/bib/bbae571","title":"SpaDiT: diffusion transformer for spatial gene expression prediction using scRNA-seq","display_name":"SpaDiT: diffusion transformer for spatial gene expression prediction using scRNA-seq","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404122385","doi":"https://doi.org/10.1093/bib/bbae571","pmid":"https://pubmed.ncbi.nlm.nih.gov/39508444"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae571","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae571/60471863/bbae571.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae571/60471863/bbae571.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Xiaoyu Li","orcid":"https://orcid.org/0009-0003-0829-0663"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoyu Li","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University , 650500, Kunming, Yunnan ,"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University , 650500, Kunming, Yunnan ,","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103650117","display_name":"Fangfang Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210160657","display_name":"Yunnan Open University","ror":"https://ror.org/04egk7864","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210160657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fangfang Zhu","raw_affiliation_strings":["School of Health and Nursing, Yunnan Open University , 650599, Kunming ,"],"affiliations":[{"raw_affiliation_string":"School of Health and Nursing, Yunnan Open University , 650599, Kunming ,","institution_ids":["https://openalex.org/I4210160657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083513047","display_name":"Wenwen Min","orcid":"https://orcid.org/0000-0002-2558-2911"},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenwen Min","raw_affiliation_strings":["School of Information Science and Engineering, Yunnan University , 650500, Kunming, Yunnan ,"],"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Yunnan University , 650500, Kunming, Yunnan ,","institution_ids":["https://openalex.org/I189210763"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I189210763"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.3405,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.9750059,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9646999835968018,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9517999887466431,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5116017460823059},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.47964149713516235},{"id":"https://openalex.org/keywords/diffusion","display_name":"Diffusion","score":0.47524070739746094},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.42613011598587036},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41782814264297485},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4106858968734741},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3696783185005188},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21629592776298523},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13773873448371887},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1186462938785553},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.0853787362575531},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.053957074880599976},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.053149253129959106}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5116017460823059},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.47964149713516235},{"id":"https://openalex.org/C69357855","wikidata":"https://www.wikidata.org/wiki/Q163214","display_name":"Diffusion","level":2,"score":0.47524070739746094},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.42613011598587036},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41782814264297485},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4106858968734741},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3696783185005188},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21629592776298523},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13773873448371887},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1186462938785553},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0853787362575531},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.053957074880599976},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.053149253129959106},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae571","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae571/60471863/bbae571.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39508444","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39508444","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11541600","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11541600","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11541600/pdf/bbae571.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae571","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae571/60471863/bbae571.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G630115661","display_name":null,"funder_award_id":"62262069","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404122385.pdf","grobid_xml":"https://content.openalex.org/works/W4404122385.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W2171501288","https://openalex.org/W2806524706","https://openalex.org/W2809368942","https://openalex.org/W2894687190","https://openalex.org/W2899224111","https://openalex.org/W2901677030","https://openalex.org/W2953036966","https://openalex.org/W2995703197","https://openalex.org/W3007402690","https://openalex.org/W3022836409","https://openalex.org/W3036167779","https://openalex.org/W3087138957","https://openalex.org/W3110998212","https://openalex.org/W3112563877","https://openalex.org/W3120427588","https://openalex.org/W3122762933","https://openalex.org/W3161226217","https://openalex.org/W3171692328","https://openalex.org/W3182503854","https://openalex.org/W3190202966","https://openalex.org/W3190759848","https://openalex.org/W3198511950","https://openalex.org/W3208940117","https://openalex.org/W3214679604","https://openalex.org/W4220915786","https://openalex.org/W4221065117","https://openalex.org/W4229033508","https://openalex.org/W4300862018","https://openalex.org/W4306353205","https://openalex.org/W4307291223","https://openalex.org/W4387580076","https://openalex.org/W4389135772","https://openalex.org/W4393023418","https://openalex.org/W4394718179","https://openalex.org/W4394870153","https://openalex.org/W4400067375","https://openalex.org/W4400519842","https://openalex.org/W4400519876","https://openalex.org/W6679045638","https://openalex.org/W6779823529","https://openalex.org/W6847302828","https://openalex.org/W6849864990","https://openalex.org/W6863445405"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W3129895999","https://openalex.org/W2374091470","https://openalex.org/W4388218547","https://openalex.org/W2379703849","https://openalex.org/W2788230883"],"abstract_inverted_index":{"The":[0],"rapid":[1],"development":[2],"of":[3,17,40,44,55,113,123,131,140],"spatially":[4],"resolved":[5],"transcriptomics":[6,48,133],"(SRT)":[7],"technologies":[8],"has":[9],"provided":[10],"unprecedented":[11],"opportunities":[12],"for":[13,74],"exploring":[14],"the":[15,37,65,110,121,138],"structure":[16],"specific":[18],"organs":[19],"or":[20],"tissues.":[21],"However,":[22],"these":[23],"techniques":[24],"(such":[25],"as":[26,88,102],"image-based":[27,150],"SRT)":[28],"can":[29,34],"achieve":[30],"single-cell":[31],"resolution,":[32],"but":[33],"only":[35],"capture":[36],"expression":[38,79,115,126],"levels":[39],"tens":[41],"to":[42,105],"hundreds":[43],"genes.":[45],"Such":[46],"spatial":[47,75,124,132],"(ST)":[49],"data,":[50],"carrying":[51],"a":[52,70,90,129],"large":[53],"number":[54],"undetected":[56],"genes,":[57],"have":[58,136],"limited":[59],"its":[60],"application":[61],"value.":[62],"To":[63],"address":[64],"challenge,":[66],"we":[67],"develop":[68],"SpaDiT,":[69],"deep":[71],"learning":[72],"framework":[73],"reconstruction":[76],"and":[77,93,99,149,162,179,190],"gene":[78,114,125],"prediction":[80,112],"using":[81],"scRNA-seq":[82,86,100],"data.":[83,118,152],"SpaDiT":[84,119,141,155],"employs":[85],"data":[87,101],"an":[89,169],"priori":[91],"condition":[92],"utilizes":[94],"shared":[95],"genes":[96],"between":[97],"ST":[98,117,151],"latent":[103],"representations":[104],"construct":[106],"inputs,":[107],"thereby":[108],"facilitating":[109],"accurate":[111],"in":[116,172,183],"enhances":[120],"accuracy":[122],"predictions":[127],"over":[128],"variety":[130],"datasets.":[134],"We":[135,153],"demonstrated":[137],"effectiveness":[139],"by":[142],"conducting":[143],"extensive":[144],"experiments":[145],"on":[146],"both":[147],"seq-based":[148],"compared":[154],"with":[156],"eight":[157],"highly":[158],"effective":[159],"baseline":[160],"methods":[161],"found":[163],"that":[164],"our":[165],"proposed":[166],"method":[167],"achieved":[168],"8%-12%":[170],"improvement":[171],"performance":[173],"across":[174],"multiple":[175],"metrics.":[176],"Source":[177],"code":[178],"all":[180],"datasets":[181],"used":[182],"this":[184],"paper":[185],"are":[186],"available":[187],"at":[188],"https://github.com/wenwenmin/SpaDiT":[189],"https://zenodo.org/records/12792074.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":8}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}
