{"id":"https://openalex.org/W4403972624","doi":"https://doi.org/10.1093/bib/bbae558","title":"Graph contrastive learning as a versatile foundation for advanced scRNA-seq data analysis","display_name":"Graph contrastive learning as a versatile foundation for advanced scRNA-seq data analysis","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403972624","doi":"https://doi.org/10.1093/bib/bbae558","pmid":"https://pubmed.ncbi.nlm.nih.gov/39487083"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae558","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae558/60290082/bbae558.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae558/60290082/bbae558.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067376850","display_name":"Zhenhao Zhang","orcid":"https://orcid.org/0000-0002-3909-3625"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenhao Zhang","raw_affiliation_strings":["College of Information Engineering, Northwest A&F University , Yangling, 712100 Shaanxi ,","College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]},{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100602640","display_name":"Yuxi Liu","orcid":"https://orcid.org/0000-0003-1265-7926"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuxi Liu","raw_affiliation_strings":["College of Medicine, University of Florida , Gainesville, FL 32610 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Florida , Gainesville, FL 32610 ,","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111183702","display_name":"Meichen Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meichen Xiao","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065145414","display_name":"Kun Wang","orcid":"https://orcid.org/0000-0001-5910-1568"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Wang","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037823270","display_name":"Yu Huang","orcid":"https://orcid.org/0000-0001-7373-4716"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Huang","raw_affiliation_strings":["College of Medicine, University of Florida , Gainesville, FL 32610 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Florida , Gainesville, FL 32610 ,","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["College of Medicine, University of Florida , Gainesville, FL 32610 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Florida , Gainesville, FL 32610 ,","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016984773","display_name":"Ruolin Yang","orcid":"https://orcid.org/0000-0001-6241-6317"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruolin Yang","raw_affiliation_strings":["College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063409460","display_name":"Fuyi Li","orcid":"https://orcid.org/0000-0001-5216-3213"},"institutions":[{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fuyi Li","raw_affiliation_strings":["College of Information Engineering, Northwest A&F University , Yangling, 712100 Shaanxi ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, Northwest A&F University , Yangling, 712100 Shaanxi ,","institution_ids":["https://openalex.org/I89652312"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016984773","https://openalex.org/A5063409460"],"corresponding_institution_ids":["https://openalex.org/I89652312"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.7499,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.91435823,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.7162461280822754},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6809325218200684},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.569389283657074},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49247798323631287},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44610562920570374},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1937287151813507},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.06823402643203735},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.066010981798172}],"concepts":[{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.7162461280822754},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6809325218200684},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.569389283657074},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49247798323631287},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44610562920570374},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1937287151813507},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.06823402643203735},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.066010981798172}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae558","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae558/60290082/bbae558.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39487083","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39487083","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11530284","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11530284","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11530284/pdf/bbae558.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae558","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae558","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae558/60290082/bbae558.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5099999904632568,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4194776581","display_name":null,"funder_award_id":"2022YFF1000100","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6284236330","display_name":null,"funder_award_id":"2452024407","funder_id":"https://openalex.org/F4320334997","funder_display_name":"Chinese Universities Scientific Fund"},{"id":"https://openalex.org/G7070826438","display_name":null,"funder_award_id":"62202388","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7777819896","display_name":null,"funder_award_id":"-2022","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334997","display_name":"Chinese Universities Scientific Fund","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403972624.pdf","grobid_xml":"https://content.openalex.org/works/W4403972624.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W1631320694","https://openalex.org/W1979283544","https://openalex.org/W2007439698","https://openalex.org/W2510746232","https://openalex.org/W2523620612","https://openalex.org/W2626990934","https://openalex.org/W2788348358","https://openalex.org/W2792693509","https://openalex.org/W2800392236","https://openalex.org/W2805619986","https://openalex.org/W2885673883","https://openalex.org/W2889326414","https://openalex.org/W2897249806","https://openalex.org/W2937917790","https://openalex.org/W2949067670","https://openalex.org/W2950372712","https://openalex.org/W2951217100","https://openalex.org/W2951381561","https://openalex.org/W2951506174","https://openalex.org/W2952303649","https://openalex.org/W2953251392","https://openalex.org/W2964015378","https://openalex.org/W3000756465","https://openalex.org/W3009609875","https://openalex.org/W3021272327","https://openalex.org/W3106188259","https://openalex.org/W3113251307","https://openalex.org/W3137285774","https://openalex.org/W3138479716","https://openalex.org/W3163972593","https://openalex.org/W3216323060","https://openalex.org/W4213136259","https://openalex.org/W4221150228","https://openalex.org/W4221166060","https://openalex.org/W4225579877","https://openalex.org/W4235169531","https://openalex.org/W4280598116","https://openalex.org/W4288384137","https://openalex.org/W4297243391","https://openalex.org/W4315621823","https://openalex.org/W4321748573","https://openalex.org/W4365143687","https://openalex.org/W4367312557","https://openalex.org/W4378348563","https://openalex.org/W4379599555","https://openalex.org/W4380368554","https://openalex.org/W4380576938","https://openalex.org/W4385245566","https://openalex.org/W4385381606","https://openalex.org/W4387068120","https://openalex.org/W4392173777","https://openalex.org/W4392899363","https://openalex.org/W4392904712","https://openalex.org/W4399360452","https://openalex.org/W4403198130","https://openalex.org/W6685380521","https://openalex.org/W6739901393","https://openalex.org/W6776453328","https://openalex.org/W6787157338","https://openalex.org/W6810599777","https://openalex.org/W6855888871","https://openalex.org/W6859356341","https://openalex.org/W6872199534"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2381393187","https://openalex.org/W2332779545","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W2358060160","https://openalex.org/W3204019825"],"abstract_inverted_index":{"Single-cell":[0],"RNA":[1],"sequencing":[2],"(scRNA-seq)":[3],"offers":[4],"unprecedented":[5],"insights":[6],"into":[7,89],"transcriptome-wide":[8],"gene":[9],"expression":[10,35],"at":[11,248],"the":[12,22,29,83,131,146,166,181,184,192,208,215,220],"single-cell":[13],"level.":[14],"Cell":[15],"clustering":[16,39,76,88,97,188,199],"has":[17,59,81],"been":[18,99],"long":[19],"established":[20],"in":[21,95,219],"analysis":[23,190,206],"of":[24,31,86,139,148,168,183,195,210,217,243],"scRNA-seq":[25,45,78,178],"data":[26,46,79],"to":[27,105,164],"identify":[28],"groups":[30],"cells":[32],"with":[33,214],"similar":[34],"profiles.":[36],"However,":[37],"cell":[38,75,87,96,153,169,238],"is":[40,245],"technically":[41],"challenging,":[42],"as":[43,65,229],"raw":[44],"have":[47,98],"various":[48],"analytical":[49],"issues,":[50],"including":[51,197],"high":[52],"dimensionality":[53],"and":[54,70,80,161,176,204],"dropout":[55],"values.":[56],"Existing":[57],"research":[58],"developed":[60],"deep":[61],"learning":[62,68,85,113,134,163,222],"models,":[63,73],"such":[64],"graph":[66,132,140,159],"machine":[67],"models":[69],"contrastive":[71,133,162],"learning-based":[72],"for":[74,112,117,136,152,233,237],"using":[77],"summarized":[82],"unsupervised":[84],"a":[90,107,126,230],"human-interpretable":[91],"format.":[92],"While":[93],"advances":[94],"profound,":[100],"we":[101,123],"are":[102],"no":[103],"closer":[104],"finding":[106],"simple":[108],"yet":[109],"effective":[110],"framework":[111,128,144,232],"high-quality":[114,149],"representations":[115,150],"necessary":[116],"robust":[118,231],"clustering.":[119,154,170,239],"In":[120],"this":[121],"study,":[122],"propose":[124],"scSimGCL,":[125,196],"novel":[127],"based":[129],"on":[130,174],"paradigm":[135],"self-supervised":[137,221],"pretraining":[138],"neural":[141],"networks.":[142],"This":[143],"facilitates":[145],"generation":[147],"crucial":[151],"Our":[155],"scSimGCL":[156,226,244],"incorporates":[157],"cell-cell":[158],"structure":[160],"enhance":[165],"performance":[167],"Extensive":[171],"experimental":[172],"results":[173],"simulated":[175],"real":[177],"datasets":[179],"suggest":[180,207],"superiority":[182],"proposed":[185,225],"scSimGCL.":[186],"Moreover,":[187],"assignment":[189],"confirms":[191],"general":[193],"applicability":[194],"state-of-the-art":[198],"algorithms.":[200],"Further,":[201],"ablation":[202],"study":[203],"hyperparameter":[205],"efficacy":[209],"our":[211],"network":[212],"architecture":[213],"robustness":[216],"decisions":[218],"setting.":[223],"The":[224,240],"can":[227],"serve":[228],"practitioners":[234],"developing":[235],"tools":[236],"source":[241],"code":[242],"publicly":[246],"available":[247],"https://github.com/zhangzh1328/scSimGCL.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
