{"id":"https://openalex.org/W4404091128","doi":"https://doi.org/10.1093/bib/bbae553","title":"STAVER: a standardized benchmark dataset-based algorithm for effective variation reduction in large-scale DIA-MS data","display_name":"STAVER: a standardized benchmark dataset-based algorithm for effective variation reduction in large-scale DIA-MS data","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4404091128","doi":"https://doi.org/10.1093/bib/bbae553","pmid":"https://pubmed.ncbi.nlm.nih.gov/39504480"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae553","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae553/60250328/bbae553.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae553/60250328/bbae553.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001913576","display_name":"Peng Ran","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Ran","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101572877","display_name":"Yunzhi Wang","orcid":"https://orcid.org/0000-0002-1086-8896"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunzhi Wang","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049509196","display_name":"Kai Li","orcid":"https://orcid.org/0000-0001-6544-6052"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Li","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101518935","display_name":"Shiman He","orcid":"https://orcid.org/0009-0002-3652-1636"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiman He","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039059466","display_name":"Subei Tan","orcid":"https://orcid.org/0000-0001-9869-6074"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Subei Tan","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112896630","display_name":"Jiacheng Lv","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiacheng Lv","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101815056","display_name":"Jiajun Zhu","orcid":"https://orcid.org/0000-0001-6488-6419"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajun Zhu","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091073809","display_name":"Shaoshuai Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaoshuai Tang","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024734302","display_name":"Jinwen Feng","orcid":"https://orcid.org/0000-0003-1683-4280"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinwen Feng","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047055896","display_name":"Zhaoyu Qin","orcid":"https://orcid.org/0000-0003-4437-0268"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyu Qin","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008110283","display_name":"Yan Li","orcid":"https://orcid.org/0000-0001-9041-7675"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023325607","display_name":"Lin Huang","orcid":"https://orcid.org/0000-0002-3753-7894"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Huang","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011964268","display_name":"Yanan Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanan Yin","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110297846","display_name":"Lingli Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingli Zhu","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101819779","display_name":"Wenjun Yang","orcid":"https://orcid.org/0000-0002-6820-4822"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I2801518579","display_name":"XinHua Hospital","ror":"https://ror.org/04dzvks42","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2801518579"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjun Yang","raw_affiliation_strings":["Department of Pediatric Orthopedics, Xinhua Hospital affiliated to Shanghai Jiao Tong University School of Medicine , No. 1665, Kongjiang Road, Yangpu District, Shanghai 200092,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatric Orthopedics, Xinhua Hospital affiliated to Shanghai Jiao Tong University School of Medicine , No. 1665, Kongjiang Road, Yangpu District, Shanghai 200092,","institution_ids":["https://openalex.org/I183067930","https://openalex.org/I2801518579"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100663432","display_name":"Chen Ding","orcid":"https://orcid.org/0000-0001-8673-3464"},"institutions":[{"id":"https://openalex.org/I154093214","display_name":"Xinjiang Medical University","ror":"https://ror.org/01p455v08","country_code":"CN","type":"education","lineage":["https://openalex.org/I154093214"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210156766","display_name":"Shanghai Cell Therapy Research Institute","ror":"https://ror.org/044ef5h76","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210156766"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Ding","raw_affiliation_strings":["Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","Departments of Cancer Research Institute, Affiliated Cancer Hospital of Xinjiang Medical University Xinjiang Key Laboratory of Translational Biomedical Engineering , Urumqi 830000,","Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R"],"raw_orcid":"https://orcid.org/0000-0001-8673-3464","affiliations":[{"raw_affiliation_string":"Center for Cell and Gene Therapy , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I4210156766"]},{"raw_affiliation_string":"Departments of Cancer Research Institute, Affiliated Cancer Hospital of Xinjiang Medical University Xinjiang Key Laboratory of Translational Biomedical Engineering , Urumqi 830000,","institution_ids":["https://openalex.org/I154093214"]},{"raw_affiliation_string":"Fudan University , Clinical Research Center for Cell-based Immunotherapy, Shanghai Pudong Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute, , E301, School of Life Sciences, No. 2005, Songhu Road, Yangpu District, Shanghai 200438, P.R","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.6858,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.63827711,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7255196571350098},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6495640277862549},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6185545325279236},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5235323905944824},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4828127324581146},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4629201889038086},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.4551520347595215},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.42171788215637207},{"id":"https://openalex.org/keywords/quantitative-proteomics","display_name":"Quantitative proteomics","score":0.41257384419441223},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.299828439950943},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25572317838668823},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.08038124442100525},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07062399387359619}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7255196571350098},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6495640277862549},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6185545325279236},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5235323905944824},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4828127324581146},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4629201889038086},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.4551520347595215},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.42171788215637207},{"id":"https://openalex.org/C80311884","wikidata":"https://www.wikidata.org/wiki/Q7268939","display_name":"Quantitative proteomics","level":4,"score":0.41257384419441223},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.299828439950943},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25572317838668823},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.08038124442100525},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07062399387359619},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019985","descriptor_name":"Benchmarking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae553","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae553/60250328/bbae553.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39504480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39504480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11540132","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11540132","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11540132/pdf/bbae553.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae553","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae553/60250328/bbae553.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1683960622","display_name":null,"funder_award_id":"31972933","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2322800720","display_name":null,"funder_award_id":"2022YFA1303200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2955172101","display_name":null,"funder_award_id":"32201212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5105551473","display_name":null,"funder_award_id":"82272166","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5110390867","display_name":null,"funder_award_id":"18ZR1446300","funder_id":"https://openalex.org/F4320309612","funder_display_name":"Natural Science Foundation of Shanghai"},{"id":"https://openalex.org/G5213046062","display_name":null,"funder_award_id":"22XD1420100","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5551058621","display_name":null,"funder_award_id":"32330062","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7433111676","display_name":null,"funder_award_id":"32201212","funder_id":"https://openalex.org/F4320331088","funder_display_name":"Natural Science Foundation for Young Scientists of Shanxi Province"},{"id":"https://openalex.org/G8042646848","display_name":null,"funder_award_id":"2022YFA1303201","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320309612","display_name":"Natural Science Foundation of Shanghai","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"},{"id":"https://openalex.org/F4320331088","display_name":"Natural Science Foundation for Young Scientists of Shanxi Province","ror":null},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404091128.pdf","grobid_xml":"https://content.openalex.org/works/W4404091128.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1836273607","https://openalex.org/W1964595219","https://openalex.org/W1967220865","https://openalex.org/W1975558168","https://openalex.org/W2018126724","https://openalex.org/W2038268416","https://openalex.org/W2045117578","https://openalex.org/W2062859898","https://openalex.org/W2097105468","https://openalex.org/W2104764521","https://openalex.org/W2146512944","https://openalex.org/W2161811833","https://openalex.org/W2296877449","https://openalex.org/W2754554672","https://openalex.org/W2887294942","https://openalex.org/W2910730299","https://openalex.org/W2947763854","https://openalex.org/W2991106430","https://openalex.org/W3031410640","https://openalex.org/W3033072986","https://openalex.org/W3045740289","https://openalex.org/W3048977054","https://openalex.org/W3085420778","https://openalex.org/W3092379910","https://openalex.org/W3093284294","https://openalex.org/W3093407181","https://openalex.org/W3095186004","https://openalex.org/W3108232640","https://openalex.org/W3159915352","https://openalex.org/W3171623624","https://openalex.org/W3182801282","https://openalex.org/W3196242974","https://openalex.org/W4210706440","https://openalex.org/W4214929667","https://openalex.org/W4220961963","https://openalex.org/W4229334913","https://openalex.org/W4254495319","https://openalex.org/W4281632195","https://openalex.org/W4284897468","https://openalex.org/W4285404371","https://openalex.org/W4293237983","https://openalex.org/W4297369411","https://openalex.org/W4312129827","https://openalex.org/W4312197729","https://openalex.org/W4313577308","https://openalex.org/W4317884504","https://openalex.org/W4384938812","https://openalex.org/W4385796110","https://openalex.org/W4391428615"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"Mass":[0],"spectrometry":[1],"(MS)-based":[2],"proteomics":[3],"has":[4],"become":[5],"instrumental":[6],"in":[7,33,49,72,80,90,148],"comprehensively":[8],"investigating":[9],"complex":[10],"biological":[11],"systems.":[12],"Data-independent":[13],"acquisition":[14],"(DIA)-MS,":[15],"utilizing":[16],"hybrid":[17,91],"spectral":[18,92],"library":[19,93],"search":[20],"strategies,":[21],"allows":[22],"for":[23,123],"the":[24,125,142],"simultaneous":[25],"quantification":[26,38,87],"of":[27,29,113,127,146],"thousands":[28],"proteins,":[30],"showing":[31],"promise":[32],"enhancing":[34,124],"protein":[35,51,86,114],"identification":[36],"and":[37,100,111,120,134,144],"precision.":[39],"However,":[40],"low-quality":[41],"profiles":[42],"can":[43],"considerably":[44],"undermine":[45],"quantitative":[46],"precision,":[47,88],"resulting":[48],"inaccurate":[50],"quantification.":[52,115],"To":[53],"tackle":[54],"this":[55],"challenge,":[56],"we":[57,96],"introduced":[58],"STAVER,":[59],"a":[60],"novel":[61],"algorithm":[62],"that":[63],"leverages":[64],"standardized":[65],"benchmark":[66],"datasets":[67],"to":[68],"reduce":[69],"non-biological":[70],"variation":[71],"large-scale":[73,104,128],"DIA-MS":[74],"analyses.":[75,137],"By":[76],"eliminating":[77],"unwanted":[78],"noise":[79],"MS":[81],"signals,":[82],"STAVER":[83,116],"significantly":[84,108,140],"improved":[85],"especially":[89],"searches.":[94],"Moreover,":[95],"validated":[97],"STAVER's":[98],"robustness":[99],"applicability":[101],"across":[102],"multiple":[103],"DIA":[105,129],"datasets,":[106],"demonstrating":[107],"enhanced":[109],"precision":[110],"reproducibility":[112],"offers":[117],"an":[118],"innovative":[119],"effective":[121],"approach":[122],"quality":[126],"proteomic":[130],"data,":[131],"facilitating":[132],"cross-platform":[133],"cross-laboratory":[135],"comparative":[136],"This":[138],"advancement":[139],"enhances":[141],"consistency":[143],"reliability":[145],"findings":[147],"clinical":[149],"research.":[150],"The":[151],"complete":[152],"package":[153],"is":[154],"available":[155],"at":[156],"https://github.com/Ran485/STAVER.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
