{"id":"https://openalex.org/W4403809881","doi":"https://doi.org/10.1093/bib/bbae546","title":"Multi-view learning framework for predicting unknown types of cancer markers via directed graph neural networks fitting regulatory networks","display_name":"Multi-view learning framework for predicting unknown types of cancer markers via directed graph neural networks fitting regulatory networks","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403809881","doi":"https://doi.org/10.1093/bib/bbae546","pmid":"https://pubmed.ncbi.nlm.nih.gov/39470307"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae546","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae546","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae546","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069085710","display_name":"Xinfei Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xin-Fei Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":"https://orcid.org/0000-0003-0554-2936","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101463922","display_name":"Lan Huang","orcid":"https://orcid.org/0000-0003-3233-3777"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Lan Huang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322699","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-4751-0708"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":"https://orcid.org/0000-0002-4751-0708","affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007914848","display_name":"Renchu Guan","orcid":"https://orcid.org/0000-0002-7162-7826"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ren-Chu Guan","raw_affiliation_strings":["Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, Jilin University, No. 2699, Qianjin Street, Changchun, 130012,"],"raw_orcid":"https://orcid.org/0000-0002-7162-7826","affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, Jilin University, No. 2699, Qianjin Street, Changchun, 130012,","institution_ids":["https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I2802805919","display_name":"Science North","ror":"https://ror.org/028k36c88","country_code":"CA","type":"archive","lineage":["https://openalex.org/I2802805919"]}],"countries":["CA","CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University , Youyi West Road, Xi\u2019an, 710072 ,"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University , Youyi West Road, Xi\u2019an, 710072 ,","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I2802805919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057845577","display_name":"Nan Sheng","orcid":"https://orcid.org/0000-0002-0306-9009"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Nan Sheng","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014815375","display_name":"Xuping Xie","orcid":"https://orcid.org/0000-0003-0918-016X"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Xu-Ping Xie","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024295908","display_name":"Wenju Hou","orcid":"https://orcid.org/0000-0001-9247-8324"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210108141","display_name":"Ministry of Education","ror":"https://ror.org/01hw7wf62","country_code":"IR","type":"government","lineage":["https://openalex.org/I4210108141"]}],"countries":["CN","IR"],"is_corresponding":false,"raw_author_name":"Wen-Ju Hou","raw_affiliation_strings":["Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jilin University , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education , College of Computer Science and Technology, , No. 2699, Qianjin Street, Changchun, 130012 ,","institution_ids":["https://openalex.org/I4210108141"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.5927,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.90881431,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6183531284332275},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.6132055521011353},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49837803840637207},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.49779796600341797},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48048678040504456},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47925281524658203},{"id":"https://openalex.org/keywords/cancer-biomarkers","display_name":"Cancer biomarkers","score":0.4575771987438202},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4537825584411621},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4361177384853363},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3861547112464905},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20665568113327026},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.17210131883621216},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12887170910835266}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6183531284332275},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.6132055521011353},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49837803840637207},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.49779796600341797},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48048678040504456},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47925281524658203},{"id":"https://openalex.org/C2777002142","wikidata":"https://www.wikidata.org/wiki/Q5031432","display_name":"Cancer biomarkers","level":3,"score":0.4575771987438202},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4537825584411621},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4361177384853363},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3861547112464905},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20665568113327026},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.17210131883621216},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12887170910835266},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae546","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae546","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39470307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39470307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11514060","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11514060","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11514060/pdf/bbae546.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae546","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae546","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2241915452","display_name":"\u878d\u5408\u591a\u7ec4\u5b66\u6570\u636e\u7684\u80f0\u817a\u764c\u4f53\u6db2\u6807\u5fd7\u7269\u7cbe\u51c6\u6316\u6398\u4e0e\u673a\u7406\u7814\u7a76","funder_award_id":"62072212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322174","display_name":"People's Government of Jilin Province","ror":"https://ror.org/02fzqav45"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1573602524","https://openalex.org/W2021135205","https://openalex.org/W2062029454","https://openalex.org/W2110957978","https://openalex.org/W2158485828","https://openalex.org/W2166810745","https://openalex.org/W2964015378","https://openalex.org/W2990063070","https://openalex.org/W3006242222","https://openalex.org/W3011122062","https://openalex.org/W3027711990","https://openalex.org/W3041236926","https://openalex.org/W3098523662","https://openalex.org/W3116906693","https://openalex.org/W3198168376","https://openalex.org/W3205633532","https://openalex.org/W4200043367","https://openalex.org/W4200110750","https://openalex.org/W4207038304","https://openalex.org/W4294376371","https://openalex.org/W4295241431","https://openalex.org/W4295814154","https://openalex.org/W4296394114","https://openalex.org/W4296580708","https://openalex.org/W4297183296","https://openalex.org/W4302013308","https://openalex.org/W4313406530","https://openalex.org/W4361017398","https://openalex.org/W4362594096","https://openalex.org/W4375955768","https://openalex.org/W4385288569","https://openalex.org/W4385475774","https://openalex.org/W4385564848","https://openalex.org/W4387516871","https://openalex.org/W4388698606","https://openalex.org/W4388820050","https://openalex.org/W4388870164","https://openalex.org/W4390706181","https://openalex.org/W4393158863","https://openalex.org/W4401009333","https://openalex.org/W6726873649","https://openalex.org/W6855197526","https://openalex.org/W6855396924"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431","https://openalex.org/W99488802"],"abstract_inverted_index":{"The":[0,182],"discovery":[1,77],"of":[2,32,78,81,93,174,190,198,207,210],"diagnostic":[3],"and":[4,17,54,96,138,160,177,186,201,229],"therapeutic":[5],"biomarkers":[6,193,211],"for":[7,28,129,212,232],"complex":[8,33],"diseases,":[9],"especially":[10],"cancer,":[11],"has":[12],"always":[13],"been":[14],"a":[15,117,170,226],"central":[16],"long-term":[18],"challenge":[19],"in":[20,106,221],"molecular":[21,47],"association":[22,71],"prediction":[23,43,67,109],"research,":[24],"offering":[25],"promising":[26],"avenues":[27],"advancing":[29],"the":[30,76,90,152],"understanding":[31],"diseases.":[34],"To":[35,111],"this":[36],"end,":[37],"researchers":[38],"have":[39,58],"developed":[40],"various":[41,162],"network-based":[42],"techniques":[44],"targeting":[45],"specific":[46,98],"associations.":[48,82],"However,":[49],"limitations":[50],"imposed":[51],"by":[52],"reductionism":[53],"network":[55,86],"representation":[56],"learning":[57,119],"led":[59],"existing":[60],"studies":[61],"to":[62,88,150],"narrowly":[63],"focus":[64],"on":[65,123],"high":[66],"efficiency":[68],"within":[69],"single":[70],"type,":[72],"thereby":[73],"glossing":[74],"over":[75],"unknown":[79,131],"types":[80,189,209],"Additionally,":[83],"effectively":[84,136],"utilizing":[85],"structure":[87],"fit":[89],"interaction":[91,163],"properties":[92],"regulatory":[94,154],"networks":[95,127],"combining":[97],"case":[99],"biomarker":[100,108,223,235],"validations":[101],"remains":[102],"an":[103],"unresolved":[104],"issue":[105],"cancer":[107,133,192,222],"methods.":[110],"overcome":[112],"these":[113],"limitations,":[114],"we":[115],"propose":[116],"multi-view":[118,143],"framework,":[120],"CeRVE,":[121],"based":[122],"directed":[124],"graph":[125],"neural":[126],"(DGNN)":[128],"predicting":[130],"type":[132],"biomarkers.":[134],"CeRVE":[135,147,168,217],"extracts":[137],"integrates":[139],"subgraph":[140],"information":[141],"through":[142,181,194],"feature":[144],"learning.":[145],"Subsequently,":[146],"utilizes":[148],"DGNN":[149],"simulate":[151],"entire":[153],"network,":[155],"propagating":[156],"node":[157],"attribute":[158],"features":[159],"extracting":[161],"relationships":[164],"between":[165],"molecules.":[166],"Furthermore,":[167],"constructed":[169],"comparative":[171],"analysis":[172,197],"matrix":[173],"three":[175],"cancers":[176,214],"adjacent":[178],"normal":[179],"tissues":[180],"Cancer":[183],"Genome":[184],"Atlas":[185],"identified":[187],"multiple":[188,208],"potential":[191],"differential":[195],"expression":[196],"mRNA,":[199],"microRNA,":[200],"long":[202],"noncoding":[203],"RNA.":[204],"Computational":[205],"testing":[206],"72":[213],"demonstrates":[215],"that":[216],"exhibits":[218],"superior":[219],"performance":[220],"prediction,":[224],"providing":[225],"powerful":[227],"tool":[228],"insightful":[230],"approach":[231],"AI-assisted":[233],"disease":[234],"discovery.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
