{"id":"https://openalex.org/W4403625173","doi":"https://doi.org/10.1093/bib/bbae537","title":"Predictability of antigen binding based on short motifs in the antibody CDRH3","display_name":"Predictability of antigen binding based on short motifs in the antibody CDRH3","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403625173","doi":"https://doi.org/10.1093/bib/bbae537","pmid":"https://pubmed.ncbi.nlm.nih.gov/39438077"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae537","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae537","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088612281","display_name":"Lonneke Scheffer","orcid":"https://orcid.org/0000-0001-8900-075X"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Lonneke Scheffer","raw_affiliation_strings":["Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114354058","display_name":"Eric Emanuel Reber","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eric Emanuel Reber","raw_affiliation_strings":["Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071965180","display_name":"Brij Bhushan Mehta","orcid":"https://orcid.org/0000-0002-8501-7076"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Brij Bhushan Mehta","raw_affiliation_strings":["Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037853098","display_name":"Milena Pavlovi\u0107","orcid":"https://orcid.org/0000-0002-2484-3868"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Milena Pavlovi\u0107","raw_affiliation_strings":["Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069976250","display_name":"Maria Chernigovskaya","orcid":"https://orcid.org/0000-0002-1507-4171"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Maria Chernigovskaya","raw_affiliation_strings":["Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027513441","display_name":"Eve Richardson","orcid":"https://orcid.org/0000-0002-5499-6283"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eve Richardson","raw_affiliation_strings":["La Jolla Institute for Immunology , 9420 Athena Cir, La Jolla, CA ,"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Immunology , 9420 Athena Cir, La Jolla, CA ,","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017929614","display_name":"Rahmad Akbar","orcid":"https://orcid.org/0000-0002-6692-0876"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Rahmad Akbar","raw_affiliation_strings":["Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018839831","display_name":"Fridtjof Lund\u2010Johansen","orcid":"https://orcid.org/0000-0002-2445-1258"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Fridtjof Lund-Johansen","raw_affiliation_strings":["Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089158926","display_name":"Victor Greiff","orcid":"https://orcid.org/0000-0003-2622-5032"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Victor Greiff","raw_affiliation_strings":["Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, University of Oslo , Sognsvannsveien 20, Rikshospitalet, 0372 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011273156","display_name":"Ingrid Hob\u00e6k Haff","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ingrid Hob\u00e6k Haff","raw_affiliation_strings":["Department of Mathematics, University of Oslo , Niels Henrik Abels hus, Moltke Moes vei 35, 0851 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of Oslo , Niels Henrik Abels hus, Moltke Moes vei 35, 0851 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054500587","display_name":"Geir Kjetil Sandve","orcid":"https://orcid.org/0000-0002-4959-1409"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Geir Kjetil Sandve","raw_affiliation_strings":["Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo , Gaustadall\u00e9en 23B, 0373 Oslo ,","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5088612281"],"corresponding_institution_ids":["https://openalex.org/I184942183"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7875,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74653807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.6613397598266602},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5984476208686829},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5377902984619141},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.5115786194801331},{"id":"https://openalex.org/keywords/complementarity-determining-region","display_name":"Complementarity determining region","score":0.49333611130714417},{"id":"https://openalex.org/keywords/acquired-immune-system","display_name":"Acquired immune system","score":0.4932388663291931},{"id":"https://openalex.org/keywords/predictability","display_name":"Predictability","score":0.4515770971775055},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.4345264434814453},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43295663595199585},{"id":"https://openalex.org/keywords/binding-selectivity","display_name":"Binding selectivity","score":0.4151991605758667},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3392822742462158},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.28356438875198364},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25960779190063477},{"id":"https://openalex.org/keywords/monoclonal-antibody","display_name":"Monoclonal antibody","score":0.22752445936203003},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.16217559576034546},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14270853996276855}],"concepts":[{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.6613397598266602},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5984476208686829},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5377902984619141},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.5115786194801331},{"id":"https://openalex.org/C85630698","wikidata":"https://www.wikidata.org/wiki/Q3826179","display_name":"Complementarity determining region","level":4,"score":0.49333611130714417},{"id":"https://openalex.org/C193419808","wikidata":"https://www.wikidata.org/wiki/Q1645075","display_name":"Acquired immune system","level":3,"score":0.4932388663291931},{"id":"https://openalex.org/C197640229","wikidata":"https://www.wikidata.org/wiki/Q2534066","display_name":"Predictability","level":2,"score":0.4515770971775055},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.4345264434814453},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43295663595199585},{"id":"https://openalex.org/C96739231","wikidata":"https://www.wikidata.org/wiki/Q4914025","display_name":"Binding selectivity","level":2,"score":0.4151991605758667},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3392822742462158},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.28356438875198364},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25960779190063477},{"id":"https://openalex.org/C542903549","wikidata":"https://www.wikidata.org/wiki/Q422248","display_name":"Monoclonal antibody","level":3,"score":0.22752445936203003},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.16217559576034546},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14270853996276855},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D022801","descriptor_name":"Complementarity Determining Regions","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae537","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39438077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39438077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11495870","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11495870","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11495870/pdf/bbae537.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae537","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae537","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1434341185","display_name":"Origins and factors governing adaptation: Insights from experimental evolution and population genomic data","funder_award_id":"311341","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3514550006","display_name":null,"funder_award_id":"Centre","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3748656914","display_name":null,"funder_award_id":"Norway","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G3979439652","display_name":null,"funder_award_id":"331890","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G4530412850","display_name":null,"funder_award_id":"2019PG-T1D011","funder_id":"https://openalex.org/F4320309446","funder_display_name":"Leona M. and Harry B. Helmsley Charitable Trust"},{"id":"https://openalex.org/G512131340","display_name":null,"funder_award_id":"311341","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G5493932354","display_name":"ARCHITECTURE AND TOOLS FOR THE QUERY OF ANTIBODY AND T-CELL RECEPTOR SEQUENCING DATA REPOSITORIES FOR ENABLING IMPROVED PERSONALIZED MEDICINE AND IMMUNOTHERAPY","funder_award_id":"825821","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6544772784","display_name":null,"funder_award_id":"101125630","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7694509137","display_name":null,"funder_award_id":"300740","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320309446","display_name":"Leona M. and Harry B. Helmsley Charitable Trust","ror":"https://ror.org/011x6n313"},{"id":"https://openalex.org/F4320310082","display_name":"Stiftelsen Kristian Gerhard Jebsen","ror":"https://ror.org/021g6tq38"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1483854882","https://openalex.org/W1485457998","https://openalex.org/W1590538302","https://openalex.org/W2024651005","https://openalex.org/W2031011895","https://openalex.org/W2055395946","https://openalex.org/W2091477384","https://openalex.org/W2101234009","https://openalex.org/W2132983397","https://openalex.org/W2605177850","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2909634875","https://openalex.org/W2926687552","https://openalex.org/W2946835482","https://openalex.org/W2949975396","https://openalex.org/W2995682549","https://openalex.org/W2996933123","https://openalex.org/W3009865719","https://openalex.org/W3011885318","https://openalex.org/W3015232327","https://openalex.org/W3020331344","https://openalex.org/W3047127476","https://openalex.org/W3048782167","https://openalex.org/W3095930322","https://openalex.org/W3101138461","https://openalex.org/W3103855458","https://openalex.org/W3134285993","https://openalex.org/W3135351475","https://openalex.org/W3138783506","https://openalex.org/W3156522942","https://openalex.org/W3196626346","https://openalex.org/W3211434666","https://openalex.org/W3216334900","https://openalex.org/W4220959747","https://openalex.org/W4226199741","https://openalex.org/W4282917532","https://openalex.org/W4285593676","https://openalex.org/W4285799460","https://openalex.org/W4292634236","https://openalex.org/W4294956060","https://openalex.org/W4310949661","https://openalex.org/W4311619464","https://openalex.org/W4317565748","https://openalex.org/W4319159750","https://openalex.org/W4362659805","https://openalex.org/W4380882762","https://openalex.org/W4387719040","https://openalex.org/W4387866923","https://openalex.org/W4393319388","https://openalex.org/W6675354045","https://openalex.org/W6780824383"],"related_works":["https://openalex.org/W2726467123","https://openalex.org/W2064726690","https://openalex.org/W4252678288","https://openalex.org/W4254065731","https://openalex.org/W1607297154","https://openalex.org/W4210820789","https://openalex.org/W1980752565","https://openalex.org/W3158137070","https://openalex.org/W2028766223","https://openalex.org/W2290985849"],"abstract_inverted_index":{"Adaptive":[0],"immune":[1,26,40,52],"receptors,":[2,8],"such":[3,157],"as":[4,190],"antibodies":[5],"and":[6,95,101],"T-cell":[7],"recognize":[9],"foreign":[10],"threats":[11],"with":[12],"exquisite":[13],"specificity.":[14],"A":[15],"major":[16],"challenge":[17],"in":[18,29,64,91],"adaptive":[19],"immunology":[20],"is":[21],"discovering":[22],"the":[23,33,46,58,65,145,164],"rules":[24],"governing":[25],"receptor-antigen":[27],"binding":[28,35,48,94,171,198],"order":[30],"to":[31,83,98],"predict":[32],"antigen":[34,47,93,170,197],"status":[36,49],"of":[37,50,60,106,118,134],"previously":[38],"unseen":[39,99],"receptors.":[41],"Many":[42],"studies":[43],"assume":[44],"that":[45,122,143,166],"an":[51],"receptor":[53],"may":[54,172],"be":[55,173],"determined":[56,175],"by":[57,176],"presence":[59],"a":[61,81,107,132,138,150,177,191],"short":[62,85,178],"motif":[63],"complementarity":[66],"determining":[67],"region":[68],"3":[69],"(CDR3),":[70],"disregarding":[71],"other":[72],"amino":[73,120],"acids.":[74],"To":[75],"test":[76],"this":[77],"assumption,":[78],"we":[79],"present":[80],"method":[82],"discover":[84],"motifs":[86,117],"which":[87],"show":[88],"high":[89,124],"precision":[90,125],"predicting":[92],"generalize":[96],"well":[97],"simulated":[100],"experimental":[102,129,183],"data.":[103,130],"Our":[104],"analysis":[105],"mutagenesis-based":[108],"antibody":[109],"dataset":[110,148],"reveals":[111],"11":[112],"336":[113],"position-specific,":[114],"mostly":[115],"gapped":[116],"3-5":[119],"acids":[121],"retain":[123],"on":[126,144],"independently":[127,146],"generated":[128,147],"Using":[131],"subset":[133],"only":[135],"178":[136],"motifs,":[137],"simple":[139],"classifier":[140],"was":[141],"made":[142],"outperformed":[149],"deep":[151],"learning":[152],"model":[153],"proposed":[154],"specifically":[155],"for":[156,167,193],"datasets.":[158],"In":[159],"conclusion,":[160],"our":[161,186],"findings":[162],"support":[163],"notion":[165],"some":[168],"antibodies,":[169],"largely":[174],"CDR3":[179],"motif.":[180],"As":[181],"more":[182],"data":[184],"emerge,":[185],"methodology":[187],"could":[188],"serve":[189],"foundation":[192],"in-depth":[194],"investigations":[195],"into":[196],"signals.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
