{"id":"https://openalex.org/W4403516090","doi":"https://doi.org/10.1093/bib/bbae526","title":"scMGATGRN: a multiview graph attention network\u2013based method for inferring gene regulatory networks from single-cell transcriptomic data","display_name":"scMGATGRN: a multiview graph attention network\u2013based method for inferring gene regulatory networks from single-cell transcriptomic data","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403516090","doi":"https://doi.org/10.1093/bib/bbae526","pmid":"https://pubmed.ncbi.nlm.nih.gov/39417321"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae526","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae526","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101924090","display_name":"Lin Yuan","orcid":"https://orcid.org/0000-0002-9694-8191"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lin Yuan","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102203105","display_name":"Ling Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Zhao","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051199839","display_name":"Yufeng Jiang","orcid":"https://orcid.org/0000-0003-4553-4834"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yufeng Jiang","raw_affiliation_strings":["Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Computing Power Network and Information Security , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Qilu University of Technology (Shandong Academy of Sciences) , Ministry of Education, Shandong Computer Science Center, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"Shandong Engineering Research Center of Big Data Applied Technology , Faculty of Computer Science and Technology, , 3501 Daxue Road, 250353, Shandong ,","institution_ids":[]},{"raw_affiliation_string":"Shandong Provincial Key Laboratory of Industrial Network and Information System Security , Shandong Fundamental Research Center for Computer Science, 3501 Daxue Road, 250353, Shandong ,","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089051425","display_name":"Zhen Shen","orcid":"https://orcid.org/0000-0001-7572-9195"},"institutions":[{"id":"https://openalex.org/I4210115515","display_name":"Nanyang Institute of Technology","ror":"https://ror.org/0203c2755","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210115515"]},{"id":"https://openalex.org/I97750245","display_name":"Software (Spain)","ror":"https://ror.org/02ethns06","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210087817","https://openalex.org/I97750245"]}],"countries":["CN","ES"],"is_corresponding":false,"raw_author_name":"Zhen Shen","raw_affiliation_strings":["Nanyang Institute of Technology , , 80 Changjiang Road, 473004, Henan ,","School of Computer and Software , , 80 Changjiang Road, 473004, Henan ,"],"affiliations":[{"raw_affiliation_string":"Nanyang Institute of Technology , , 80 Changjiang Road, 473004, Henan ,","institution_ids":["https://openalex.org/I4210115515"]},{"raw_affiliation_string":"School of Computer and Software , , 80 Changjiang Road, 473004, Henan ,","institution_ids":["https://openalex.org/I97750245"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103099900","display_name":"Qinhu Zhang","orcid":"https://orcid.org/0000-0002-8723-7355"},"institutions":[{"id":"https://openalex.org/I127108677","display_name":"Eastern Institute of Technology","ror":"https://ror.org/00ct9cz38","country_code":"NZ","type":"education","lineage":["https://openalex.org/I127108677","https://openalex.org/I4387152882"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Qinhu Zhang","raw_affiliation_strings":["Eastern Institute of Technology , , 568 Tongxin Road, 315201, Zhejiang ,","Ningbo Institute of Digital Twin , , 568 Tongxin Road, 315201, Zhejiang ,"],"affiliations":[{"raw_affiliation_string":"Eastern Institute of Technology , , 568 Tongxin Road, 315201, Zhejiang ,","institution_ids":["https://openalex.org/I127108677"]},{"raw_affiliation_string":"Ningbo Institute of Digital Twin , , 568 Tongxin Road, 315201, Zhejiang ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100394512","display_name":"Mingyu Zhang","orcid":"https://orcid.org/0000-0001-7907-3971"},"institutions":[{"id":"https://openalex.org/I4210124907","display_name":"Zhongshan Hospital of Xiamen University","ror":"https://ror.org/02z125451","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210124907"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Zhang","raw_affiliation_strings":["Department of Pediatrics , , 201 Hubinnan Road, 361004, Fujian ,","Zhongshan Hospital Xiamen University , , 201 Hubinnan Road, 361004, Fujian ,"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics , , 201 Hubinnan Road, 361004, Fujian ,","institution_ids":[]},{"raw_affiliation_string":"Zhongshan Hospital Xiamen University , , 201 Hubinnan Road, 361004, Fujian ,","institution_ids":["https://openalex.org/I4210124907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113323469","display_name":"Chun-Hou Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["Anhui University , School of Artificial Intelligence, , 111 Jiulong Road, 230601, Anhui ,","Key Lab of Intelligent Computing and Signal Processing of Ministry of Education , School of Artificial Intelligence, , 111 Jiulong Road, 230601, Anhui ,"],"affiliations":[{"raw_affiliation_string":"Anhui University , School of Artificial Intelligence, , 111 Jiulong Road, 230601, Anhui ,","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"Key Lab of Intelligent Computing and Signal Processing of Ministry of Education , School of Artificial Intelligence, , 111 Jiulong Road, 230601, Anhui ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I127108677","display_name":"Eastern Institute of Technology","ror":"https://ror.org/00ct9cz38","country_code":"NZ","type":"education","lineage":["https://openalex.org/I127108677","https://openalex.org/I4387152882"]},{"id":"https://openalex.org/I4210128175","display_name":"Shanghai East Hospital","ror":"https://ror.org/038xmzj21","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210128175"]}],"countries":["CN","NZ"],"is_corresponding":false,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Eastern Institute of Technology , , 568 Tongxin Road, 315201, Zhejiang ,","Institute for Regenerative Medicine , Medical Innovation Center and State Key Laboratory of Cardiology, Shanghai East Hospital, School of Life Sciences and Technology, , 1239 Siping Road, 200123, Shanghai ,","Ningbo Institute of Digital Twin , , 568 Tongxin Road, 315201, Zhejiang ,","Tongji University , Medical Innovation Center and State Key Laboratory of Cardiology, Shanghai East Hospital, School of Life Sciences and Technology, , 1239 Siping Road, 200123, Shanghai ,"],"affiliations":[{"raw_affiliation_string":"Eastern Institute of Technology , , 568 Tongxin Road, 315201, Zhejiang ,","institution_ids":["https://openalex.org/I127108677"]},{"raw_affiliation_string":"Institute for Regenerative Medicine , Medical Innovation Center and State Key Laboratory of Cardiology, Shanghai East Hospital, School of Life Sciences and Technology, , 1239 Siping Road, 200123, Shanghai ,","institution_ids":["https://openalex.org/I4210128175"]},{"raw_affiliation_string":"Ningbo Institute of Digital Twin , , 568 Tongxin Road, 315201, Zhejiang ,","institution_ids":[]},{"raw_affiliation_string":"Tongji University , Medical Innovation Center and State Key Laboratory of Cardiology, Shanghai East Hospital, School of Life Sciences and Technology, , 1239 Siping Road, 200123, Shanghai ,","institution_ids":["https://openalex.org/I4210128175"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101924090"],"corresponding_institution_ids":["https://openalex.org/I152269853","https://openalex.org/I154099455","https://openalex.org/I4210142748"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":12.0017,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.9922466,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6795885562896729},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6406599879264832},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6273028254508972},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5591748356819153},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5580567717552185},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.47377800941467285},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3592519760131836},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3577866554260254},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.26408153772354126},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2616736888885498},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23321330547332764},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1877060830593109}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6795885562896729},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6406599879264832},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6273028254508972},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5591748356819153},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5580567717552185},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47377800941467285},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3592519760131836},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3577866554260254},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.26408153772354126},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2616736888885498},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23321330547332764},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1877060830593109}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae526","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39417321","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39417321","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11484520","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11484520","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11484520/pdf/bbae526.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae526","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae526","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1141093333","display_name":null,"funder_award_id":"2021JJA170199","funder_id":"https://openalex.org/F4320322768","funder_display_name":"Natural Science Foundation of Guangxi Province"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G173893127","display_name":null,"funder_award_id":"ZR2024MF011","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G1857610291","display_name":null,"funder_award_id":"62073231","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1879373454","display_name":null,"funder_award_id":"2023J","funder_id":"https://openalex.org/F4320332587","funder_display_name":"Natural Science Foundation of Ningbo"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G37568934","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5280656057","display_name":null,"funder_award_id":"62372318","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5774277518","display_name":null,"funder_award_id":"62472239","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G591479136","display_name":null,"funder_award_id":"ZR2020","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6332332648","display_name":null,"funder_award_id":"62002189","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G643023014","display_name":null,"funder_award_id":"62372255","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6915093697","display_name":null,"funder_award_id":"ZR2020QF038","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7699868062","display_name":null,"funder_award_id":"2021JJA170204","funder_id":"https://openalex.org/F4320322768","funder_display_name":"Natural Science Foundation of Guangxi Province"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7894669521","display_name":null,"funder_award_id":"U22A2039","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7969017031","display_name":null,"funder_award_id":"2023J199","funder_id":"https://openalex.org/F4320332587","funder_display_name":"Natural Science Foundation of Ningbo"},{"id":"https://openalex.org/G906490537","display_name":null,"funder_award_id":"62333018","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308724","display_name":"Texas Space Grant Consortium","ror":"https://ror.org/05k1jx057"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322768","display_name":"Natural Science Foundation of Guangxi Province","ror":null},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320324887","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55"},{"id":"https://openalex.org/F4320328720","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608"},{"id":"https://openalex.org/F4320332587","display_name":"Natural Science Foundation of Ningbo","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W1574447377","https://openalex.org/W2017102965","https://openalex.org/W2076513103","https://openalex.org/W2126750365","https://openalex.org/W2175370850","https://openalex.org/W2616922646","https://openalex.org/W2782454362","https://openalex.org/W2803394774","https://openalex.org/W2900310474","https://openalex.org/W2900569176","https://openalex.org/W2901027836","https://openalex.org/W2901292166","https://openalex.org/W2951424836","https://openalex.org/W2952535935","https://openalex.org/W2952794339","https://openalex.org/W2964315448","https://openalex.org/W2970073459","https://openalex.org/W2980495984","https://openalex.org/W2996140569","https://openalex.org/W2997831639","https://openalex.org/W3036206386","https://openalex.org/W3045910546","https://openalex.org/W3080500495","https://openalex.org/W3109356327","https://openalex.org/W3138479716","https://openalex.org/W3159699835","https://openalex.org/W3164766680","https://openalex.org/W3165548017","https://openalex.org/W3174990076","https://openalex.org/W3186348651","https://openalex.org/W3196429001","https://openalex.org/W3215039417","https://openalex.org/W4206994921","https://openalex.org/W4210881488","https://openalex.org/W4213136259","https://openalex.org/W4214875743","https://openalex.org/W4226156505","https://openalex.org/W4290930137","https://openalex.org/W4367845921","https://openalex.org/W4386307602","https://openalex.org/W4386699707","https://openalex.org/W4387256971","https://openalex.org/W4388870182","https://openalex.org/W4397031715","https://openalex.org/W4401743650"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W3150324899","https://openalex.org/W4392059188","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W2523545060"],"abstract_inverted_index":{"The":[0,103,124,194,216],"gene":[1,100,121],"regulatory":[2,20,101,122],"network":[3],"(GRN)":[4],"plays":[5],"a":[6,69],"vital":[7],"role":[8],"in":[9,119,181,185,213],"understanding":[10],"the":[11,99,120,130,148,208],"structure":[12],"and":[13,22,41,55,89,112,137,163,183,218],"dynamics":[14],"of":[15,86,98,117,133,150,191,210,220],"cellular":[16],"systems,":[17],"revealing":[18],"complex":[19],"relationships,":[21],"exploring":[23],"disease":[24],"mechanisms.":[25],"Recently,":[26],"deep":[27],"learning":[28,161],"(DL)-based":[29],"methods":[30,47,158,204],"have":[31],"been":[32],"proposed":[33],"to":[34,80],"infer":[35,81],"GRNs":[36],"from":[37,59,143,176],"single-cell":[38,171],"transcriptomic":[39],"data":[40,219],"achieved":[42],"impressive":[43],"performance.":[44],"However,":[45],"these":[46],"do":[48],"not":[49,197],"fully":[50],"utilize":[51,108],"graph":[52,75],"topological":[53],"information":[54,58,111,116],"high-order":[56,113],"neighbor":[57,114],"multiple":[60],"receptive":[61],"fields.":[62],"To":[63,146],"overcome":[64],"those":[65],"limitations,":[66],"we":[67,152],"propose":[68],"novel":[70],"model":[71,105,212],"based":[72],"on":[73,168,226],"multiview":[74,104],"attention":[76,91,126],"network,":[77],"namely,":[78],"scMGATGRN,":[79,151],"GRNs.":[82,215],"scMGATGRN":[83,201,221],"mainly":[84],"consists":[85],"GAT,":[87],"multiview,":[88],"view-level":[90,125],"mechanism.":[92],"GAT":[93],"can":[94,106],"extract":[95],"essential":[96],"features":[97],"network.":[102,123],"simultaneously":[107],"local":[109],"feature":[110,115],"nodes":[118],"mechanism":[127],"dynamically":[128],"adjusts":[129],"relative":[131],"importance":[132],"node":[134,140],"embedding":[135,141],"representations":[136,142],"efficiently":[138],"aggregates":[139],"two":[144],"views.":[145],"verify":[147],"effectiveness":[149],"compared":[153],"its":[154],"performance":[155],"with":[156,187],"10":[157],"(five":[159],"shallow":[160],"algorithms":[162],"five":[164,177],"state-of-the-art":[165],"DL-based":[166],"methods)":[167],"seven":[169],"benchmark":[170],"RNA":[172],"sequencing":[173],"(scRNA-seq)":[174],"datasets":[175],"cell":[178],"lines":[179],"(two":[180],"human":[182],"three":[184],"mouse)":[186],"four":[188],"different":[189],"kinds":[190],"ground-truth":[192],"networks.":[193],"experimental":[195],"results":[196],"only":[198],"show":[199],"that":[200],"outperforms":[202],"competing":[203],"but":[205],"also":[206],"demonstrate":[207],"potential":[209],"this":[211],"inferring":[214],"code":[217],"are":[222],"made":[223],"freely":[224],"available":[225],"GitHub":[227],"(https://github.com/nathanyl/scMGATGRN).":[228]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":44}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}