{"id":"https://openalex.org/W4403836115","doi":"https://doi.org/10.1093/bib/bbae524","title":"BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data","display_name":"BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403836115","doi":"https://doi.org/10.1093/bib/bbae524","pmid":"https://pubmed.ncbi.nlm.nih.gov/39470304"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae524","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae524","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae524/60136024/bbae524.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae524/60136024/bbae524.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101304089","display_name":"Yanghong Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yanghong Guo","raw_affiliation_strings":["Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080509522","display_name":"Bencong Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]},{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK","US"],"is_corresponding":false,"raw_author_name":"Bencong Zhu","raw_affiliation_strings":["Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,","Department of Statistics, The Chinese University of Hong Kong , Ma Liu Shui, Hong Kong ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Department of Statistics, The Chinese University of Hong Kong , Ma Liu Shui, Hong Kong ,","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100569703","display_name":"Chen Tang","orcid":"https://orcid.org/0000-0001-7010-2203"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen Tang","raw_affiliation_strings":["Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002454159","display_name":"Ruichen Rong","orcid":"https://orcid.org/0000-0002-3205-8915"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruichen Rong","raw_affiliation_strings":["Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064884940","display_name":"Ying Ma","orcid":"https://orcid.org/0000-0003-3791-7018"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Ma","raw_affiliation_strings":["Department of Biostatistics, Brown University , 69 Brown Street, Providence, RI 02912 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Brown University , 69 Brown Street, Providence, RI 02912 ,","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009964025","display_name":"Guanghua Xiao","orcid":"https://orcid.org/0000-0001-9387-9883"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guanghua Xiao","raw_affiliation_strings":["Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079210379","display_name":"Lin Xu","orcid":"https://orcid.org/0000-0001-5815-4457"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lin Xu","raw_affiliation_strings":["Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,"],"raw_orcid":"https://orcid.org/0000-0001-5815-4457","affiliations":[{"raw_affiliation_string":"Quantitative Biomedical Research Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Southwestern Medical Center , Peter O\u2019Donnell Jr. School of Public Health, , 5323 Harry Hines Blvd, Dallas, TX 75390 ,","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100640251","display_name":"Qiwei Li","orcid":"https://orcid.org/0000-0002-1020-3050"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiwei Li","raw_affiliation_strings":["Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,"],"raw_orcid":"https://orcid.org/0000-0002-1020-3050","affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, The University of Texas at Dallas , 800 W Campbell Rd, Richardson, TX 75080 ,","institution_ids":["https://openalex.org/I162577319"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101304089"],"corresponding_institution_ids":["https://openalex.org/I162577319"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.5586,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.83222896,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7447065711021423},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7282001376152039},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6949522495269775},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6063985228538513},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5825965404510498},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5711736083030701},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5616792440414429},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.5464687347412109},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5256085395812988},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5048196911811829},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.43724754452705383},{"id":"https://openalex.org/keywords/spatial-contextual-awareness","display_name":"Spatial contextual awareness","score":0.43241772055625916},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35837873816490173},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10874414443969727},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.10216516256332397},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09383007884025574}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7447065711021423},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7282001376152039},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6949522495269775},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6063985228538513},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5825965404510498},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5711736083030701},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5616792440414429},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.5464687347412109},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5256085395812988},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5048196911811829},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.43724754452705383},{"id":"https://openalex.org/C64754055","wikidata":"https://www.wikidata.org/wiki/Q7574053","display_name":"Spatial contextual awareness","level":2,"score":0.43241772055625916},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35837873816490173},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10874414443969727},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.10216516256332397},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09383007884025574},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae524","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae524","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae524/60136024/bbae524.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39470304","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39470304","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11514062","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11514062","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11514062/pdf/bbae524.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae524","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae524","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae524/60136024/bbae524.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1434198443","display_name":null,"funder_award_id":"RP230330","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1629736193","display_name":null,"funder_award_id":"2210912","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2158671169","display_name":null,"funder_award_id":"R01DK127037","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2204202041","display_name":null,"funder_award_id":"R01GM140012","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2633643839","display_name":null,"funder_award_id":"CPRIT RP230330","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G2724051463","display_name":null,"funder_award_id":"R21CA259771","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3263034867","display_name":null,"funder_award_id":"R01CA263079","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3267197192","display_name":null,"funder_award_id":"RP220032","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G350416513","display_name":null,"funder_award_id":"1R01GM141519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G374985853","display_name":null,"funder_award_id":"R01DE030656","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4814625141","display_name":null,"funder_award_id":"R01GM141519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6057534710","display_name":null,"funder_award_id":"U01CA249245","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6892568366","display_name":null,"funder_award_id":"RP240521","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G6922329781","display_name":null,"funder_award_id":"UM1HG011996","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7302085456","display_name":null,"funder_award_id":"RP230330","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G790346596","display_name":null,"funder_award_id":"R01HL144969","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8045388038","display_name":null,"funder_award_id":"RP180319","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G81203255","display_name":null,"funder_award_id":"RP170152","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G8405555901","display_name":null,"funder_award_id":"RP200103","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G8754848668","display_name":null,"funder_award_id":"2113674","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307428","display_name":"Rally Foundation","ror":"https://ror.org/01mkym489"},{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403836115.pdf"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W2011832962","https://openalex.org/W2029323483","https://openalex.org/W2042789810","https://openalex.org/W2069089843","https://openalex.org/W2109820980","https://openalex.org/W2126537932","https://openalex.org/W2131681506","https://openalex.org/W2141131780","https://openalex.org/W2187089797","https://openalex.org/W2318699865","https://openalex.org/W2343956310","https://openalex.org/W2471536144","https://openalex.org/W2560322684","https://openalex.org/W2599879124","https://openalex.org/W2765507708","https://openalex.org/W2798643036","https://openalex.org/W2809368942","https://openalex.org/W2889453805","https://openalex.org/W2899235059","https://openalex.org/W2902652978","https://openalex.org/W2907783748","https://openalex.org/W2915848182","https://openalex.org/W2937443931","https://openalex.org/W2951158909","https://openalex.org/W2963037989","https://openalex.org/W2964227007","https://openalex.org/W2964824489","https://openalex.org/W2972399366","https://openalex.org/W2972983657","https://openalex.org/W2974825848","https://openalex.org/W2984472267","https://openalex.org/W3002417351","https://openalex.org/W3006084867","https://openalex.org/W3021920958","https://openalex.org/W3032266082","https://openalex.org/W3048017942","https://openalex.org/W3099768174","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3120427588","https://openalex.org/W3126958162","https://openalex.org/W3165120573","https://openalex.org/W3173882906","https://openalex.org/W3205213119","https://openalex.org/W3211488171","https://openalex.org/W4206826076","https://openalex.org/W4213392791","https://openalex.org/W4214778995","https://openalex.org/W4220765701","https://openalex.org/W4225257442","https://openalex.org/W4226192560","https://openalex.org/W4280494993","https://openalex.org/W4289745500","https://openalex.org/W4306406844","https://openalex.org/W4322738920","https://openalex.org/W4366824929","https://openalex.org/W4386692444","https://openalex.org/W4387808846","https://openalex.org/W4392960832","https://openalex.org/W4399387298","https://openalex.org/W4399388318","https://openalex.org/W6680827157"],"related_works":["https://openalex.org/W3148227991","https://openalex.org/W1486593826","https://openalex.org/W2771174107","https://openalex.org/W1536965844","https://openalex.org/W2344941099","https://openalex.org/W4322212724","https://openalex.org/W2106788855","https://openalex.org/W3081561710","https://openalex.org/W2477413883","https://openalex.org/W2463773089"],"abstract_inverted_index":{"The":[0,88],"field":[1],"of":[2,12,75,85,125,140,155],"spatially":[3],"resolved":[4],"transcriptomics":[5],"(SRT)":[6],"has":[7],"greatly":[8],"advanced":[9],"our":[10],"understanding":[11],"cellular":[13],"microenvironments":[14],"by":[15],"integrating":[16],"spatial":[17,33,57,83,97,119,153],"information":[18,44,69],"with":[19,116],"molecular":[20,43],"data":[21],"collected":[22],"from":[23,70,106],"multiple":[24,60],"tissue":[25,108],"sections":[26],"or":[27],"individuals.":[28],"However,":[29],"methods":[30,39,127,137],"for":[31,128],"multi-sample":[32,76,118,158],"clustering":[34,120,141],"are":[35],"lacking,":[36],"and":[37,110,113,122,144],"existing":[38,136],"primarily":[40],"rely":[41],"on":[42],"alone.":[45],"This":[46],"paper":[47],"introduces":[48],"BayeSMART,":[49],"a":[50,123],"Bayesian":[51],"statistical":[52],"method":[53],"designed":[54],"to":[55,93],"identify":[56],"domains":[58],"across":[59],"samples.":[61],"BayeSMART":[62,92,115,147],"leverages":[63],"artificial":[64],"intelligence":[65],"(AI)-reconstructed":[66],"single-cell":[67],"level":[68],"the":[71,82,96,152],"paired":[72],"histology":[73],"images":[74],"SRT":[77,111,130,159],"datasets":[78,105],"while":[79],"simultaneously":[80],"considering":[81],"context":[84],"gene":[86],"expression.":[87],"AI":[89],"integration":[90],"enables":[91],"effectively":[94],"interpret":[95],"domains.":[98],"We":[99],"conducted":[100],"case":[101],"studies":[102],"using":[103],"four":[104],"various":[107],"types":[109],"platforms,":[112],"compared":[114],"alternative":[117],"approaches":[121],"number":[124],"state-of-the-art":[126],"single-sample":[129],"analysis,":[131],"demonstrating":[132],"that":[133],"it":[134],"surpasses":[135],"in":[138,157],"terms":[139],"accuracy,":[142],"interpretability,":[143],"computational":[145],"efficiency.":[146],"offers":[148],"new":[149],"insights":[150],"into":[151],"organization":[154],"cells":[156],"data.":[160]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-11T06:11:40.159057","created_date":"2025-10-10T00:00:00"}
