{"id":"https://openalex.org/W4403377694","doi":"https://doi.org/10.1093/bib/bbae506","title":"Pioneering bioinformatics with agent-based modelling: an innovative protocol to accurately forecast skin or respiratory allergic reactions to chemical sensitizers","display_name":"Pioneering bioinformatics with agent-based modelling: an innovative protocol to accurately forecast skin or respiratory allergic reactions to chemical sensitizers","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403377694","doi":"https://doi.org/10.1093/bib/bbae506","pmid":"https://pubmed.ncbi.nlm.nih.gov/39397426"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae506","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae506/59738580/bbae506.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae506/59738580/bbae506.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004880055","display_name":"Giulia Russo","orcid":"https://orcid.org/0000-0001-6616-7856"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Russo","raw_affiliation_strings":["Department of Drug and Health Sciences, University of Catania , V.le A. Doria, 6, 95125 Catania (IT),"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug and Health Sciences, University of Catania , V.le A. Doria, 6, 95125 Catania (IT),","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039844215","display_name":"Elena Crispino","orcid":"https://orcid.org/0000-0001-9289-4926"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Elena Crispino","raw_affiliation_strings":["Department of Biomedical and Biotechnological Sciences, University of Catania , Via S. Sofia, 63, 95125 Catania (IT),"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical and Biotechnological Sciences, University of Catania , Via S. Sofia, 63, 95125 Catania (IT),","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110547145","display_name":"Silvia Casati","orcid":null},"institutions":[{"id":"https://openalex.org/I1320557632","display_name":"Joint Commission","ror":"https://ror.org/03skrcz21","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1320557632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Silvia Casati","raw_affiliation_strings":["European Commission, Joint Research Centre (JRC) , Via Enrico Fermi, 2749 - TP 123 21027 - Ispra (VA),"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Commission, Joint Research Centre (JRC) , Via Enrico Fermi, 2749 - TP 123 21027 - Ispra (VA),","institution_ids":["https://openalex.org/I1320557632"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082724673","display_name":"Emanuela Corsini","orcid":"https://orcid.org/0000-0002-6927-5956"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Emanuela Corsini","raw_affiliation_strings":["Department of Pharmacological and Biomolecular Sciences, Universit\u00e0 degli studi di Milano , Via Balzaretti 9, 20133 Milano,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmacological and Biomolecular Sciences, Universit\u00e0 degli studi di Milano , Via Balzaretti 9, 20133 Milano,","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056503862","display_name":"Andrew Worth","orcid":"https://orcid.org/0000-0002-5303-0452"},"institutions":[{"id":"https://openalex.org/I1320557632","display_name":"Joint Commission","ror":"https://ror.org/03skrcz21","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1320557632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Worth","raw_affiliation_strings":["European Commission, Joint Research Centre (JRC) , Via Enrico Fermi, 2749 - TP 123 21027 - Ispra (VA),"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Commission, Joint Research Centre (JRC) , Via Enrico Fermi, 2749 - TP 123 21027 - Ispra (VA),","institution_ids":["https://openalex.org/I1320557632"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["Department of Drug and Health Sciences, University of Catania , V.le A. Doria, 6, 95125 Catania (IT),"],"raw_orcid":"https://orcid.org/0000-0003-1668-3320","affiliations":[{"raw_affiliation_string":"Department of Drug and Health Sciences, University of Catania , V.le A. Doria, 6, 95125 Catania (IT),","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044340074"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7793,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.70175842,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14072","display_name":"Immunotoxicology and immune responses","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T14072","display_name":"Immunotoxicology and immune responses","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12208","display_name":"Occupational exposure and asthma","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11033","display_name":"Contact Dermatitis and Allergies","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/2708","display_name":"Dermatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6746739149093628},{"id":"https://openalex.org/keywords/pubchem","display_name":"PubChem","score":0.6066181659698486},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5382604002952576},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4952980577945709},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.46547931432724},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.4652498662471771},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4283585548400879},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39067786931991577},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3576190173625946},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.145432710647583},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13376113772392273},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.1175852119922638}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6746739149093628},{"id":"https://openalex.org/C158180186","wikidata":"https://www.wikidata.org/wiki/Q278487","display_name":"PubChem","level":2,"score":0.6066181659698486},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5382604002952576},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4952980577945709},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.46547931432724},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.4652498662471771},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4283585548400879},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39067786931991577},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3576190173625946},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.145432710647583},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13376113772392273},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.1175852119922638},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000485","descriptor_name":"Allergens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006967","descriptor_name":"Hypersensitivity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000139","qualifier_name":"chemically induced","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012130","descriptor_name":"Respiratory Hypersensitivity","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae506","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae506/59738580/bbae506.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39397426","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39397426","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11471897","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11471897","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11471897/pdf/bbae506.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:air.unimi.it:2434/1113971","is_oa":true,"landing_page_url":"https://hdl.handle.net/2434/1113971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae506","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae506","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae506/59738580/bbae506.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334701","display_name":"Joint Research Centre","ror":"https://ror.org/04j5wtv36"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403377694.pdf","grobid_xml":"https://content.openalex.org/works/W4403377694.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1973753526","https://openalex.org/W1996482061","https://openalex.org/W2004590673","https://openalex.org/W2017932618","https://openalex.org/W2028614748","https://openalex.org/W2064979159","https://openalex.org/W2092646329","https://openalex.org/W2105000783","https://openalex.org/W2107543992","https://openalex.org/W2109491705","https://openalex.org/W2110298304","https://openalex.org/W2115185894","https://openalex.org/W2124775657","https://openalex.org/W2132629607","https://openalex.org/W2157846684","https://openalex.org/W2160594532","https://openalex.org/W2161488358","https://openalex.org/W2784733444","https://openalex.org/W2887146945","https://openalex.org/W2898924787","https://openalex.org/W3015438624","https://openalex.org/W3030054993","https://openalex.org/W3082606142","https://openalex.org/W3150740448","https://openalex.org/W3153288875","https://openalex.org/W3177828909","https://openalex.org/W3198742822","https://openalex.org/W4211109539","https://openalex.org/W4220907296","https://openalex.org/W4230355606","https://openalex.org/W4239353353","https://openalex.org/W4291003350","https://openalex.org/W4307819370","https://openalex.org/W4313335073","https://openalex.org/W4390916442","https://openalex.org/W4391743164","https://openalex.org/W6653010505"],"related_works":["https://openalex.org/W2104366126","https://openalex.org/W2547231910","https://openalex.org/W2235675062","https://openalex.org/W2177317049","https://openalex.org/W4293208996","https://openalex.org/W2169546341","https://openalex.org/W2127553917","https://openalex.org/W1505362105","https://openalex.org/W3138316305","https://openalex.org/W3161399237"],"abstract_inverted_index":{"The":[0,54,182,285,308],"assessment":[1],"of":[2,6,41,51,61,120,185,192,225,265,315,335,343,361],"the":[3,38,49,59,66,117,130,190,206,221,256,261,270,289,313,333,359],"allergenic":[4],"potential":[5,215,301,314],"chemicals,":[7],"crucial":[8,246],"for":[9,96,276,282,302],"ensuring":[10],"public":[11],"health":[12],"safety,":[13],"faces":[14],"challenges":[15],"in":[16,58,101,163,189,322,331],"accuracy":[17,262],"and":[18,84,93,105,122,129,170,214,223,232,263,279,346],"raises":[19],"ethical":[20,94],"concerns":[21],"due":[22],"to":[23,36,45,147,173,239,272,292,318,355],"reliance":[24],"on":[25],"animal":[26,52,320],"testing.":[27,53],"This":[28,157,237],"paper":[29],"presents":[30],"a":[31,90,111,245,352],"novel":[32],"bioinformatic":[33],"protocol":[34,271,350],"designed":[35],"address":[37],"critical":[39],"challenge":[40],"predicting":[42],"immune":[43,75,180,201,226,242,297,337],"responses":[44],"chemical":[46,97,121,176,323],"sensitizers":[47],"without":[48],"use":[50],"core":[55,183],"innovation":[56],"lies":[57,188],"integration":[60,342],"advanced":[62,194],"bioinformatics":[63],"tools,":[64],"including":[65,211],"Universal":[67],"Immune":[68],"System":[69],"Simulator":[70],"(UISS),":[71],"which":[72,251],"models":[73],"detailed":[74,200],"system":[76,197,202],"dynamics.":[77,203],"By":[78,204],"leveraging":[79,167],"data":[80,124,135],"from":[81,125,208],"structural":[82,137,158],"predictions":[83,138],"docking":[85,165,212],"simulations,":[86,166],"our":[87,186,266,316,349],"approach":[88,109,354],"provides":[89],"more":[91],"accurate":[92],"method":[95,187,317],"safety":[98,324,362],"evaluations,":[99,357],"especially":[100],"distinguishing":[102,228],"between":[103,229,255,294],"skin":[104,231,277],"respiratory":[106,234,283],"sensitizers.":[107],"Our":[108],"integrates":[110],"comprehensive":[112],"eight-step":[113],"process,":[114],"beginning":[115],"with":[116],"meticulous":[118],"collection":[119],"protein":[123],"databases":[126],"like":[127],"PubChem":[128],"Protein":[131],"Data":[132],"Bank.":[133],"Following":[134],"acquisition,":[136],"are":[139],"performed":[140],"using":[141],"cutting-edge":[142],"tools":[143],"such":[144],"as":[145],"AlphaFold":[146],"model":[148],"proteins":[149],"whose":[150],"structures":[151],"have":[152],"not":[153,310],"been":[154],"previously":[155],"elucidated.":[156],"information":[159],"is":[160,244],"then":[161],"utilized":[162],"subsequent":[164],"both":[168],"ligand-protein":[169],"protein-protein":[171],"interactions":[172],"predict":[174,240],"how":[175],"compounds":[177],"may":[178],"trigger":[179],"responses.":[181],"novelty":[184],"application":[191],"UISS-an":[193],"agent-based":[195],"modelling":[196],"that":[198],"simulates":[199],"inputting":[205],"results":[207,286,309],"earlier":[209],"stages,":[210],"scores":[213],"epitope":[216],"identifications,":[217],"UISS":[218],"meticulously":[219],"forecasts":[220],"type":[222],"severity":[224],"responses,":[227,298],"Th1-mediated":[230],"Th2-mediated":[233],"allergic":[235],"reactions.":[236,338],"ability":[238,291],"distinct":[241,296],"pathways":[243],"advance":[247],"over":[248],"current":[249],"methods,":[250],"often":[252],"cannot":[253],"differentiate":[254,293],"sensitization":[257],"mechanisms.":[258],"To":[259],"validate":[260],"robustness":[264],"approach,":[267],"we":[268],"applied":[269],"well-known":[273],"sensitizers:":[274],"2,4-dinitrochlorobenzene":[275],"allergies":[278],"trimellitic":[280],"anhydride":[281],"allergies.":[284],"clearly":[287],"demonstrate":[288],"protocol's":[290],"these":[295],"underscoring":[299],"its":[300,329],"replacing":[303],"traditional":[304],"animal-based":[305],"testing":[306,321],"methods.":[307],"only":[311],"support":[312],"replace":[319],"assessments":[325],"but":[326],"also":[327],"highlight":[328],"role":[330],"enhancing":[332],"understanding":[334],"chemical-induced":[336],"Through":[339],"this":[340],"innovative":[341],"computational":[344],"biology":[345],"immunological":[347],"modelling,":[348],"offers":[351],"transformative":[353],"toxicological":[356],"increasing":[358],"reliability":[360],"assessments.":[363]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
