{"id":"https://openalex.org/W4403319440","doi":"https://doi.org/10.1093/bib/bbae497","title":"PathMethy: an interpretable AI framework for cancer origin tracing based on DNA methylation","display_name":"PathMethy: an interpretable AI framework for cancer origin tracing based on DNA methylation","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4403319440","doi":"https://doi.org/10.1093/bib/bbae497","pmid":"https://pubmed.ncbi.nlm.nih.gov/39391931"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae497","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae497","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030762640","display_name":"Jiajing Xie","orcid":"https://orcid.org/0009-0004-0853-5859"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajing Xie","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114171301","display_name":"Yu-Hang Song","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuhang Song","raw_affiliation_strings":["School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101903345","display_name":"Hailong Zheng","orcid":"https://orcid.org/0009-0001-4772-2356"},"institutions":[{"id":"https://openalex.org/I4210164009","display_name":"Guangdong Baiyun University","ror":"https://ror.org/04wmrj902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210164009"]},{"id":"https://openalex.org/I58200834","display_name":"Southern Medical University","ror":"https://ror.org/01vjw4z39","country_code":"CN","type":"education","lineage":["https://openalex.org/I58200834"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hailong Zheng","raw_affiliation_strings":["Department of Bioinformatics , School of Basic Medical Sciences, , No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong, 510515 ,","Southern Medical University , School of Basic Medical Sciences, , No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong, 510515 ,"],"raw_orcid":"https://orcid.org/0009-0001-4772-2356","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics , School of Basic Medical Sciences, , No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong, 510515 ,","institution_ids":["https://openalex.org/I4210164009"]},{"raw_affiliation_string":"Southern Medical University , School of Basic Medical Sciences, , No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong, 510515 ,","institution_ids":["https://openalex.org/I58200834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076414326","display_name":"Shijie Luo","orcid":"https://orcid.org/0000-0001-8693-2412"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shijie Luo","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102712942","display_name":"Ying Chen","orcid":"https://orcid.org/0000-0003-1960-419X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Chen","raw_affiliation_strings":["School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109799739","display_name":"Chen Zhang","orcid":"https://orcid.org/0009-0009-6150-0854"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Zhang","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068270780","display_name":"Rongshan Yu","orcid":"https://orcid.org/0000-0003-2179-173X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongshan Yu","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,"],"raw_orcid":"https://orcid.org/0000-0003-2179-173X","affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"School of Informatics, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361005 ,","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003262028","display_name":"Mengsha Tong","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengsha Tong","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","State Key Laboratory of Cellular Stress Biology , School of Life Sciences, Faculty of Medicine and Life Sciences, , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","Xiamen University , School of Life Sciences, Faculty of Medicine and Life Sciences, , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Cellular Stress Biology , School of Life Sciences, Faculty of Medicine and Life Sciences, , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Xiamen University , School of Life Sciences, Faculty of Medicine and Life Sciences, , No. 4221-121 South Xiang'an Road, Xiamen, Fujian 361102 ,","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.1397,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.81668896,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12379","display_name":"Cancer Diagnosis and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12379","display_name":"Cancer Diagnosis and Treatment","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13383","display_name":"Tumors and Oncological Cases","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.6719872951507568},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.6491660475730896},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6140651702880859},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.48188573122024536},{"id":"https://openalex.org/keywords/crosstalk","display_name":"Crosstalk","score":0.4626738727092743},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4415639042854309},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42820513248443604},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.40554001927375793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4004649519920349},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.368177592754364},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22395500540733337},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2116985321044922},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09094616770744324}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6719872951507568},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.6491660475730896},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6140651702880859},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.48188573122024536},{"id":"https://openalex.org/C169822122","wikidata":"https://www.wikidata.org/wiki/Q230187","display_name":"Crosstalk","level":2,"score":0.4626738727092743},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4415639042854309},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42820513248443604},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.40554001927375793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4004649519920349},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.368177592754364},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22395500540733337},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2116985321044922},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09094616770744324},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae497","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39391931","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39391931","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11467402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11467402","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11467402/pdf/bbae497.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae497","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6590297191","display_name":null,"funder_award_id":"82002529","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325434","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W1998767819","https://openalex.org/W2052722391","https://openalex.org/W2079853681","https://openalex.org/W2161179758","https://openalex.org/W2496651649","https://openalex.org/W2507892764","https://openalex.org/W2522911430","https://openalex.org/W2547366125","https://openalex.org/W2634335102","https://openalex.org/W2791845486","https://openalex.org/W2795441251","https://openalex.org/W2795622837","https://openalex.org/W2804858690","https://openalex.org/W2901482699","https://openalex.org/W2905731707","https://openalex.org/W2952214509","https://openalex.org/W2953218432","https://openalex.org/W2999905431","https://openalex.org/W3035422918","https://openalex.org/W3113527417","https://openalex.org/W3176724166","https://openalex.org/W3186318400","https://openalex.org/W4200159165","https://openalex.org/W4200625671","https://openalex.org/W4205454839","https://openalex.org/W4285387016","https://openalex.org/W4309009637","https://openalex.org/W4316096017","https://openalex.org/W4363679502","https://openalex.org/W4366395412","https://openalex.org/W4383956970","https://openalex.org/W4386741438","https://openalex.org/W4389326242","https://openalex.org/W4396939663","https://openalex.org/W4399735300","https://openalex.org/W6739901393","https://openalex.org/W6798546622","https://openalex.org/W6851516424","https://openalex.org/W6859298233"],"related_works":["https://openalex.org/W2214376880","https://openalex.org/W3212149434","https://openalex.org/W2073893804","https://openalex.org/W2291484187","https://openalex.org/W2902329290","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744"],"abstract_inverted_index":{"Despite":[0],"advanced":[1],"diagnostics,":[2],"3%-5%":[3],"of":[4,10,26,42,49,88,100,108,126,133],"cases":[5,107],"remain":[6],"classified":[7],"as":[8],"cancer":[9,67],"unknown":[11],"primary":[12,77,90],"(CUP).":[13],"DNA":[14,56],"methylation,":[15],"an":[16],"important":[17],"epigenetic":[18],"feature,":[19],"is":[20,147],"essential":[21],"for":[22,143],"determining":[23],"the":[24,47,72,86],"origin":[25,48],"metastatic":[27,92],"tumors.":[28],"We":[29],"presented":[30],"PathMethy,":[31],"a":[32,97,130,139],"novel":[33],"Transformer":[34],"model":[35],"integrated":[36],"with":[37,102],"functional":[38,118,124],"categories":[39,125],"and":[40,69,91,120,145],"crosstalk":[41],"pathways,":[43,117,127],"to":[44],"accurately":[45,71],"trace":[46],"tumors":[50,93],"in":[51,63,106],"CUP":[52],"samples":[53],"based":[54],"on":[55],"methylation.":[57],"PathMethy":[58,110],"outperformed":[59],"seven":[60],"competing":[61],"methods":[62],"F1-score":[64],"across":[65],"nine":[66,76],"datasets":[68],"predicted":[70],"molecular":[73],"subtypes":[74],"within":[75],"tumor":[78],"types.":[79],"It":[80],"not":[81],"only":[82],"excelled":[83],"at":[84,149],"tracing":[85],"origins":[87],"both":[89],"but":[94],"also":[95],"demonstrated":[96],"high":[98],"degree":[99],"agreement":[101],"previously":[103],"diagnosed":[104],"sites":[105],"CUP.":[109],"provided":[111],"biological":[112,134],"insights":[113],"by":[114],"highlighting":[115],"key":[116],"categories,":[119],"their":[121],"interactions.":[122],"Using":[123],"we":[128],"gained":[129],"global":[131],"understanding":[132],"processes.":[135],"For":[136],"broader":[137],"access,":[138],"user-friendly":[140],"web":[141],"server":[142],"researchers":[144],"clinicians":[146],"available":[148],"https://cup.pathmethy.com.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
