{"id":"https://openalex.org/W4402900565","doi":"https://doi.org/10.1093/bib/bbae475","title":"Algorithm-agnostic significance testing in supervised learning with multimodal data","display_name":"Algorithm-agnostic significance testing in supervised learning with multimodal data","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4402900565","doi":"https://doi.org/10.1093/bib/bbae475","pmid":"https://pubmed.ncbi.nlm.nih.gov/39323092"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae475","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae475/59335609/bbae475.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae475/59335609/bbae475.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088648900","display_name":"Lucas Kook","orcid":"https://orcid.org/0000-0002-7546-7356"},"institutions":[{"id":"https://openalex.org/I102248843","display_name":"Vienna University of Economics and Business","ror":"https://ror.org/03yn8s215","country_code":"AT","type":"education","lineage":["https://openalex.org/I102248843"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Lucas Kook","raw_affiliation_strings":["Institute for Statistics and Mathematics, Vienna University of Economics and Business , Welthandelsplatz 1, AT-1020 Vienna ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Statistics and Mathematics, Vienna University of Economics and Business , Welthandelsplatz 1, AT-1020 Vienna ,","institution_ids":["https://openalex.org/I102248843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034145295","display_name":"Anton Rask Lundborg","orcid":"https://orcid.org/0000-0001-5565-5678"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Anton Rask Lundborg","raw_affiliation_strings":["Department of Mathematical Sciences, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematical Sciences, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen ,","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5088648900"],"corresponding_institution_ids":["https://openalex.org/I102248843"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.9603,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.87197044,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.436599999666214,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10136","display_name":"Statistical Methods and Inference","score":0.436599999666214,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.1145000010728836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.055799998342990875,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7581617832183838},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5904462337493896},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49636703729629517},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3442884087562561}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7581617832183838},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5904462337493896},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49636703729629517},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3442884087562561}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008113","descriptor_name":"Liver Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbae475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae475","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae475/59335609/bbae475.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39323092","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39323092","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:research.wu.ac.at:openaire/f666dae9-b507-42d4-bd3f-8c44291e378e","is_oa":true,"landing_page_url":"https://research.wu.ac.at/de/publications/f666dae9-b507-42d4-bd3f-8c44291e378e","pdf_url":null,"source":{"id":"https://openalex.org/S7407055123","display_name":"WU Research","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kook, L & Lundborg, A R 2024, 'Algorithm agnostic significance testing in supervised learning with multimodal data', Briefings in Bioinformatics, vol. 25, no. 6, bbae475. https://doi.org/10.1093/bib/bbae475","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11424510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11424510","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11424510/pdf/bbae475.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/38b23fcf-4971-4886-8f25-ee1506723a49","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/38b23fcf-4971-4886-8f25-ee1506723a49","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kook , L & Lundborg , A R 2024 , ' Algorithm-agnostic significance testing in supervised learning with multimodal data ' , Briefings in Bioinformatics , vol. 25 , no. 6 , bbae475 . https://doi.org/10.1093/bib/bbae475","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae475","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae475","pdf_url":"https://academic.oup.com/bib/article-pdf/25/6/bbae475/59335609/bbae475.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G299468233","display_name":null,"funder_award_id":"214457","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3077033437","display_name":null,"funder_award_id":"0069071","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402900565.pdf","grobid_xml":"https://content.openalex.org/works/W4402900565.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W2009462809","https://openalex.org/W2043398720","https://openalex.org/W2157395790","https://openalex.org/W2751886678","https://openalex.org/W2787894218","https://openalex.org/W2797510035","https://openalex.org/W2919115771","https://openalex.org/W2923919911","https://openalex.org/W2951209146","https://openalex.org/W2954499361","https://openalex.org/W2963371845","https://openalex.org/W2964132737","https://openalex.org/W2976374646","https://openalex.org/W2981798823","https://openalex.org/W2990138404","https://openalex.org/W2995225687","https://openalex.org/W3042860357","https://openalex.org/W3102027041","https://openalex.org/W3102311896","https://openalex.org/W3125755977","https://openalex.org/W3133824676","https://openalex.org/W3181637650","https://openalex.org/W3193996240","https://openalex.org/W3211857494","https://openalex.org/W3213558745","https://openalex.org/W4206042814","https://openalex.org/W4285413628","https://openalex.org/W4285794963","https://openalex.org/W4294534214","https://openalex.org/W4307652778","https://openalex.org/W4308245587","https://openalex.org/W4312072408","https://openalex.org/W4387097385","https://openalex.org/W4389817805","https://openalex.org/W4394659038","https://openalex.org/W4399650919","https://openalex.org/W4402043708","https://openalex.org/W4402561146","https://openalex.org/W4411392672","https://openalex.org/W6678041798","https://openalex.org/W6779272357","https://openalex.org/W6803667952","https://openalex.org/W6846398264","https://openalex.org/W6864221351"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"MOTIVATION:":[0],"Valid":[1],"statistical":[2],"inference":[3],"is":[4,195],"crucial":[5],"for":[6,37,99,108,167,191],"decision-making":[7],"but":[8],"difficult":[9],"to":[10,87,93],"obtain":[11],"in":[12,111,176,203],"supervised":[13,81],"learning":[14,82],"with":[15,77,115,122,136,153],"multimodal":[16,90,155],"data,":[17,24,117],"e.g.":[18],"combinations":[19],"of":[20,34,48,62,165],"clinical":[21,123],"features,":[22],"genomic":[23],"and":[25,70,118,125,163,183],"medical":[26,126],"images.":[27],"Multimodal":[28],"data":[29,91,156,200],"often":[30],"warrants":[31],"the":[32,46,60,161,177],"use":[33,47,61],"black-box":[35],"algorithms,":[36],"instance,":[38],"random":[39],"forests":[40],"or":[41],"neural":[42],"networks,":[43],"which":[44,67,143],"impede":[45],"traditional":[49],"variable":[50,96],"significance":[51,97,168],"tests.":[52],"RESULTS:":[53],"We":[54,84],"address":[55],"this":[56,204],"problem":[57],"by":[58],"proposing":[59],"COvariance":[63],"MEasure":[64],"Tests":[65],"(COMETs),":[66],"are":[68,174,206],"calibrated":[69],"powerful":[71],"tests":[72],"that":[73],"can":[74],"be":[75],"combined":[76],"any":[78],"sufficiently":[79],"predictive":[80],"algorithm.":[83],"apply":[85],"COMETs":[86,132,166,173],"several":[88],"high-dimensional,":[89],"sets":[92,201],"illustrate":[94],"(i)":[95],"testing":[98],"finding":[100],"relevant":[101],"mutations":[102],"modulating":[103],"drug-activity,":[104],"(ii)":[105],"modality":[106,120],"selection":[107,121],"predicting":[109],"survival":[110],"liver":[112],"cancer":[113],"patients":[114],"multiomics":[116],"(iii)":[119],"features":[124],"imaging":[127],"data.":[128],"In":[129],"all":[130,193],"applications,":[131],"yield":[133],"results":[134,159,194],"consistent":[135],"domain":[137],"knowledge":[138],"without":[139],"requiring":[140],"data-driven":[141],"pre-processing,":[142],"may":[144],"invalidate":[145],"type":[146],"I":[147],"error":[148],"control.":[149],"These":[150],"novel":[151],"applications":[152],"high-dimensional":[154],"corroborate":[157],"prior":[158],"on":[160,181,187],"power":[162],"robustness":[164],"testing.":[169],"AVAILABILITY":[170],"AND":[171],"IMPLEMENTATION:":[172],"implemented":[175],"cometsR":[178],"package":[179],"available":[180,186,196],"CRAN":[182],"pycometsPython":[184],"library":[185],"GitHub.":[188],"Source":[189],"code":[190],"reproducing":[192],"at":[197],"https://github.com/LucasKook/comets.":[198],"All":[199],"used":[202],"work":[205],"openly":[207],"available.":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
