{"id":"https://openalex.org/W4402791378","doi":"https://doi.org/10.1093/bib/bbae469","title":"Current computational tools for protein lysine acylation site prediction","display_name":"Current computational tools for protein lysine acylation site prediction","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4402791378","doi":"https://doi.org/10.1093/bib/bbae469","pmid":"https://pubmed.ncbi.nlm.nih.gov/39316944"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae469","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae469","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae469","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101687533","display_name":"Zhaohui Qin","orcid":"https://orcid.org/0000-0001-8490-5971"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaohui Qin","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":"https://orcid.org/0000-0001-8490-5971","affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100764056","display_name":"Haoran Ren","orcid":"https://orcid.org/0000-0001-5864-1183"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Ren","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024971176","display_name":"Pei Zhao","orcid":"https://orcid.org/0000-0002-6181-1777"},"institutions":[{"id":"https://openalex.org/I4210106793","display_name":"Cotton Research Institute","ror":"https://ror.org/01edrm178","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210106793","https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]},{"id":"https://openalex.org/I4210138501","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210138501","https://openalex.org/I4210151987"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pei Zhao","raw_affiliation_strings":["State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang 455000 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Sciences (CAAS) , Anyang 455000 ,","institution_ids":["https://openalex.org/I4210106793","https://openalex.org/I4210138501"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694890","display_name":"Kaiyuan Wang","orcid":"https://orcid.org/0009-0001-5375-3757"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaiyuan Wang","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100641505","display_name":"Huixia Liu","orcid":"https://orcid.org/0000-0001-9280-0096"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huixia Liu","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004318590","display_name":"Chunbo Miao","orcid":"https://orcid.org/0000-0003-3673-1879"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunbo Miao","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083503772","display_name":"Yanxiu Du","orcid":"https://orcid.org/0000-0001-9929-2100"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanxiu Du","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052624285","display_name":"Junzhou Li","orcid":"https://orcid.org/0009-0009-1172-370X"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junzhou Li","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024085472","display_name":"Liuji Wu","orcid":"https://orcid.org/0000-0002-0653-2193"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liuji Wu","raw_affiliation_strings":["Henan Agricultural University , College of Agronomy, , Zhengzhou 450046 ,","National Key Laboratory of Wheat and Maize Crop Science , College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henan Agricultural University , College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"National Key Laboratory of Wheat and Maize Crop Science , College of Agronomy, , Zhengzhou 450046 ,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013433350","display_name":"Zhen Chen","orcid":"https://orcid.org/0000-0002-9412-9774"},"institutions":[{"id":"https://openalex.org/I4750791","display_name":"Henan Agricultural University","ror":"https://ror.org/04eq83d71","country_code":"CN","type":"education","lineage":["https://openalex.org/I4750791"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Chen","raw_affiliation_strings":["Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,"],"raw_orcid":"https://orcid.org/0000-0002-9412-9774","affiliations":[{"raw_affiliation_string":"Collaborative Innovation Center of Henan Grain Crops , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]},{"raw_affiliation_string":"Henan Agricultural University , Henan Key Laboratory of Rice Molecular Breeding and High Efficiency Production, College of Agronomy, , Zhengzhou 450046 ,","institution_ids":["https://openalex.org/I4750791"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.6654,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.84056255,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6820246577262878},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5337928533554077},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5198488831520081},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4968748390674591},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.48507562279701233},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4103558659553528},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40023553371429443},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37963753938674927},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36407536268234253},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2121717631816864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17243680357933044},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08025255799293518},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0752137303352356}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6820246577262878},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5337928533554077},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5198488831520081},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4968748390674591},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.48507562279701233},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4103558659553528},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40023553371429443},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37963753938674927},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36407536268234253},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2121717631816864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17243680357933044},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08025255799293518},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0752137303352356},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000215","descriptor_name":"Acylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae469","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae469","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39316944","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39316944","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:11265353","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11421846","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11421846/pdf/bbae469.pdf","source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11421846","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11421846/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae469","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae469","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1904068096","display_name":null,"funder_award_id":"32170677","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3830842273","display_name":null,"funder_award_id":"232300421156","funder_id":"https://openalex.org/F4320323845","funder_display_name":"Natural Science Foundation of Henan Province"},{"id":"https://openalex.org/G7352144047","display_name":null,"funder_award_id":"3210151198","funder_id":"https://openalex.org/F4320331088","funder_display_name":"Natural Science Foundation for Young Scientists of Shanxi Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323845","display_name":"Natural Science Foundation of Henan Province","ror":null},{"id":"https://openalex.org/F4320331088","display_name":"Natural Science Foundation for Young Scientists of Shanxi Province","ror":null},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":169,"referenced_works":["https://openalex.org/W1969899640","https://openalex.org/W1999118478","https://openalex.org/W1999952815","https://openalex.org/W2014731953","https://openalex.org/W2029903254","https://openalex.org/W2037877475","https://openalex.org/W2038681300","https://openalex.org/W2043274355","https://openalex.org/W2044731117","https://openalex.org/W2046301798","https://openalex.org/W2055397908","https://openalex.org/W2059971420","https://openalex.org/W2064712921","https://openalex.org/W2069217708","https://openalex.org/W2078964925","https://openalex.org/W2082106887","https://openalex.org/W2084246818","https://openalex.org/W2087158205","https://openalex.org/W2088511656","https://openalex.org/W2095926488","https://openalex.org/W2101876702","https://openalex.org/W2102621836","https://openalex.org/W2104813013","https://openalex.org/W2106413110","https://openalex.org/W2115862579","https://openalex.org/W2116062594","https://openalex.org/W2117514345","https://openalex.org/W2117897510","https://openalex.org/W2124052876","https://openalex.org/W2124779485","https://openalex.org/W2129137060","https://openalex.org/W2150271494","https://openalex.org/W2151984950","https://openalex.org/W2152800101","https://openalex.org/W2154139219","https://openalex.org/W2158266834","https://openalex.org/W2158577092","https://openalex.org/W2158797467","https://openalex.org/W2159199134","https://openalex.org/W2162002416","https://openalex.org/W2170747616","https://openalex.org/W2187089797","https://openalex.org/W2209329607","https://openalex.org/W2324591007","https://openalex.org/W2337350186","https://openalex.org/W2399634880","https://openalex.org/W2423772299","https://openalex.org/W2472513547","https://openalex.org/W2538445534","https://openalex.org/W2540642777","https://openalex.org/W2563212203","https://openalex.org/W2601860898","https://openalex.org/W2604275396","https://openalex.org/W2610582292","https://openalex.org/W2612690371","https://openalex.org/W2715319929","https://openalex.org/W2753709519","https://openalex.org/W2768826694","https://openalex.org/W2780557617","https://openalex.org/W2786672974","https://openalex.org/W2790664092","https://openalex.org/W2793168264","https://openalex.org/W2793697428","https://openalex.org/W2805952346","https://openalex.org/W2809468490","https://openalex.org/W2886279431","https://openalex.org/W2888353590","https://openalex.org/W2889068840","https://openalex.org/W2892748271","https://openalex.org/W2894836881","https://openalex.org/W2896457183","https://openalex.org/W2896899595","https://openalex.org/W2898960554","https://openalex.org/W2899002988","https://openalex.org/W2901164269","https://openalex.org/W2907707247","https://openalex.org/W2910654431","https://openalex.org/W2917461463","https://openalex.org/W2920338801","https://openalex.org/W2921079059","https://openalex.org/W2949528721","https://openalex.org/W2950336271","https://openalex.org/W2951781419","https://openalex.org/W2972223935","https://openalex.org/W2982216374","https://openalex.org/W2986404471","https://openalex.org/W2991059578","https://openalex.org/W2994464657","https://openalex.org/W2999829553","https://openalex.org/W3006419333","https://openalex.org/W3009557647","https://openalex.org/W3010697764","https://openalex.org/W3010877467","https://openalex.org/W3019266337","https://openalex.org/W3020440546","https://openalex.org/W3020537178","https://openalex.org/W3023305792","https://openalex.org/W3037403058","https://openalex.org/W3038215960","https://openalex.org/W3082590494","https://openalex.org/W3087184316","https://openalex.org/W3134163647","https://openalex.org/W3138998566","https://openalex.org/W3141691617","https://openalex.org/W3146944767","https://openalex.org/W3152110994","https://openalex.org/W3162632405","https://openalex.org/W3166142427","https://openalex.org/W3177500196","https://openalex.org/W3181979416","https://openalex.org/W3199417536","https://openalex.org/W3199474014","https://openalex.org/W3199970975","https://openalex.org/W3202924278","https://openalex.org/W3203741962","https://openalex.org/W3207838037","https://openalex.org/W3209094369","https://openalex.org/W3212684988","https://openalex.org/W3213184710","https://openalex.org/W4200175423","https://openalex.org/W4206751228","https://openalex.org/W4210590585","https://openalex.org/W4210810268","https://openalex.org/W4212774754","https://openalex.org/W4213345021","https://openalex.org/W4220685469","https://openalex.org/W4220742882","https://openalex.org/W4225460848","https://openalex.org/W4281665783","https://openalex.org/W4282961683","https://openalex.org/W4283071930","https://openalex.org/W4283584023","https://openalex.org/W4288066876","https://openalex.org/W4290989027","https://openalex.org/W4297256139","https://openalex.org/W4300861364","https://openalex.org/W4303645584","https://openalex.org/W4309506674","https://openalex.org/W4311761046","https://openalex.org/W4313334355","https://openalex.org/W4313340044","https://openalex.org/W4313454211","https://openalex.org/W4313529649","https://openalex.org/W4317388119","https://openalex.org/W4321015480","https://openalex.org/W4323348670","https://openalex.org/W4323349706","https://openalex.org/W4327550249","https://openalex.org/W4361001942","https://openalex.org/W4366163632","https://openalex.org/W4366823175","https://openalex.org/W4377011940","https://openalex.org/W4378474135","https://openalex.org/W4381547856","https://openalex.org/W4387767260","https://openalex.org/W4387937010","https://openalex.org/W4388036294","https://openalex.org/W4390100495","https://openalex.org/W4391057469","https://openalex.org/W4392796915","https://openalex.org/W4393154903","https://openalex.org/W4393237109","https://openalex.org/W4394931899","https://openalex.org/W4396809860","https://openalex.org/W6748816842","https://openalex.org/W6755207826","https://openalex.org/W6777287215","https://openalex.org/W6848513559","https://openalex.org/W6852722340"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W4361305867"],"abstract_inverted_index":{"As":[0],"a":[1,33,72,85,109],"main":[2],"subtype":[3],"of":[4,19,29,39,75,88,94,108,134,173],"post-translational":[5],"modification":[6],"(PTM),":[7],"protein":[8,135],"lysine":[9],"acylations":[10],"(PLAs)":[11],"play":[12],"crucial":[13],"roles":[14],"in":[15,24,77],"regulating":[16],"diverse":[17],"functions":[18],"proteins.":[20],"With":[21,53],"recent":[22],"advancements":[23],"proteomics":[25],"technology,":[26],"the":[27,62,106,132,143,150,171],"identification":[28],"PTM":[30],"is":[31,43,82],"becoming":[32],"data-rich":[34],"field.":[35],"A":[36],"large":[37],"amount":[38],"experimentally":[40],"verified":[41],"data":[42,113],"urgently":[44],"required":[45],"to":[46,141,181],"be":[47,58],"translated":[48],"into":[49],"valuable":[50],"biological":[51],"insights.":[52],"computational":[54],"approaches,":[55],"PLA":[56,79,89,95,157,161,175],"can":[57],"accurately":[59],"detected":[60],"across":[61],"whole":[63],"proteome,":[64],"even":[65],"for":[66,105,154],"organisms":[67],"with":[68],"small-scale":[69],"datasets.":[70],"Herein,":[71],"comprehensive":[73],"summary":[74],"166":[76],"silico":[78],"prediction":[80,151],"methods":[81,152],"presented,":[83],"including":[84,112],"single":[86],"type":[87],"site":[90],"and":[91,115,126,138,159,177],"multiple":[92],"types":[93],"sites.":[96,162],"This":[97],"recapitulation":[98],"covers":[99],"important":[100],"aspects":[101],"that":[102],"are":[103],"critical":[104],"development":[107,172],"robust":[110],"predictor,":[111],"collection":[114],"preparation,":[116],"sample":[117],"selection,":[118],"feature":[119],"representation,":[120],"classification":[121],"algorithm":[122],"design,":[123],"model":[124],"evaluation,":[125],"method":[127],"availability.":[128],"Notably,":[129],"we":[130],"discuss":[131],"application":[133],"language":[136],"models":[137],"transfer":[139],"learning":[140,145],"solve":[142],"small-sample":[144],"issue.":[146],"We":[147],"also":[148],"highlight":[149],"developed":[153],"functionally":[155],"relevant":[156],"sites":[158],"species/substrate/cell-type-specific":[160],"In":[163],"conclusion,":[164],"this":[165],"systematic":[166],"review":[167],"could":[168],"potentially":[169],"facilitate":[170],"novel":[174],"predictors":[176],"offer":[178],"useful":[179],"insights":[180],"researchers":[182],"from":[183],"various":[184],"disciplines.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":7}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
