{"id":"https://openalex.org/W4402747286","doi":"https://doi.org/10.1093/bib/bbae458","title":"Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1","display_name":"Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1","publication_year":2024,"publication_date":"2024-09-23","ids":{"openalex":"https://openalex.org/W4402747286","doi":"https://doi.org/10.1093/bib/bbae458","pmid":"https://pubmed.ncbi.nlm.nih.gov/39311700"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae458","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae458","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062730016","display_name":"Aliaa A. Ali","orcid":"https://orcid.org/0000-0003-2503-6854"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I16231767","display_name":"Turku University of Applied Sciences","ror":"https://ror.org/04s0yt949","country_code":"FI","type":"education","lineage":["https://openalex.org/I16231767"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Aliaa E Ali","raw_affiliation_strings":["InFLAMES Research Flagship, University of Turku , 20014 Turku,","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland"],"raw_orcid":"https://orcid.org/0000-0003-2503-6854","affiliations":[{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku,","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340048","display_name":"Lili Li","orcid":"https://orcid.org/0000-0002-0292-5889"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Li-Li Li","raw_affiliation_strings":["Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku,","University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku,","Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku, Finland","University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku,","institution_ids":["https://openalex.org/I4210140120","https://openalex.org/I183173800"]},{"raw_affiliation_string":"University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku,","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I130217899","https://openalex.org/I4210140120"]},{"raw_affiliation_string":"Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku, Finland","institution_ids":["https://openalex.org/I4210140120"]},{"raw_affiliation_string":"University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku, Finland","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961","https://openalex.org/I130217899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049640837","display_name":"Michael J. Courtney","orcid":"https://orcid.org/0000-0001-8693-3933"},"institutions":[{"id":"https://openalex.org/I130217899","display_name":"\u00c5bo Akademi University","ror":"https://ror.org/029pk6x14","country_code":"FI","type":"education","lineage":["https://openalex.org/I130217899"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]},{"id":"https://openalex.org/I4210140120","display_name":"Turku Centre for Biotechnology","ror":"https://ror.org/0421ba211","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210140120"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Michael J Courtney","raw_affiliation_strings":["Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku,","University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku,","University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku, Finland","Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku,","institution_ids":["https://openalex.org/I4210140120","https://openalex.org/I183173800"]},{"raw_affiliation_string":"University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku,","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I130217899","https://openalex.org/I4210140120"]},{"raw_affiliation_string":"University of Turku and \u00c5bo Akademi University , Turku Bioscience Centre, , Turku, Finland","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961","https://openalex.org/I130217899"]},{"raw_affiliation_string":"Neuronal Signalling Laboratory and Turku Screening Unit , Turku Bioscience Centre, , Turku, Finland","institution_ids":["https://openalex.org/I4210140120"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090456130","display_name":"Olli T. Pentik\u00e4inen","orcid":"https://orcid.org/0000-0001-7188-4016"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I16231767","display_name":"Turku University of Applied Sciences","ror":"https://ror.org/04s0yt949","country_code":"FI","type":"education","lineage":["https://openalex.org/I16231767"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Olli T Pentik\u00e4inen","raw_affiliation_strings":["InFLAMES Research Flagship, University of Turku , 20014 Turku,","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland","InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku,","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040690797","display_name":"Pekka A. Postila","orcid":"https://orcid.org/0000-0002-2947-7991"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I16231767","display_name":"Turku University of Applied Sciences","ror":"https://ror.org/04s0yt949","country_code":"FI","type":"education","lineage":["https://openalex.org/I16231767"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Pekka A Postila","raw_affiliation_strings":["InFLAMES Research Flagship, University of Turku , 20014 Turku,","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland","InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku,","institution_ids":["https://openalex.org/I155660961","https://openalex.org/I16231767"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku,","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"MedChem.fi, Institute of Biomedicine, Integrative Physiology and Pharmacology, University of Turku , FI-20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"InFLAMES Research Flagship, University of Turku , 20014 Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":3855,"currency":"EUR","value_usd":4157},"fwci":0.611,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.68159969,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/missense-mutation","display_name":"Missense mutation","score":0.9213773608207703},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.43065983057022095},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.429837167263031},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4002085328102112},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3717852532863617},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2791043519973755},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12014535069465637}],"concepts":[{"id":"https://openalex.org/C75563809","wikidata":"https://www.wikidata.org/wiki/Q2656896","display_name":"Missense mutation","level":4,"score":0.9213773608207703},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.43065983057022095},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.429837167263031},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4002085328102112},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3717852532863617},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2791043519973755},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12014535069465637}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020125","descriptor_name":"Mutation, Missense","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D020703","descriptor_name":"ras GTPase-Activating Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbae458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae458","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39311700","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39311700","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11418247","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11418247","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11418247/pdf/bbae458.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire/ad0a0819-d931-44f6-b440-c412d6b56a9e","is_oa":true,"landing_page_url":"https://research.abo.fi/en/publications/ad0a0819-d931-44f6-b440-c412d6b56a9e","pdf_url":"https://research.abo.fi/ws/files/65648163/bbae458.pdf","source":{"id":"https://openalex.org/S4406923060","display_name":"\u00c5bo Akademi University Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ali, A E, Li, L-L, Courtney, M J, Pentikainen, O T & Postila, P A 2024, 'Atomistic simulations reveal impacts of missense mutations on the structure and function of SynGAP1', Briefings in Bioinformatics, vol. 25, no. 6, bbae458. https://doi.org/10.1093/bib/bbae458","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.utupub.fi:10024/196946","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/196946","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bib/bbae458","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae458","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3699851870","display_name":null,"funder_award_id":"NNF22OC0075825","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G4865681992","display_name":null,"funder_award_id":"NNF21OC0068926","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"}],"funders":[{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":135,"referenced_works":["https://openalex.org/W30218150","https://openalex.org/W47364165","https://openalex.org/W255996521","https://openalex.org/W1031578623","https://openalex.org/W1482207933","https://openalex.org/W1482444532","https://openalex.org/W1546896179","https://openalex.org/W1921449796","https://openalex.org/W1970161309","https://openalex.org/W1973897761","https://openalex.org/W1975160400","https://openalex.org/W1979856142","https://openalex.org/W1982511753","https://openalex.org/W1985318238","https://openalex.org/W1989879415","https://openalex.org/W1990939702","https://openalex.org/W1992864103","https://openalex.org/W1993505652","https://openalex.org/W1999648327","https://openalex.org/W2000460129","https://openalex.org/W2000487621","https://openalex.org/W2001443734","https://openalex.org/W2003625629","https://openalex.org/W2005322562","https://openalex.org/W2005494249","https://openalex.org/W2008280409","https://openalex.org/W2012678641","https://openalex.org/W2018623138","https://openalex.org/W2022174722","https://openalex.org/W2023100445","https://openalex.org/W2023490488","https://openalex.org/W2023570403","https://openalex.org/W2029667189","https://openalex.org/W2029903626","https://openalex.org/W2038027636","https://openalex.org/W2043967644","https://openalex.org/W2047510784","https://openalex.org/W2056214445","https://openalex.org/W2057646632","https://openalex.org/W2064291650","https://openalex.org/W2065283382","https://openalex.org/W2066690664","https://openalex.org/W2074727774","https://openalex.org/W2074987948","https://openalex.org/W2079492386","https://openalex.org/W2082905404","https://openalex.org/W2086164560","https://openalex.org/W2086586417","https://openalex.org/W2089863534","https://openalex.org/W2097775366","https://openalex.org/W2109301107","https://openalex.org/W2118056979","https://openalex.org/W2125872855","https://openalex.org/W2129551670","https://openalex.org/W2130479394","https://openalex.org/W2131052727","https://openalex.org/W2132262459","https://openalex.org/W2135878161","https://openalex.org/W2136008443","https://openalex.org/W2136162554","https://openalex.org/W2138033133","https://openalex.org/W2145428487","https://openalex.org/W2148830266","https://openalex.org/W2153457180","https://openalex.org/W2153460618","https://openalex.org/W2153618618","https://openalex.org/W2159236822","https://openalex.org/W2163104155","https://openalex.org/W2279702079","https://openalex.org/W2287845977","https://openalex.org/W2293034743","https://openalex.org/W2471220893","https://openalex.org/W2475393252","https://openalex.org/W2509111410","https://openalex.org/W2509677031","https://openalex.org/W2527524217","https://openalex.org/W2538176089","https://openalex.org/W2555829444","https://openalex.org/W2606439133","https://openalex.org/W2743616226","https://openalex.org/W2749454133","https://openalex.org/W2770026599","https://openalex.org/W2783855936","https://openalex.org/W2786274579","https://openalex.org/W2788217325","https://openalex.org/W2884633214","https://openalex.org/W2891410819","https://openalex.org/W2898757824","https://openalex.org/W2904696555","https://openalex.org/W2944245644","https://openalex.org/W2952900264","https://openalex.org/W2969566072","https://openalex.org/W2976140698","https://openalex.org/W2979333736","https://openalex.org/W2987764106","https://openalex.org/W2989052455","https://openalex.org/W3007964422","https://openalex.org/W3011901057","https://openalex.org/W3032034316","https://openalex.org/W3082256611","https://openalex.org/W3092344367","https://openalex.org/W3093472495","https://openalex.org/W3094624584","https://openalex.org/W3101603399","https://openalex.org/W3105643282","https://openalex.org/W3111481811","https://openalex.org/W3113869639","https://openalex.org/W3159719254","https://openalex.org/W3164515275","https://openalex.org/W3177828909","https://openalex.org/W3179412555","https://openalex.org/W4239985672","https://openalex.org/W4255746982","https://openalex.org/W4256274906","https://openalex.org/W4283262503","https://openalex.org/W4301430980","https://openalex.org/W4307571627","https://openalex.org/W4308450127","https://openalex.org/W4310645193","https://openalex.org/W4313332815","https://openalex.org/W4320178935","https://openalex.org/W4386861232","https://openalex.org/W4387440676","https://openalex.org/W4388609875","https://openalex.org/W4388892785","https://openalex.org/W4389141292","https://openalex.org/W4392192276","https://openalex.org/W4392282691","https://openalex.org/W4392727902","https://openalex.org/W4394591957","https://openalex.org/W4394909527","https://openalex.org/W6664947879","https://openalex.org/W6682747124","https://openalex.org/W6782367363","https://openalex.org/W6864815874"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W3004443428","https://openalex.org/W4361004911","https://openalex.org/W2625862723","https://openalex.org/W1971719088","https://openalex.org/W2612068534","https://openalex.org/W2069150591","https://openalex.org/W4232163425","https://openalex.org/W2146849562","https://openalex.org/W2028961943"],"abstract_inverted_index":{"De":[0],"novo":[1],"mutations":[2,48,88,99,113,145],"in":[3,25,36,55,131],"the":[4,62,66,84,90,98,101,127,136,141,156,165],"synaptic":[5],"GTPase":[6],"activating":[7],"protein":[8,91],"(SynGAP)":[9],"are":[10,33,44,50],"associated":[11],"with":[12,133],"neurological":[13],"disorders":[14],"like":[15],"intellectual":[16],"disability,":[17],"epilepsy,":[18],"and":[19,28,163],"autism.":[20],"SynGAP":[21,70,160],"is":[22],"also":[23,105],"implicated":[24],"Alzheimer's":[26],"disease":[27],"cancer.":[29],"Although":[30],"pathogenic":[31,118],"variants":[32,162],"highly":[34],"penetrant":[35],"neurodevelopmental":[37],"conditions,":[38],"a":[39],"substantial":[40],"number":[41],"of":[42,69,86,97,144,159],"them":[43],"caused":[45],"by":[46],"missense":[47,63,87,161],"that":[49],"difficult":[51],"to":[52,155],"diagnose.":[53],"Hence,":[54],"silico":[56],"mutagenesis":[57],"was":[58,93,104],"performed":[59],"for":[60,81,167],"probing":[61],"effects":[64,143],"within":[65],"N-terminal":[67],"region":[68],"structure.":[71],"Through":[72],"extensive":[73],"molecular":[74],"dynamics":[75],"simulations,":[76],"encompassing":[77],"three":[78],"150-ns":[79],"replicates":[80],"211":[82],"variants,":[83],"impact":[85],"on":[89,100,122,146],"fold":[92],"assessed.":[94],"The":[95,112],"effect":[96],"folding":[102],"stability":[103],"quantitatively":[106],"assessed":[107],"using":[108],"free":[109],"energy":[110],"calculations.":[111],"were":[114],"categorized":[115],"as":[116],"potentially":[117],"or":[119],"benign":[120],"based":[121],"their":[123],"structural":[124,153],"impacts.":[125],"Finally,":[126],"study":[128,151],"introduces":[129],"wild-type-SynGAP":[130],"complex":[132],"RasGTPase":[134],"at":[135],"inner":[137],"membrane,":[138],"while":[139],"considering":[140],"potential":[142],"these":[147],"key":[148],"interactions.":[149],"This":[150],"provides":[152],"perspective":[154],"clinical":[157],"assessment":[158],"lays":[164],"foundation":[166],"future":[168],"structure-based":[169],"drug":[170],"discovery.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
