{"id":"https://openalex.org/W4402590036","doi":"https://doi.org/10.1093/bib/bbae452","title":"GeneRaMeN enables integration, comparison, and meta-analysis of multiple ranked gene lists to identify consensus, unique, and correlated genes","display_name":"GeneRaMeN enables integration, comparison, and meta-analysis of multiple ranked gene lists to identify consensus, unique, and correlated genes","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4402590036","doi":"https://doi.org/10.1093/bib/bbae452","pmid":"https://pubmed.ncbi.nlm.nih.gov/39293806"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae452","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae452","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae452/59182293/bbae452.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae452/59182293/bbae452.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077873352","display_name":"Meisam Yousefi","orcid":"https://orcid.org/0000-0002-7346-803X"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Meisam Yousefi","raw_affiliation_strings":["Centre for Computational Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":"https://orcid.org/0000-0002-7346-803X","affiliations":[{"raw_affiliation_string":"Centre for Computational Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]},{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054296788","display_name":"W. See","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wayne Ren See","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077585791","display_name":"Kam Leng Aw\u2010Yong","orcid":"https://orcid.org/0000-0002-6418-7287"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kam Leng Aw-Yong","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004480322","display_name":"Wai Suet Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wai Suet Lee","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000811332","display_name":"Cythia Lingli Yong","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Cythia Lingli Yong","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032147384","display_name":"Felic Fanusi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Felic Fanusi","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038609342","display_name":"Gavin J. D. Smith","orcid":"https://orcid.org/0000-0001-5031-468X"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Gavin J D Smith","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041001904","display_name":"Eng Eong Ooi","orcid":"https://orcid.org/0000-0002-0520-1544"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Eng Eong Ooi","raw_affiliation_strings":["Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100735520","display_name":"Shang Li","orcid":"https://orcid.org/0000-0002-6226-3362"},"institutions":[{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Shang Li","raw_affiliation_strings":["Program in Cancer and Stem Cell Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Cancer and Stem Cell Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078766702","display_name":"Sujoy Ghosh","orcid":"https://orcid.org/0000-0002-7601-165X"},"institutions":[{"id":"https://openalex.org/I103990859","display_name":"Pennington Biomedical Research Center","ror":"https://ror.org/040cnym54","country_code":"US","type":"facility","lineage":["https://openalex.org/I103990859"]},{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG","US"],"is_corresponding":false,"raw_author_name":"Sujoy Ghosh","raw_affiliation_strings":["Centre for Computational Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","Laboratory of Computational Biology, Pennington Biomedical Research Center , 6400 Perkins Road, Baton Rouge, LA 70808, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Biology, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]},{"raw_affiliation_string":"Laboratory of Computational Biology, Pennington Biomedical Research Center , 6400 Perkins Road, Baton Rouge, LA 70808, United States","institution_ids":["https://openalex.org/I103990859"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087299955","display_name":"Yaw Shin Ooi","orcid":"https://orcid.org/0000-0001-9014-1365"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210126319","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596","https://openalex.org/I170897317","https://openalex.org/I4210126319"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yaw Shin Ooi","raw_affiliation_strings":["A*STAR Infectious Diseases Laboratories (ID Labs) , Agency for Science and Technology Research (A*STAR), 8A Biomedical Grove, #05-13 Immunos, Singapore 138648, Singapore","Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore"],"raw_orcid":"https://orcid.org/0000-0001-9014-1365","affiliations":[{"raw_affiliation_string":"A*STAR Infectious Diseases Laboratories (ID Labs) , Agency for Science and Technology Research (A*STAR), 8A Biomedical Grove, #05-13 Immunos, Singapore 138648, Singapore","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Program in Emerging Infectious Diseases, Duke-NUS Medical School , 8 College Road, Singapore 169857, Singapore","institution_ids":["https://openalex.org/I4210126319"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5077873352"],"corresponding_institution_ids":["https://openalex.org/I4210126319"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.0335,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.76203155,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.66414475440979},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5464076995849609},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4897444248199463},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4570302367210388},{"id":"https://openalex.org/keywords/meta-analysis","display_name":"Meta-analysis","score":0.42210936546325684},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36824727058410645},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11304795742034912}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.66414475440979},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5464076995849609},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4897444248199463},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4570302367210388},{"id":"https://openalex.org/C95190672","wikidata":"https://www.wikidata.org/wiki/Q815382","display_name":"Meta-analysis","level":2,"score":0.42210936546325684},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36824727058410645},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11304795742034912},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005820","descriptor_name":"Genetic Testing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae452","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae452","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae452/59182293/bbae452.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39293806","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39293806","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11410378","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11410378","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11410378/pdf/bbae452.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:repository.lsu.edu:pbrc_basic_science_pubs-1082","is_oa":true,"landing_page_url":"https://repository.lsu.edu/pbrc_basic_science_pubs/83","pdf_url":null,"source":{"id":"https://openalex.org/S4210169993","display_name":"Civil War Book Review","issn_l":"1528-6592","issn":["1528-6592"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310315936","host_organization_name":"Louisiana State University","host_organization_lineage":["https://openalex.org/P4310315936"],"host_organization_lineage_names":["Louisiana State University"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Division of Basic Science Faculty Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae452","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae452","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae452/59182293/bbae452.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2141554816","display_name":null,"funder_award_id":"MOE-T2EP30123-0008","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G2203939374","display_name":null,"funder_award_id":"Duke/Duke-NUS/RECA(Pilot)/2019/0047","funder_id":"https://openalex.org/F4320316262","funder_display_name":"Duke-NUS Medical School"},{"id":"https://openalex.org/G3504039998","display_name":null,"funder_award_id":"MOH-000928","funder_id":"https://openalex.org/F4320320709","funder_display_name":"National Research Foundation Singapore"},{"id":"https://openalex.org/G5694591956","display_name":null,"funder_award_id":"NIGMS 2U54GM104940","funder_id":"https://openalex.org/F4320317903","funder_display_name":"Louisiana Clinical and Translational Science Center"},{"id":"https://openalex.org/G608089777","display_name":null,"funder_award_id":"MOE-000095-01","funder_id":"https://openalex.org/F4320320751","funder_display_name":"Ministry of Education - Singapore"},{"id":"https://openalex.org/G8247065809","display_name":null,"funder_award_id":"NRF-MOST Joint Grant MOH-000928","funder_id":"https://openalex.org/F4320320709","funder_display_name":"National Research Foundation Singapore"}],"funders":[{"id":"https://openalex.org/F4320316262","display_name":"Duke-NUS Medical School","ror":"https://ror.org/02j1m6098"},{"id":"https://openalex.org/F4320317903","display_name":"Louisiana Clinical and Translational Science Center","ror":null},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320709","display_name":"National Research Foundation Singapore","ror":"https://ror.org/03cpyc314"},{"id":"https://openalex.org/F4320320751","display_name":"Ministry of Education - Singapore","ror":"https://ror.org/01kcva023"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402590036.pdf"},"referenced_works_count":90,"referenced_works":["https://openalex.org/W1635615463","https://openalex.org/W1967137553","https://openalex.org/W1977911898","https://openalex.org/W1992782604","https://openalex.org/W2001471954","https://openalex.org/W2004721639","https://openalex.org/W2009705209","https://openalex.org/W2027518730","https://openalex.org/W2030112489","https://openalex.org/W2035421116","https://openalex.org/W2053086049","https://openalex.org/W2056242601","https://openalex.org/W2060449331","https://openalex.org/W2071402683","https://openalex.org/W2098282574","https://openalex.org/W2098687402","https://openalex.org/W2100122648","https://openalex.org/W2114256922","https://openalex.org/W2118560982","https://openalex.org/W2146511318","https://openalex.org/W2147463516","https://openalex.org/W2162446773","https://openalex.org/W2334877168","https://openalex.org/W2426204902","https://openalex.org/W2439020788","https://openalex.org/W2464834014","https://openalex.org/W2597646117","https://openalex.org/W2606737810","https://openalex.org/W2741508285","https://openalex.org/W2755507863","https://openalex.org/W2773284654","https://openalex.org/W2797693786","https://openalex.org/W2895908547","https://openalex.org/W2904824676","https://openalex.org/W2909920902","https://openalex.org/W2912436263","https://openalex.org/W2916272011","https://openalex.org/W2936686072","https://openalex.org/W2941755333","https://openalex.org/W2944345771","https://openalex.org/W2953131670","https://openalex.org/W2965607935","https://openalex.org/W2973127185","https://openalex.org/W2974855504","https://openalex.org/W2999148418","https://openalex.org/W3000124759","https://openalex.org/W3002939325","https://openalex.org/W3023251337","https://openalex.org/W3024974412","https://openalex.org/W3042896257","https://openalex.org/W3090108357","https://openalex.org/W3093900830","https://openalex.org/W3094597057","https://openalex.org/W3110976643","https://openalex.org/W3111836713","https://openalex.org/W3113360200","https://openalex.org/W3128335178","https://openalex.org/W3133576771","https://openalex.org/W3134574901","https://openalex.org/W3134627077","https://openalex.org/W3162918061","https://openalex.org/W3165843194","https://openalex.org/W3180937600","https://openalex.org/W3186416146","https://openalex.org/W3195129687","https://openalex.org/W3206811245","https://openalex.org/W3208706270","https://openalex.org/W3214112664","https://openalex.org/W4210513352","https://openalex.org/W4211123163","https://openalex.org/W4221065624","https://openalex.org/W4224937204","https://openalex.org/W4225699259","https://openalex.org/W4287510130","https://openalex.org/W4287510152","https://openalex.org/W4290667509","https://openalex.org/W4296788170","https://openalex.org/W4306964937","https://openalex.org/W4310127483","https://openalex.org/W4311380663","https://openalex.org/W4315631380","https://openalex.org/W4316591918","https://openalex.org/W4380537710","https://openalex.org/W4383371806","https://openalex.org/W4383533212","https://openalex.org/W4386492894","https://openalex.org/W4387729211","https://openalex.org/W4389799488","https://openalex.org/W4390877182","https://openalex.org/W6681741145"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"High-throughput":[0],"experiments":[1],"often":[2],"produce":[3],"ranked":[4,33],"gene":[5,34],"outputs,":[6],"with":[7,197],"forward":[8],"genetic":[9,93,241],"screening":[10,94,122,130,203,242],"being":[11],"a":[12,106,161,198],"notable":[13],"example.":[14],"While":[15],"there":[16],"are":[17],"various":[18],"tools":[19],"for":[20,167,227],"analyzing":[21],"individual":[22],"datasets,":[23,95,191,243],"those":[24],"that":[25],"perform":[26],"comparative":[27],"and":[28,60,79,90,100,189,236],"meta-analytical":[29],"examination":[30],"of":[31,57,109,117,136,201,240],"such":[32],"lists":[35],"remain":[36],"scarce.":[37],"Here,":[38],"we":[39,86,183],"introduce":[40],"Gene":[41],"Rank":[42],"Meta":[43],"Analyzer":[44],"(GeneRaMeN),":[45],"an":[46,231],"R":[47],"Shiny":[48],"tool":[49,233],"utilizing":[50],"rank":[51],"statistics":[52],"to":[53,73,147,222,234],"facilitate":[54],"the":[55,114,133,145,176,202,238],"identification":[56],"consensus,":[58],"unique,":[59],"correlated":[61],"genes":[62],"across":[63],"multiple":[64],"hit":[65],"lists.":[66],"We":[67],"focused":[68],"on":[69,121,126,209],"two":[70],"key":[71],"topics":[72],"showcase":[74],"GeneRaMeN:":[75],"virus":[76,146],"host":[77,111,168,193],"factors":[78,169,194],"cancer":[80,220,225],"dependencies.":[81],"Using":[82],"GeneRaMeN":[83],"'Rank":[84,158,181],"Aggregation',":[85],"integrated":[87],"24":[88],"published":[89],"new":[91],"flavivirus":[92,110],"including":[96],"dengue,":[97],"Japanese":[98],"encephalitis,":[99],"Zika":[101],"viruses.":[102],"This":[103],"meta-analysis":[104,137],"yielded":[105],"consensus":[107],"list":[108],"factors,":[112],"elucidating":[113],"significant":[115],"influence":[116],"cell":[118],"line":[119],"selection":[120],"outcomes.":[123],"Similar":[124,205],"analysis":[125],"13":[127],"SARS-CoV-2":[128,190],"CRISPR":[129],"datasets":[131,216],"highlighted":[132],"pivotal":[134],"role":[135],"in":[138,171],"revealing":[139],"redundant":[140],"biological":[141],"pathways":[142],"exploited":[143],"by":[144],"enter":[148],"human":[149,185,219],"cells.":[150],"Such":[151],"redundancy":[152],"was":[153,165],"further":[154],"underscored":[155],"using":[156],"GeneRaMeN's":[157,180],"Correlation',":[159],"where":[160],"strong":[162],"negative":[163],"correlation":[164],"observed":[166],"implicated":[170],"one":[172],"entry":[173],"pathway":[174],"versus":[175],"alternate":[177],"route.":[178],"Utilizing":[179],"Uniqueness',":[182],"analyzed":[184],"coronaviruses":[186],"229E,":[187],"OC43,":[188],"identifying":[192],"uniquely":[195],"associated":[196],"defined":[199],"subset":[200],"datasets.":[204],"analyses":[206],"were":[207],"performed":[208],"over":[210],"1000":[211],"Cancer":[212],"Dependency":[213],"Map":[214],"(DepMap)":[215],"spanning":[217],"19":[218],"types":[221],"reveal":[223],"unique":[224],"vulnerabilities":[226],"each":[228],"organ/tissue.":[229],"GeneRaMeN,":[230],"efficient":[232],"integrate":[235],"maximize":[237],"usability":[239],"is":[244],"freely":[245],"accessible":[246],"via":[247],"https://ysolab.shinyapps.io/GeneRaMeN.":[248]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
