{"id":"https://openalex.org/W4402466356","doi":"https://doi.org/10.1093/bib/bbae443","title":"Global-local aware Heterogeneous Graph Contrastive Learning for multifaceted association prediction in miRNA\u2013gene\u2013disease networks","display_name":"Global-local aware Heterogeneous Graph Contrastive Learning for multifaceted association prediction in miRNA\u2013gene\u2013disease networks","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4402466356","doi":"https://doi.org/10.1093/bib/bbae443","pmid":"https://pubmed.ncbi.nlm.nih.gov/39256197"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae443","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae443/59073989/bbae443.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae443/59073989/bbae443.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030102238","display_name":"Yuxuan Si","orcid":"https://orcid.org/0000-0003-2828-5231"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxuan Si","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China"],"raw_orcid":"https://orcid.org/0000-0003-2828-5231","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China","institution_ids":["https://openalex.org/I2802390878","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101314901","display_name":"Zihan Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zihan Huang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054512186","display_name":"Zhengqing Fang","orcid":"https://orcid.org/0000-0003-3270-0952"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengqing Fang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China","institution_ids":["https://openalex.org/I2802390878","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113379229","display_name":"Zhouhang Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhouhang Yuan","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China","institution_ids":["https://openalex.org/I2802390878","https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056505424","display_name":"Zhengxing Huang","orcid":"https://orcid.org/0000-0002-2644-8642"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengxing Huang","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101465136","display_name":"Yingming Li","orcid":"https://orcid.org/0000-0001-6859-9038"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingming Li","raw_affiliation_strings":["College of Information Science and Electronic Engineering, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Electronic Engineering, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024330462","display_name":"Ying Wei","orcid":"https://orcid.org/0000-0003-0915-5378"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Wei","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004882141","display_name":"Fei Wu","orcid":"https://orcid.org/0000-0003-2139-8807"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Wu","raw_affiliation_strings":["College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Zhejiang University , 38 Zheda Road, 310027 Zhejiang, China","institution_ids":["https://openalex.org/I168879160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101966833","display_name":"Yu\u2010Feng Yao","orcid":"https://orcid.org/0000-0001-5699-3388"},"institutions":[{"id":"https://openalex.org/I2802390878","display_name":"Sir Run Run Shaw Hospital","ror":"https://ror.org/00ka6rp58","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I2802390878"]},{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]},{"id":"https://openalex.org/I4392738115","display_name":"The Fourth Affiliated Hospital of Soochow University (Suzhou Dushu Lake Hospital)","ror":"https://ror.org/04n3e7v86","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4392738115"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-Feng Yao","raw_affiliation_strings":["Department of Ophthalmology , The Fourth Affiliated Hospital of Soochow University, 215000 Suzhou, China","Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ophthalmology , The Fourth Affiliated Hospital of Soochow University, 215000 Suzhou, China","institution_ids":["https://openalex.org/I3923682","https://openalex.org/I4392738115"]},{"raw_affiliation_string":"Department of Ophthalmology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine , East Qingchun Road, 310016 Zhejiang, China","institution_ids":["https://openalex.org/I2802390878","https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.4142,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.82441355,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7350634932518005},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5592390298843384},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.48561444878578186},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4773257374763489},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.4212060570716858},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4200056791305542},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41840308904647827},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.27056342363357544},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.25828543305397034},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1901549994945526},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1535014510154724}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7350634932518005},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5592390298843384},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.48561444878578186},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4773257374763489},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.4212060570716858},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4200056791305542},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41840308904647827},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27056342363357544},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.25828543305397034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1901549994945526},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1535014510154724},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae443","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae443/59073989/bbae443.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39256197","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39256197","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11387071","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11387071","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11387071/pdf/bbae443.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae443","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae443/59073989/bbae443.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G4385699040","display_name":null,"funder_award_id":"U20A20387","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8139305836","display_name":null,"funder_award_id":"2023YFE0204200","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402466356.pdf","grobid_xml":"https://content.openalex.org/works/W4402466356.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1989277387","https://openalex.org/W2016106370","https://openalex.org/W2023381648","https://openalex.org/W2031345305","https://openalex.org/W2047529648","https://openalex.org/W2051738582","https://openalex.org/W2053039860","https://openalex.org/W2074695498","https://openalex.org/W2080551186","https://openalex.org/W2090891622","https://openalex.org/W2091961739","https://openalex.org/W2103151642","https://openalex.org/W2118814218","https://openalex.org/W2125983095","https://openalex.org/W2135836598","https://openalex.org/W2145894824","https://openalex.org/W2154851992","https://openalex.org/W2158135353","https://openalex.org/W2300551961","https://openalex.org/W2393319904","https://openalex.org/W2537679995","https://openalex.org/W2572986783","https://openalex.org/W2765683665","https://openalex.org/W2888754375","https://openalex.org/W2890210261","https://openalex.org/W2890590258","https://openalex.org/W2949066452","https://openalex.org/W2950834624","https://openalex.org/W2954361737","https://openalex.org/W2964051675","https://openalex.org/W2969845879","https://openalex.org/W2979745489","https://openalex.org/W3000082418","https://openalex.org/W3005261876","https://openalex.org/W3010678464","https://openalex.org/W3092790415","https://openalex.org/W3093996932","https://openalex.org/W3094605801","https://openalex.org/W3104097132","https://openalex.org/W3116524082","https://openalex.org/W3128027065","https://openalex.org/W3153325943","https://openalex.org/W3165614405","https://openalex.org/W3170782891","https://openalex.org/W3172710079","https://openalex.org/W3192421672","https://openalex.org/W4200043367","https://openalex.org/W4210535201","https://openalex.org/W4210548518","https://openalex.org/W4211064852","https://openalex.org/W4225752318","https://openalex.org/W4233698560","https://openalex.org/W4246271082","https://openalex.org/W4281553978","https://openalex.org/W4306921863","https://openalex.org/W4323974793","https://openalex.org/W4379768521","https://openalex.org/W4385157000","https://openalex.org/W4385475774","https://openalex.org/W4388870164","https://openalex.org/W4390706181","https://openalex.org/W4391005914","https://openalex.org/W6682948231","https://openalex.org/W6726873649","https://openalex.org/W6755019991","https://openalex.org/W6783990618","https://openalex.org/W6784406891","https://openalex.org/W6936242187"],"related_works":["https://openalex.org/W2770593030","https://openalex.org/W3154990682","https://openalex.org/W2560201613","https://openalex.org/W2171975302","https://openalex.org/W2022352247","https://openalex.org/W4312219546","https://openalex.org/W2377538627","https://openalex.org/W2107220315","https://openalex.org/W1589637664","https://openalex.org/W4285218279"],"abstract_inverted_index":{"Unraveling":[0],"the":[1,140,149,161,190,237],"intricate":[2],"network":[3],"of":[4,44,80,107,151,160,192],"associations":[5,54,61,89,228],"among":[6,229],"microRNAs":[7],"(miRNAs),":[8],"genes,":[9,231],"and":[10,21,59,93,99,131,164,188,208,217,232,239],"diseases":[11],"is":[12],"pivotal":[13],"for":[14,70],"deciphering":[15],"molecular":[16],"mechanisms,":[17],"refining":[18],"disease":[19],"diagnosis,":[20],"crafting":[22],"targeted":[23],"therapies.":[24],"Computational":[25],"strategies,":[26],"leveraging":[27,185],"link":[28],"prediction":[29,73,106],"within":[30],"biological":[31],"graphs,":[32],"present":[33],"a":[34,63,97,117],"cost-efficient":[35],"alternative":[36],"to":[37,86,135,201,224],"high-cost":[38],"empirical":[39],"assays.":[40],"However,":[41],"while":[42],"plenty":[43],"methods":[45],"excel":[46],"at":[47,244],"predicting":[48],"specific":[49],"associations,":[50],"such":[51,204],"as":[52,83,205],"miRNA-disease":[53],"(MDAs),":[55],"miRNA-target":[56],"interactions":[57],"(MTIs),":[58],"disease-gene":[60],"(DGAs),":[62],"holistic":[64],"approach":[65],"harnessing":[66],"diverse":[67,181],"data":[68,182,186,193],"sources":[69],"multifaceted":[71],"association":[72],"remains":[74],"largely":[75],"unexplored.":[76],"The":[77,195],"limited":[78],"availability":[79],"high-quality":[81],"data,":[82],"vitro":[84],"experiments":[85],"comprehensively":[87],"confirm":[88],"are":[90,199],"often":[91],"expensive":[92],"time-consuming,":[94],"results":[95],"in":[96,139],"sparse":[98],"noisy":[100],"heterogeneous":[101,141],"graph,":[102],"hindering":[103],"an":[104],"accurate":[105],"these":[108],"complex":[109],"associations.":[110],"To":[111],"address":[112],"this":[113],"challenge,":[114],"we":[115],"propose":[116],"novel":[118],"framework":[119],"called":[120],"Global-local":[121],"aware":[122],"Heterogeneous":[123],"Graph":[124],"Contrastive":[125],"Learning":[126],"(GlaHGCL).":[127],"GlaHGCL":[128,213],"combines":[129],"global":[130,145,158],"local":[132],"contrastive":[133,146,169],"learning":[134,147,170],"improve":[136],"node":[137,152,197],"embeddings":[138,153],"graph.":[142],"In":[143],"particular,":[144],"enhances":[148],"robustness":[150],"against":[154],"noise":[155],"by":[156],"aligning":[157],"representations":[159,198],"original":[162],"graph":[163],"its":[165,222],"augmented":[166],"counterpart.":[167],"Local":[168],"enforces":[171],"representation":[172],"consistency":[173],"between":[174],"functionally":[175],"similar":[176],"or":[177],"connected":[178],"nodes":[179],"across":[180],"sources,":[183],"effectively":[184],"heterogeneity":[187],"mitigating":[189],"issue":[191],"scarcity.":[194],"refined":[196],"applied":[200],"downstream":[202],"tasks,":[203],"MDA,":[206],"MTI,":[207],"DGA":[209],"prediction.":[210],"Experiments":[211],"show":[212],"outperforming":[214],"state-of-the-art":[215],"methods,":[216],"case":[218],"studies":[219],"further":[220],"demonstrate":[221],"ability":[223],"accurately":[225],"uncover":[226],"new":[227],"miRNAs,":[230],"diseases.":[233],"We":[234],"have":[235],"made":[236],"datasets":[238],"source":[240],"code":[241],"publicly":[242],"available":[243],"https://github.com/Sue-syx/GlaHGCL.":[245]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
