{"id":"https://openalex.org/W4401870024","doi":"https://doi.org/10.1093/bib/bbae421","title":"Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology","display_name":"Computational methods and biomarker discovery strategies for spatial proteomics: a review in immuno-oncology","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401870024","doi":"https://doi.org/10.1093/bib/bbae421","pmid":"https://pubmed.ncbi.nlm.nih.gov/39179248"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae421","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae421","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae421","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066717165","display_name":"Haoyang Mi","orcid":"https://orcid.org/0000-0001-8388-008X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Haoyang Mi","raw_affiliation_strings":["Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States"],"raw_orcid":"https://orcid.org/0000-0001-8388-008X","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086280484","display_name":"Shamilene Sivagnanam","orcid":"https://orcid.org/0000-0001-5966-1522"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I2801670537","display_name":"Providence Portland Medical Center","ror":"https://ror.org/015tmw922","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801670537","https://openalex.org/I4210160466","https://openalex.org/I94396219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shamilene Sivagnanam","raw_affiliation_strings":["Department of Cell , Development and Cancer Biology, , Portland, OR 97201, United States","Oregon Health and Science University , Development and Cancer Biology, , Portland, OR 97201, United States","The Knight Cancer Institute, Oregon Health and Science University , Portland, OR 97201, United States","Department of Cell, Development and Cancer Biology, Oregon Health and Science University, Portland, OR 97201, United States","The Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97201, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell , Development and Cancer Biology, , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I2801670537"]},{"raw_affiliation_string":"Oregon Health and Science University , Development and Cancer Biology, , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"The Knight Cancer Institute, Oregon Health and Science University , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Cell, Development and Cancer Biology, Oregon Health and Science University, Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"The Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048843293","display_name":"Won Jin Ho","orcid":"https://orcid.org/0000-0003-2644-5086"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Won Jin Ho","raw_affiliation_strings":["Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100762384","display_name":"Shuming Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuming Zhang","raw_affiliation_strings":["Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089499444","display_name":"Daniel Bergman","orcid":"https://orcid.org/0000-0002-2166-6616"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Bergman","raw_affiliation_strings":["Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082454884","display_name":"Atul Deshpande","orcid":"https://orcid.org/0000-0001-5144-6924"},"institutions":[{"id":"https://openalex.org/I1299907687","display_name":"Bloomberg (United States)","ror":"https://ror.org/02rdpzb15","country_code":"US","type":"company","lineage":["https://openalex.org/I1299907687"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Atul Deshpande","raw_affiliation_strings":["Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062308537","display_name":"Alexander S. Baras","orcid":"https://orcid.org/0000-0003-2397-3342"},"institutions":[{"id":"https://openalex.org/I1299907687","display_name":"Bloomberg (United States)","ror":"https://ror.org/02rdpzb15","country_code":"US","type":"company","lineage":["https://openalex.org/I1299907687"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander S Baras","raw_affiliation_strings":["Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Department of Pathology, Johns Hopkins University School of Medicine , MD 21205, United States","The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Department of Pathology, Johns Hopkins University School of Medicine, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Department of Pathology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Pathology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050642902","display_name":"Elizabeth M. Jaffee","orcid":"https://orcid.org/0000-0003-3841-6549"},"institutions":[{"id":"https://openalex.org/I1299907687","display_name":"Bloomberg (United States)","ror":"https://ror.org/02rdpzb15","country_code":"US","type":"company","lineage":["https://openalex.org/I1299907687"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth M Jaffee","raw_affiliation_strings":["Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025353193","display_name":"Lisa M. Coussens","orcid":"https://orcid.org/0000-0003-2389-1865"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]},{"id":"https://openalex.org/I2801670537","display_name":"Providence Portland Medical Center","ror":"https://ror.org/015tmw922","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801670537","https://openalex.org/I4210160466","https://openalex.org/I94396219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lisa M Coussens","raw_affiliation_strings":["Brenden-Colson Center for Pancreatic Care, Oregon Health and Science University , Portland, OR 97201, United States","Department of Cell , Development and Cancer Biology, , Portland, OR 97201, United States","Oregon Health and Science University , Development and Cancer Biology, , Portland, OR 97201, United States","The Knight Cancer Institute, Oregon Health and Science University , Portland, OR 97201, United States","Brenden-Colson Center for Pancreatic Care, Oregon Health and Science University, Portland, OR 97201, United States","The Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97201, United States","Department of Cell, Development and Cancer Biology, Oregon Health and Science University, Portland, OR 97201, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brenden-Colson Center for Pancreatic Care, Oregon Health and Science University , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Cell , Development and Cancer Biology, , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I2801670537"]},{"raw_affiliation_string":"Oregon Health and Science University , Development and Cancer Biology, , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"The Knight Cancer Institute, Oregon Health and Science University , Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Brenden-Colson Center for Pancreatic Care, Oregon Health and Science University, Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"The Knight Cancer Institute, Oregon Health and Science University, Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]},{"raw_affiliation_string":"Department of Cell, Development and Cancer Biology, Oregon Health and Science University, Portland, OR 97201, United States","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027701541","display_name":"Elana J. Fertig","orcid":"https://orcid.org/0000-0003-3204-342X"},"institutions":[{"id":"https://openalex.org/I1299907687","display_name":"Bloomberg (United States)","ror":"https://ror.org/02rdpzb15","country_code":"US","type":"company","lineage":["https://openalex.org/I1299907687"]},{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]},{"id":"https://openalex.org/I4210106595","display_name":"Sidney Kimmel Cancer Center","ror":"https://ror.org/010h6g454","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210106595"]},{"id":"https://openalex.org/I4210164401","display_name":"Sidney Kimmel Comprehensive Cancer Center","ror":"https://ror.org/05m5b8x20","country_code":"US","type":"facility","lineage":["https://openalex.org/I2799853436","https://openalex.org/I4210164401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elana J Fertig","raw_affiliation_strings":["Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","Department of Applied Mathematics and Statistics, Johns Hopkins University Whiting School of Engineering , Baltimore, MD 21218, United States","Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","Department of Applied Mathematics and Statistics, Johns Hopkins University Whiting School of Engineering, Baltimore, MD 21218, United States","Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Johns Hopkins University Whiting School of Engineering , Baltimore, MD 21218, United States","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Bloomberg-Kimmel Institute for Cancer Immunotherapy, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I4210164401","https://openalex.org/I4210106595","https://openalex.org/I145311948","https://openalex.org/I1299907687"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Applied Mathematics and Statistics, Johns Hopkins University Whiting School of Engineering, Baltimore, MD 21218, United States","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Convergence Institute, Johns Hopkins University, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030268482","display_name":"Aleksander S. Popel","orcid":"https://orcid.org/0000-0002-6706-9235"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aleksander S Popel","raw_affiliation_strings":["Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine , Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine , MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]},{"raw_affiliation_string":"Department of Oncology, Johns Hopkins University School of Medicine, MD 21205, United States","institution_ids":["https://openalex.org/I2799853436","https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5066717165"],"corresponding_institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":7.6137,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.98363561,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.978600025177002,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.799085795879364},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.7163451313972473},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5821528434753418},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5794951915740967},{"id":"https://openalex.org/keywords/precision-oncology","display_name":"Precision oncology","score":0.5684438943862915},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4658096134662628},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4318258762359619},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24063271284103394},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.22731620073318481},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2040998339653015},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.12197735905647278},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.05926358699798584},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.051905304193496704}],"concepts":[{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.799085795879364},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.7163451313972473},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5821528434753418},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5794951915740967},{"id":"https://openalex.org/C3020497934","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision oncology","level":3,"score":0.5684438943862915},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4658096134662628},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4318258762359619},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24063271284103394},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.22731620073318481},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2040998339653015},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.12197735905647278},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.05926358699798584},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.051905304193496704}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae421","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae421","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39179248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39179248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11343572","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11343572","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11343572/pdf/bbae421.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae421","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae421","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3299316360","display_name":null,"funder_award_id":"U01CA253403","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5379548675","display_name":null,"funder_award_id":"U01CA212007","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8934527536","display_name":null,"funder_award_id":"R01CA138264","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306141","display_name":"Susan G. Komen for the Cure","ror":"https://ror.org/02nadbe75"},{"id":"https://openalex.org/F4320307105","display_name":"Amgen","ror":"https://ror.org/03g03ge92"},{"id":"https://openalex.org/F4320307765","display_name":"Pfizer","ror":"https://ror.org/01xdqrp08"},{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"},{"id":"https://openalex.org/F4320307781","display_name":"Sanofi","ror":"https://ror.org/027vj4x92"},{"id":"https://openalex.org/F4320309233","display_name":"Oregon Health and Science University","ror":"https://ror.org/009avj582"},{"id":"https://openalex.org/F4320312140","display_name":"Exelixis","ror":"https://ror.org/01e3jga91"},{"id":"https://openalex.org/F4320315119","display_name":"Parker Institute for Cancer Immunotherapy","ror":"https://ror.org/0184qbg02"},{"id":"https://openalex.org/F4320316669","display_name":"Break Through Cancer","ror":null},{"id":"https://openalex.org/F4320316999","display_name":"Prospect Creek Foundation","ror":null},{"id":"https://openalex.org/F4320317544","display_name":"Incyte","ror":"https://ror.org/00cvzzg84"},{"id":"https://openalex.org/F4320317987","display_name":"Syndax Pharmaceuticals","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332193","display_name":"Genentech","ror":"https://ror.org/04gndp242"},{"id":"https://openalex.org/F4320334461","display_name":"Foundation Medicine","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":287,"referenced_works":["https://openalex.org/W151377110","https://openalex.org/W1531312210","https://openalex.org/W1547714734","https://openalex.org/W1548827537","https://openalex.org/W1631320694","https://openalex.org/W1818937361","https://openalex.org/W1859257957","https://openalex.org/W1977653087","https://openalex.org/W1979105493","https://openalex.org/W1979693095","https://openalex.org/W1987219048","https://openalex.org/W1991927948","https://openalex.org/W1993835819","https://openalex.org/W1995875735","https://openalex.org/W2008929650","https://openalex.org/W2016277672","https://openalex.org/W2019605179","https://openalex.org/W2023010129","https://openalex.org/W2027941603","https://openalex.org/W2042437331","https://openalex.org/W2045059595","https://openalex.org/W2052611179","https://openalex.org/W2053129129","https://openalex.org/W2057114171","https://openalex.org/W2065928352","https://openalex.org/W2067688310","https://openalex.org/W2076507262","https://openalex.org/W2080823694","https://openalex.org/W2083384375","https://openalex.org/W2083927153","https://openalex.org/W2087699088","https://openalex.org/W2096192437","https://openalex.org/W2099540110","https://openalex.org/W2101585919","https://openalex.org/W2107554012","https://openalex.org/W2113576511","https://openalex.org/W2126047962","https://openalex.org/W2126470947","https://openalex.org/W2129112648","https://openalex.org/W2129601604","https://openalex.org/W2130915594","https://openalex.org/W2131586477","https://openalex.org/W2133059825","https://openalex.org/W2134560790","https://openalex.org/W2139790154","https://openalex.org/W2150461375","https://openalex.org/W2164765928","https://openalex.org/W2165232124","https://openalex.org/W2170249894","https://openalex.org/W2195858147","https://openalex.org/W2218252399","https://openalex.org/W2218779488","https://openalex.org/W2291619526","https://openalex.org/W2358421111","https://openalex.org/W2395611524","https://openalex.org/W2479420012","https://openalex.org/W2482092413","https://openalex.org/W2484573964","https://openalex.org/W2518602358","https://openalex.org/W2521690972","https://openalex.org/W2528220687","https://openalex.org/W2561429117","https://openalex.org/W2599894583","https://openalex.org/W2604591951","https://openalex.org/W2609921003","https://openalex.org/W2700381762","https://openalex.org/W2743344672","https://openalex.org/W2744335798","https://openalex.org/W2749543902","https://openalex.org/W2750206788","https://openalex.org/W2763518120","https://openalex.org/W2765774350","https://openalex.org/W2772723798","https://openalex.org/W2772926238","https://openalex.org/W2775018477","https://openalex.org/W2784226479","https://openalex.org/W2786209829","https://openalex.org/W2793226746","https://openalex.org/W2796409016","https://openalex.org/W2802913018","https://openalex.org/W2804010147","https://openalex.org/W2806530968","https://openalex.org/W2810097927","https://openalex.org/W2832881433","https://openalex.org/W2885824038","https://openalex.org/W2886595805","https://openalex.org/W2889089723","https://openalex.org/W2889232360","https://openalex.org/W2890156321","https://openalex.org/W2891696518","https://openalex.org/W2897068067","https://openalex.org/W2900654702","https://openalex.org/W2903919837","https://openalex.org/W2904637689","https://openalex.org/W2905403119","https://openalex.org/W2906851567","https://openalex.org/W2939050492","https://openalex.org/W2939957413","https://openalex.org/W2943370629","https://openalex.org/W2949238013","https://openalex.org/W2952481429","https://openalex.org/W2955068725","https://openalex.org/W2961686530","https://openalex.org/W2963150697","https://openalex.org/W2963881378","https://openalex.org/W2967444033","https://openalex.org/W2967681225","https://openalex.org/W2969657290","https://openalex.org/W2971193829","https://openalex.org/W2971714046","https://openalex.org/W2972958689","https://openalex.org/W2974825848","https://openalex.org/W2979301772","https://openalex.org/W2979411406","https://openalex.org/W2982444549","https://openalex.org/W2984916588","https://openalex.org/W2998141119","https://openalex.org/W2999365564","https://openalex.org/W2999681746","https://openalex.org/W3014494607","https://openalex.org/W3015646919","https://openalex.org/W3026205722","https://openalex.org/W3036665498","https://openalex.org/W3036962145","https://openalex.org/W3038533377","https://openalex.org/W3042024476","https://openalex.org/W3043426905","https://openalex.org/W3047081808","https://openalex.org/W3084493749","https://openalex.org/W3092103057","https://openalex.org/W3093154039","https://openalex.org/W3093888870","https://openalex.org/W3108152855","https://openalex.org/W3109688911","https://openalex.org/W3111521801","https://openalex.org/W3118794388","https://openalex.org/W3130036784","https://openalex.org/W3131795679","https://openalex.org/W3136861954","https://openalex.org/W3153915435","https://openalex.org/W3165120573","https://openalex.org/W3165215947","https://openalex.org/W3173096232","https://openalex.org/W3173648257","https://openalex.org/W3173794316","https://openalex.org/W3176595109","https://openalex.org/W3183379795","https://openalex.org/W3183511791","https://openalex.org/W3185935705","https://openalex.org/W3186127018","https://openalex.org/W3186317940","https://openalex.org/W3188474407","https://openalex.org/W3191200534","https://openalex.org/W3193419934","https://openalex.org/W3194359278","https://openalex.org/W3195317458","https://openalex.org/W3197433610","https://openalex.org/W3202604077","https://openalex.org/W3205432617","https://openalex.org/W3209075694","https://openalex.org/W3210176954","https://openalex.org/W3212078732","https://openalex.org/W3214361718","https://openalex.org/W3214596602","https://openalex.org/W4200324152","https://openalex.org/W4205876996","https://openalex.org/W4205900565","https://openalex.org/W4207066074","https://openalex.org/W4210583065","https://openalex.org/W4211061692","https://openalex.org/W4220780302","https://openalex.org/W4220913055","https://openalex.org/W4221125550","https://openalex.org/W4224016686","https://openalex.org/W4224215874","https://openalex.org/W4225157576","https://openalex.org/W4225278475","https://openalex.org/W4226057452","https://openalex.org/W4226135249","https://openalex.org/W4226192560","https://openalex.org/W4229658977","https://openalex.org/W4280494974","https://openalex.org/W4280560433","https://openalex.org/W4280650826","https://openalex.org/W4281733104","https://openalex.org/W4282923240","https://openalex.org/W4283160390","https://openalex.org/W4283328704","https://openalex.org/W4285091187","https://openalex.org/W4285781363","https://openalex.org/W4286462293","https://openalex.org/W4286717543","https://openalex.org/W4288052572","https://openalex.org/W4292064516","https://openalex.org/W4292171534","https://openalex.org/W4292325804","https://openalex.org/W4292856186","https://openalex.org/W4294031571","https://openalex.org/W4295951229","https://openalex.org/W4296030046","https://openalex.org/W4296036534","https://openalex.org/W4296691020","https://openalex.org/W4296941367","https://openalex.org/W4301392676","https://openalex.org/W4307184360","https://openalex.org/W4307286999","https://openalex.org/W4307373120","https://openalex.org/W4307446864","https://openalex.org/W4307717106","https://openalex.org/W4308770506","https://openalex.org/W4308773895","https://openalex.org/W4308868327","https://openalex.org/W4309918428","https://openalex.org/W4311486734","https://openalex.org/W4312220066","https://openalex.org/W4313389551","https://openalex.org/W4313584791","https://openalex.org/W4318817212","https://openalex.org/W4318831792","https://openalex.org/W4319440743","https://openalex.org/W4322616967","https://openalex.org/W4323310120","https://openalex.org/W4362671863","https://openalex.org/W4366335781","https://openalex.org/W4366372498","https://openalex.org/W4366742732","https://openalex.org/W4376631203","https://openalex.org/W4376643112","https://openalex.org/W4378219650","https://openalex.org/W4381434610","https://openalex.org/W4381597734","https://openalex.org/W4381785650","https://openalex.org/W4382631055","https://openalex.org/W4382753177","https://openalex.org/W4383620846","https://openalex.org/W4384664335","https://openalex.org/W4385231817","https://openalex.org/W4385444202","https://openalex.org/W4385450278","https://openalex.org/W4385948838","https://openalex.org/W4386171305","https://openalex.org/W4386387831","https://openalex.org/W4386414611","https://openalex.org/W4386493325","https://openalex.org/W4386530891","https://openalex.org/W4386619298","https://openalex.org/W4386811476","https://openalex.org/W4387092607","https://openalex.org/W4387211843","https://openalex.org/W4387259074","https://openalex.org/W4387333371","https://openalex.org/W4387614171","https://openalex.org/W4387875778","https://openalex.org/W4387948978","https://openalex.org/W4388409309","https://openalex.org/W4388712787","https://openalex.org/W4388895542","https://openalex.org/W4389488172","https://openalex.org/W4389986905","https://openalex.org/W4390500579","https://openalex.org/W4390534218","https://openalex.org/W4390732356","https://openalex.org/W4390972528","https://openalex.org/W4391109864","https://openalex.org/W4391897114","https://openalex.org/W4391994490","https://openalex.org/W4392947521","https://openalex.org/W4392947532","https://openalex.org/W4393200219","https://openalex.org/W4399597232","https://openalex.org/W6741450815","https://openalex.org/W6753077377","https://openalex.org/W6760045743","https://openalex.org/W6767710714","https://openalex.org/W6798602855","https://openalex.org/W6802958729","https://openalex.org/W6839389636","https://openalex.org/W6841955028","https://openalex.org/W6842766612","https://openalex.org/W6842841370","https://openalex.org/W6850281089","https://openalex.org/W6850948890","https://openalex.org/W6852449726","https://openalex.org/W6856264766","https://openalex.org/W6858005122","https://openalex.org/W6863356275","https://openalex.org/W7016150859"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W1539981706","https://openalex.org/W1485011350","https://openalex.org/W2108949684","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977"],"abstract_inverted_index":{"Advancements":[0],"in":[1,53,140],"imaging":[2,18],"technologies":[3],"have":[4,42,64],"revolutionized":[5],"our":[6],"ability":[7],"to":[8,44,84,93,114],"deeply":[9],"profile":[10],"pathological":[11],"tissue":[12],"architectures,":[13],"generating":[14],"large":[15],"volumes":[16],"of":[17,26,49,75],"data":[19,27],"with":[20,130],"unparalleled":[21],"spatial":[22,30,50],"resolution.":[23],"This":[24,90],"type":[25],"collection,":[28],"namely,":[29],"proteomics,":[31],"offers":[32],"invaluable":[33],"insights":[34],"into":[35],"various":[36],"human":[37],"diseases.":[38],"Simultaneously,":[39],"computational":[40,58,62,105],"algorithms":[41],"evolved":[43],"manage":[45],"the":[46,73,125],"increasing":[47],"dimensionality":[48],"proteomics":[51],"inherent":[52],"this":[54,95],"progress.":[55],"Numerous":[56],"imaging-based":[57],"frameworks,":[59],"such":[60],"as":[61,124],"pathology,":[63],"been":[65],"proposed":[66],"for":[67,137],"research":[68],"and":[69,87,107],"clinical":[70],"applications.":[71],"However,":[72],"development":[74],"these":[76],"fields":[77],"demands":[78],"diverse":[79],"domain":[80],"expertise,":[81],"creating":[82],"barriers":[83],"their":[85],"integration":[86],"further":[88],"application.":[89],"review":[91],"seeks":[92],"bridge":[94],"divide":[96],"by":[97],"presenting":[98],"a":[99,109],"comprehensive":[100],"guideline.":[101],"We":[102],"consolidate":[103],"prevailing":[104],"methods":[106],"outline":[108],"roadmap":[110],"from":[111],"image":[112],"processing":[113],"data-driven,":[115],"statistics-informed":[116],"biomarker":[117],"discovery.":[118],"Additionally,":[119],"we":[120],"explore":[121],"future":[122],"perspectives":[123],"field":[126],"moves":[127],"toward":[128],"interfacing":[129],"other":[131],"quantitative":[132],"domains,":[133],"holding":[134],"significant":[135],"promise":[136],"precision":[138],"care":[139],"immuno-oncology.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
