{"id":"https://openalex.org/W4402147295","doi":"https://doi.org/10.1093/bib/bbae419","title":"Enteropathway: the metabolic pathway database for the human gut microbiota","display_name":"Enteropathway: the metabolic pathway database for the human gut microbiota","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4402147295","doi":"https://doi.org/10.1093/bib/bbae419","pmid":"https://pubmed.ncbi.nlm.nih.gov/39222063"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae419","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae419/58994668/bbae419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae419/58994668/bbae419.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010972447","display_name":"Hirotsugu Shiroma","orcid":"https://orcid.org/0000-0001-9575-0469"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hirotsugu Shiroma","raw_affiliation_strings":["School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":"https://orcid.org/0000-0001-9575-0469","affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003198691","display_name":"Youssef Darzi","orcid":"https://orcid.org/0000-0001-7655-5764"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Youssef Darzi","raw_affiliation_strings":["Omixer solutions , 4-7-15, Zaimokuza, Kamakura-shi, Kanagawa 248-0013, Japan","School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Omixer solutions , 4-7-15, Zaimokuza, Kamakura-shi, Kanagawa 248-0013, Japan","institution_ids":[]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092349039","display_name":"Etsuko Terajima","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Etsuko Terajima","raw_affiliation_strings":["School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036120625","display_name":"Zenichi Nakagawa","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Zenichi Nakagawa","raw_affiliation_strings":["School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092349040","display_name":"Hirotaka Tsuchikura","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hirotaka Tsuchikura","raw_affiliation_strings":["School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065620141","display_name":"Naoki Tsukuda","orcid":"https://orcid.org/0000-0002-4660-8498"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Naoki Tsukuda","raw_affiliation_strings":["School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036198187","display_name":"Yuki Moriya","orcid":"https://orcid.org/0000-0001-8195-5893"},"institutions":[{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuki Moriya","raw_affiliation_strings":["Database Center for Life Science , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","Research Organization of Information and Systems , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Research Organization of Information and Systems , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062655330","display_name":"Shujiro Okuda","orcid":"https://orcid.org/0000-0002-7704-8104"},"institutions":[{"id":"https://openalex.org/I71395657","display_name":"Niigata University","ror":"https://ror.org/04ww21r56","country_code":"JP","type":"education","lineage":["https://openalex.org/I71395657"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shujiro Okuda","raw_affiliation_strings":["Graduate School of Medical and Dental Sciences, Niigata University , 2-5274, Gakkocho-dori, Chuo-ku, Niigata City, Niigata 951-8514, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Medical and Dental Sciences, Niigata University , 2-5274, Gakkocho-dori, Chuo-ku, Niigata City, Niigata 951-8514, Japan","institution_ids":["https://openalex.org/I71395657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102872908","display_name":"Susumu Goto","orcid":"https://orcid.org/0000-0003-2989-8486"},"institutions":[{"id":"https://openalex.org/I4210158934","display_name":"Research Organization of Information and Systems","ror":"https://ror.org/04p4e8t29","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Susumu Goto","raw_affiliation_strings":["Database Center for Life Science , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","Research Organization of Information and Systems , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Database Center for Life Science , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","institution_ids":["https://openalex.org/I4210158934"]},{"raw_affiliation_string":"Research Organization of Information and Systems , Joint Support-Center for Data Science Research, , 178-4-4 Wakashiba, Kashiwa-shi, Chiba 277-0871, Japan","institution_ids":["https://openalex.org/I4210158934"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034753115","display_name":"Takuji Yamada","orcid":"https://orcid.org/0000-0002-9622-1849"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takuji Yamada","raw_affiliation_strings":["Digzyme , Inc., 2-2-1 Toranomon, Minato-ku, Tokyo 105-0001, Japan","Metagen , Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan","Metagen Theurapeutics , Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan","School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digzyme , Inc., 2-2-1 Toranomon, Minato-ku, Tokyo 105-0001, Japan","institution_ids":[]},{"raw_affiliation_string":"Metagen , Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan","institution_ids":[]},{"raw_affiliation_string":"Metagen Theurapeutics , Inc., 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan","institution_ids":[]},{"raw_affiliation_string":"School of Life Science and Technology, Tokyo Institute of Technology , 2-12-1 M6-3 Ookayama, Meguro-ku, Tokyo 152-8550, Japan","institution_ids":["https://openalex.org/I114531698"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.0411,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.87012625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.6041115522384644},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5775604844093323},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.4843674600124359},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.4804113209247589},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42017504572868347},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.410759299993515},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4023905396461487},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3248724341392517},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21286123991012573},{"id":"https://openalex.org/keywords/metabolism","display_name":"Metabolism","score":0.16881906986236572},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09568324685096741}],"concepts":[{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.6041115522384644},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5775604844093323},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.4843674600124359},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.4804113209247589},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42017504572868347},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.410759299993515},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4023905396461487},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3248724341392517},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21286123991012573},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.16881906986236572},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09568324685096741}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae419","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae419/58994668/bbae419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39222063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39222063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11367760","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11367760","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11367760/pdf/bbae419.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae419","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae419/58994668/bbae419.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1115653764","display_name":null,"funder_award_id":"JP21ck0106546h0002","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G2327091610","display_name":null,"funder_award_id":"JP21cm0106477","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G3159738597","display_name":null,"funder_award_id":"JPMJCR19U3","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3561321662","display_name":null,"funder_award_id":"JP16H06279","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5498918405","display_name":null,"funder_award_id":"JP22ama221404","funder_id":"https://openalex.org/F4320311405","funder_display_name":"Japan Agency for Medical Research and Development"},{"id":"https://openalex.org/G802014414","display_name":null,"funder_award_id":"JP25710016","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G982233341","display_name":null,"funder_award_id":"KAKENHI JP16H06279","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402147295.pdf","grobid_xml":"https://content.openalex.org/works/W4402147295.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W958079127","https://openalex.org/W2113466108","https://openalex.org/W2127287605","https://openalex.org/W2132406938","https://openalex.org/W2159482845","https://openalex.org/W2203870283","https://openalex.org/W2255717496","https://openalex.org/W2434635261","https://openalex.org/W2761145411","https://openalex.org/W2800340189","https://openalex.org/W2890182727","https://openalex.org/W2900629010","https://openalex.org/W2913620138","https://openalex.org/W2940995627","https://openalex.org/W2951518977","https://openalex.org/W2977870980","https://openalex.org/W2990182987","https://openalex.org/W2991239467","https://openalex.org/W3033622977","https://openalex.org/W3034548692","https://openalex.org/W3045818979","https://openalex.org/W3081733445","https://openalex.org/W3083241614","https://openalex.org/W3097145107","https://openalex.org/W3105895642","https://openalex.org/W3112376646","https://openalex.org/W3118909662","https://openalex.org/W3143063265","https://openalex.org/W3156018770","https://openalex.org/W3157684799","https://openalex.org/W3159504416","https://openalex.org/W3184541229","https://openalex.org/W3193861087","https://openalex.org/W3200103613","https://openalex.org/W3205230916","https://openalex.org/W3211718555","https://openalex.org/W4206806868","https://openalex.org/W4213093937","https://openalex.org/W4213163295","https://openalex.org/W4221131751","https://openalex.org/W4224266347","https://openalex.org/W4224868124","https://openalex.org/W4283812770","https://openalex.org/W4294216483","https://openalex.org/W4295929883","https://openalex.org/W4296833397","https://openalex.org/W4304481015","https://openalex.org/W4309506674","https://openalex.org/W4320486508","https://openalex.org/W6802416451","https://openalex.org/W7075692884"],"related_works":["https://openalex.org/W2109940557","https://openalex.org/W2466832359","https://openalex.org/W4391210591","https://openalex.org/W1582019636","https://openalex.org/W1499005795","https://openalex.org/W3172493050","https://openalex.org/W4385420271","https://openalex.org/W4312192618","https://openalex.org/W2593798266","https://openalex.org/W4385414918"],"abstract_inverted_index":{"The":[0,84],"human":[1,35,142],"gut":[2,36,143],"microbiota":[3,37,144,160],"produces":[4],"diverse,":[5],"extensive":[6],"metabolites":[7],"that":[8,49,58,93,127],"have":[9],"the":[10,34,117,156],"potential":[11],"to":[12,19,149],"affect":[13],"host":[14,162],"physiology.":[15],"Despite":[16],"significant":[17],"efforts":[18],"identify":[20],"metabolic":[21,30,46,96,102,118],"pathways":[22],"for":[23,33,98,112,136],"producing":[24],"these":[25,71],"microbial":[26],"metabolites,":[27],"a":[28,45,89,95,104,123,134],"comprehensive":[29,124],"pathway":[31,47],"database":[32,48,85,126],"is":[38,86,122],"still":[39],"lacking.":[40],"Here,":[41],"we":[42],"present":[43],"Enteropathway,":[44],"integrates":[50],"3269":[51],"compounds,":[52],"3677":[53],"reactions,":[54],"and":[55,76,107,133,138,146,161],"876":[56],"modules":[57,69,72,115],"were":[59],"obtained":[60],"from":[61,88],"1012":[62],"manually":[63],"curated":[64],"scientific":[65],"literature.":[66],"Notably,":[67],"698":[68],"of":[70,101],"are":[73],"new":[74,153],"entries":[75],"cannot":[77],"be":[78],"found":[79],"in":[80,141],"any":[81],"other":[82],"databases.":[83],"accessible":[87],"web":[90],"application":[91],"(https://enteropathway.org)":[92],"offers":[94],"diagram":[97],"graphical":[99],"visualization":[100],"pathways,":[103],"customization":[105],"interface,":[106],"an":[108],"enrichment":[109],"analysis":[110,140],"feature":[111],"highlighting":[113],"enriched":[114],"on":[116],"diagram.":[119],"Overall,":[120],"Enteropathway":[121],"reference":[125],"can":[128],"complement":[129],"widely":[130],"used":[131],"databases,":[132],"tool":[135],"visual":[137],"statistical":[139],"studies":[145],"was":[147],"designed":[148],"help":[150],"researchers":[151],"pinpoint":[152],"insights":[154],"into":[155],"complex":[157],"interplay":[158],"between":[159],"metabolism.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
