{"id":"https://openalex.org/W4401715999","doi":"https://doi.org/10.1093/bib/bbae403","title":"AntiFormer: graph enhanced large language model for binding affinity prediction","display_name":"AntiFormer: graph enhanced large language model for binding affinity prediction","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401715999","doi":"https://doi.org/10.1093/bib/bbae403","pmid":"https://pubmed.ncbi.nlm.nih.gov/39162312"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae403","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae403","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae403/58856369/bbae403.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae403/58856369/bbae403.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100691702","display_name":"Qing Wang","orcid":"https://orcid.org/0000-0001-9504-4273"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qing Wang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","University of Florida , College of Medicine, , FL 32611 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","institution_ids":[]},{"raw_affiliation_string":"University of Florida , College of Medicine, , FL 32611 , USA","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022870859","display_name":"Yuzhou Feng","orcid":"https://orcid.org/0000-0003-0735-2677"},"institutions":[{"id":"https://openalex.org/I102208913","display_name":"Shihezi University","ror":"https://ror.org/04x0kvm78","country_code":"CN","type":"education","lineage":["https://openalex.org/I102208913"]},{"id":"https://openalex.org/I2800091995","display_name":"West China Medical Center of Sichuan University","ror":"https://ror.org/040nggs60","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I24185976","https://openalex.org/I2800091995"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuzhou Feng","raw_affiliation_strings":["Department of Laboratory Medicine and West China Biomedical Big Data Center, West China Hospital, Sichuan University , Chengdu 610041 , China","Shihezi University School of Medicine, Shihezi University , Shihezi 832003 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Laboratory Medicine and West China Biomedical Big Data Center, West China Hospital, Sichuan University , Chengdu 610041 , China","institution_ids":["https://openalex.org/I2800091995"]},{"raw_affiliation_string":"Shihezi University School of Medicine, Shihezi University , Shihezi 832003 , China","institution_ids":["https://openalex.org/I102208913"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115601952","display_name":"Yanfei Wang","orcid":"https://orcid.org/0000-0002-0725-6709"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanfei Wang","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","University of Florida , College of Medicine, , FL 32611 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","institution_ids":[]},{"raw_affiliation_string":"University of Florida , College of Medicine, , FL 32611 , USA","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100374491","display_name":"Bo Li","orcid":"https://orcid.org/0000-0003-0608-1502"},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Bo Li","raw_affiliation_strings":["Department of Computer and Information Science, University of Macau , Macau SAR , China"],"raw_orcid":"https://orcid.org/0000-0003-0608-1502","affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, University of Macau , Macau SAR , China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jianguo Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianguo Wen","raw_affiliation_strings":["Center for Computational Systems Medicine , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","The University of Texas Health Science Center at Houston , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Systems Medicine , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Health Science Center at Houston , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110854679","display_name":"Xiaobo Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaobo Zhou","raw_affiliation_strings":["Center for Computational Systems Medicine , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","The University of Texas Health Science Center at Houston , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Systems Medicine , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","institution_ids":[]},{"raw_affiliation_string":"The University of Texas Health Science Center at Houston , McWilliams School of Biomedical Informatics, , Houston, TX 77030 , USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101825312","display_name":"Qianqian Song","orcid":"https://orcid.org/0000-0002-4455-5302"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianqian Song","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","University of Florida , College of Medicine, , FL 32611 , USA"],"raw_orcid":"https://orcid.org/0000-0002-4455-5302","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics , College of Medicine, , FL 32611 , USA","institution_ids":[]},{"raw_affiliation_string":"University of Florida , College of Medicine, , FL 32611 , USA","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100691702"],"corresponding_institution_ids":["https://openalex.org/I33213144","https://openalex.org/I94062374"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.211,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94481331,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.6823703646659851},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.6678586006164551},{"id":"https://openalex.org/keywords/affinity-maturation","display_name":"Affinity maturation","score":0.6662470102310181},{"id":"https://openalex.org/keywords/vaccination","display_name":"Vaccination","score":0.5841382145881653},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5792653560638428},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.5367056131362915},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.48842185735702515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.455181360244751}],"concepts":[{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.6823703646659851},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.6678586006164551},{"id":"https://openalex.org/C2781377902","wikidata":"https://www.wikidata.org/wiki/Q21418769","display_name":"Affinity maturation","level":3,"score":0.6662470102310181},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.5841382145881653},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5792653560638428},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.5367056131362915},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.48842185735702515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.455181360244751}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae403","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae403","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae403/58856369/bbae403.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39162312","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39162312","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11333967","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11333967","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11333967/pdf/bbae403.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthshis_docs-1551","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthshis_docs/560","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty, Staff and Student Publications","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae403","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae403","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae403/58856369/bbae403.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7300000190734863,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1437124406","display_name":null,"funder_award_id":"2023YFS0200","funder_id":"https://openalex.org/F4320336042","funder_display_name":"West China Hospital, Sichuan University"},{"id":"https://openalex.org/G2286337162","display_name":null,"funder_award_id":"2217515","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2719934677","display_name":null,"funder_award_id":"R01CA241930","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G291053052","display_name":null,"funder_award_id":"139170052","funder_id":"https://openalex.org/F4320336042","funder_display_name":"West China Hospital, Sichuan University"},{"id":"https://openalex.org/G4593937456","display_name":null,"funder_award_id":"R01LM014156","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5019684235","display_name":null,"funder_award_id":"R01GM153822","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6919112675","display_name":null,"funder_award_id":"139170052","funder_id":"https://openalex.org/F4320322990","funder_display_name":"Sichuan University"},{"id":"https://openalex.org/G6994599241","display_name":null,"funder_award_id":"2326879","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7908063170","display_name":null,"funder_award_id":"2217515","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8296126340","display_name":null,"funder_award_id":"2326879","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320322990","display_name":"Sichuan University","ror":"https://ror.org/011ashp19"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320336042","display_name":"West China Hospital, Sichuan University","ror":"https://ror.org/007mrxy13"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4401715999.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W2038968935","https://openalex.org/W2083028331","https://openalex.org/W2140673705","https://openalex.org/W2167833742","https://openalex.org/W2232023111","https://openalex.org/W2337033889","https://openalex.org/W2750779823","https://openalex.org/W2794480084","https://openalex.org/W2937667996","https://openalex.org/W2947780489","https://openalex.org/W2964015378","https://openalex.org/W2975204303","https://openalex.org/W2980282514","https://openalex.org/W2991044292","https://openalex.org/W2991612931","https://openalex.org/W2993866869","https://openalex.org/W2999958881","https://openalex.org/W3002623081","https://openalex.org/W3009634016","https://openalex.org/W3049166744","https://openalex.org/W3129633728","https://openalex.org/W3129830773","https://openalex.org/W3176743663","https://openalex.org/W3177828909","https://openalex.org/W3177994886","https://openalex.org/W3206187363","https://openalex.org/W4200635416","https://openalex.org/W4255658650","https://openalex.org/W4280625391","https://openalex.org/W4287342310","https://openalex.org/W4292348744","https://openalex.org/W4293764391","https://openalex.org/W4307348807","https://openalex.org/W4317679756","https://openalex.org/W4320519557","https://openalex.org/W4380321714","https://openalex.org/W4382138885","https://openalex.org/W4385245566","https://openalex.org/W4386692444","https://openalex.org/W4387381575","https://openalex.org/W4388624413","https://openalex.org/W6726873649","https://openalex.org/W6739901393","https://openalex.org/W6749980472","https://openalex.org/W6755207826","https://openalex.org/W6768817161","https://openalex.org/W6770565238","https://openalex.org/W6773472714","https://openalex.org/W6777023738","https://openalex.org/W6805005235","https://openalex.org/W6842477694"],"related_works":["https://openalex.org/W2082316630","https://openalex.org/W1979560439","https://openalex.org/W2766329113","https://openalex.org/W4225788835","https://openalex.org/W3204138838","https://openalex.org/W4390689692","https://openalex.org/W2168907141","https://openalex.org/W3094402636","https://openalex.org/W3166589558","https://openalex.org/W103355151"],"abstract_inverted_index":{"Antibodies":[0],"play":[1],"a":[2,63,79,191],"pivotal":[3],"role":[4],"in":[5,52,143,161,167,181],"immune":[6,38,168,186],"defense":[7],"and":[8,29,130,148,185,198,206],"serve":[9],"as":[10],"key":[11],"therapeutic":[12,128],"agents.":[13],"The":[14],"process":[15],"of":[16,86,108,135,177],"affinity":[17,30,46,158,183],"maturation,":[18],"wherein":[19],"antibodies":[20,120],"evolve":[21],"through":[22],"somatic":[23],"mutations":[24],"to":[25,31,50,69,110,194],"achieve":[26],"heightened":[27],"specificity":[28],"target":[32],"antigens,":[33],"is":[34,190],"crucial":[35],"for":[36,83,127],"effective":[37],"response.":[39],"Despite":[40],"their":[41],"significance,":[42],"assessing":[43],"antibody-antigen":[44],"binding":[45,72,87,157],"remains":[47],"challenging":[48],"due":[49],"limitations":[51],"conventional":[53],"wet":[54],"lab":[55],"techniques.":[56],"To":[57],"address":[58],"this,":[59],"we":[60],"introduce":[61],"AntiFormer,":[62],"graph-based":[64,80],"large":[65,178],"language":[66],"model":[67],"designed":[68],"predict":[70],"antibody":[71,144,208],"affinity.":[73,88],"AntiFormer":[74,92,109,151,189],"incorporates":[75],"sequence":[76],"information":[77],"into":[78],"framework,":[81],"allowing":[82],"precise":[84],"prediction":[85],"Through":[89],"extensive":[90],"evaluations,":[91],"demonstrates":[93],"superior":[94],"performance":[95],"compared":[96],"with":[97,103,121,155],"existing":[98],"methods,":[99],"offering":[100],"accurate":[101],"predictions":[102],"reduced":[104],"computational":[105],"time.":[106],"Application":[107],"severe":[111],"acute":[112],"respiratory":[113],"syndrome":[114],"coronavirus":[115],"2":[116],"patient":[117],"samples":[118,137],"reveals":[119],"strong":[122],"neutralizing":[123],"capabilities,":[124],"providing":[125],"insights":[126],"development":[129],"vaccination":[131,140],"strategies.":[132],"Furthermore,":[133],"analysis":[134],"individual":[136],"following":[138],"influenza":[139],"elucidates":[141],"differences":[142],"response":[145,169],"between":[146,203],"young":[147,162],"older":[149],"adults.":[150],"identifies":[152],"specific":[153],"clonotypes":[154],"enhanced":[156],"post-vaccination,":[159],"particularly":[160],"individuals,":[163],"suggesting":[164],"age-related":[165],"variations":[166],"dynamics.":[170],"Moreover,":[171],"our":[172],"findings":[173],"underscore":[174],"the":[175,201],"importance":[176],"clonotype":[179],"category":[180],"driving":[182],"maturation":[184,209],"modulation.":[187],"Overall,":[188],"promising":[192],"approach":[193],"accelerate":[195],"antibody-based":[196],"diagnostics":[197],"therapeutics,":[199],"bridging":[200],"gap":[202],"traditional":[204],"methods":[205],"complex":[207],"processes.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-17T08:19:37.847499","created_date":"2025-10-10T00:00:00"}
