{"id":"https://openalex.org/W4401441420","doi":"https://doi.org/10.1093/bib/bbae388","title":"xSiGra: explainable model for single-cell spatial data elucidation","display_name":"xSiGra: explainable model for single-cell spatial data elucidation","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401441420","doi":"https://doi.org/10.1093/bib/bbae388","pmid":"https://pubmed.ncbi.nlm.nih.gov/39120644"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae388","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae388/58784630/bbae388.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae388/58784630/bbae388.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106379671","display_name":"Aishwarya Budhkar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aishwarya Budhkar","raw_affiliation_strings":["Indiana University Bloomington , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","Luddy School of Informatics , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University Bloomington , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Luddy School of Informatics , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074605808","display_name":"Ziyang Tang","orcid":"https://orcid.org/0000-0002-0019-7988"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziyang Tang","raw_affiliation_strings":["Department of Computer and Information Technology, Purdue University , 610 Purdue Mall, West Lafayette, IN 47907, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Technology, Purdue University , 610 Purdue Mall, West Lafayette, IN 47907, United States","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074854655","display_name":"Xiang Liu","orcid":"https://orcid.org/0000-0001-6888-4525"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiang Liu","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University School of Medicine , 340 W 10th St, Indianapolis, IN 46202, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine , 340 W 10th St, Indianapolis, IN 46202, United States","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101722404","display_name":"Xuhong Zhang","orcid":"https://orcid.org/0000-0001-7563-9915"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xuhong Zhang","raw_affiliation_strings":["Indiana University Bloomington , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","Luddy School of Informatics , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States"],"raw_orcid":"https://orcid.org/0000-0001-7563-9915","affiliations":[{"raw_affiliation_string":"Indiana University Bloomington , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Luddy School of Informatics , Computing, and Engineering, , 107 S Indiana Ave, Bloomington, IN 47405, United States","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034140883","display_name":"Jing Su","orcid":"https://orcid.org/0000-0003-4917-6173"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Su","raw_affiliation_strings":["Department of Biostatistics and Health Data Science, Indiana University School of Medicine , 340 W 10th St, Indianapolis, IN 46202, United States","Gerontology and Geriatric Medicine, Wake Forest School of Medicine , 475 Vine St, Winston-Salem, NC 27101, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Health Data Science, Indiana University School of Medicine , 340 W 10th St, Indianapolis, IN 46202, United States","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Gerontology and Geriatric Medicine, Wake Forest School of Medicine , 475 Vine St, Winston-Salem, NC 27101, United States","institution_ids":["https://openalex.org/I47251452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101825312","display_name":"Qianqian Song","orcid":"https://orcid.org/0000-0002-4455-5302"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianqian Song","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics , College of Medicine, , Gainesville, FL 32611, United States","University of Florida , College of Medicine, , Gainesville, FL 32611, United States"],"raw_orcid":"https://orcid.org/0000-0002-4455-5302","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics , College of Medicine, , Gainesville, FL 32611, United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , College of Medicine, , Gainesville, FL 32611, United States","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.2658,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.9275643,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6258184909820557},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4975793659687042},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.4779796004295349},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.46113646030426025},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42637547850608826},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3837236166000366},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3301737606525421},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25452131032943726},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15158069133758545},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.0923914909362793},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.0749455988407135}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6258184909820557},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4975793659687042},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.4779796004295349},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.46113646030426025},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42637547850608826},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3837236166000366},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3301737606525421},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25452131032943726},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15158069133758545},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.0923914909362793},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0749455988407135},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae388","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae388/58784630/bbae388.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39120644","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39120644","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11312371","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11312371","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11312371/pdf/bbae388.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/43825","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/43825","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae388","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae388","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae388/58784630/bbae388.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1628476732","display_name":null,"funder_award_id":"P30CA 082709","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2041820700","display_name":null,"funder_award_id":"R35GM151089","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2444646626","display_name":null,"funder_award_id":"R01LM013771","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3507073571","display_name":null,"funder_award_id":"R01LM013771","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5050751678","display_name":null,"funder_award_id":"R35GM151089","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401441420.pdf","grobid_xml":"https://content.openalex.org/works/W4401441420.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W66838807","https://openalex.org/W1966119405","https://openalex.org/W2042789810","https://openalex.org/W2123045220","https://openalex.org/W2130410032","https://openalex.org/W2169393322","https://openalex.org/W2214074259","https://openalex.org/W2346578521","https://openalex.org/W2417429787","https://openalex.org/W2616247523","https://openalex.org/W2792643794","https://openalex.org/W2794480084","https://openalex.org/W2800392236","https://openalex.org/W2808465642","https://openalex.org/W2897249806","https://openalex.org/W2958089299","https://openalex.org/W2962851944","https://openalex.org/W2979481854","https://openalex.org/W2994000519","https://openalex.org/W3011417339","https://openalex.org/W3032266082","https://openalex.org/W3084428871","https://openalex.org/W3099810371","https://openalex.org/W3102564565","https://openalex.org/W3106188259","https://openalex.org/W3108118546","https://openalex.org/W3126958162","https://openalex.org/W3165120573","https://openalex.org/W3187966659","https://openalex.org/W3190202966","https://openalex.org/W3211983881","https://openalex.org/W4200050714","https://openalex.org/W4200241957","https://openalex.org/W4206826076","https://openalex.org/W4220765701","https://openalex.org/W4226192560","https://openalex.org/W4281618613","https://openalex.org/W4290154117","https://openalex.org/W4302362633","https://openalex.org/W4311684329","https://openalex.org/W4312094047","https://openalex.org/W4313156423","https://openalex.org/W4320489547","https://openalex.org/W4384920712","https://openalex.org/W4385245566","https://openalex.org/W4385451479","https://openalex.org/W4386692444","https://openalex.org/W4389707912","https://openalex.org/W6848147563","https://openalex.org/W6849115850"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W2112883198"],"abstract_inverted_index":{"Recent":[0],"advancements":[1],"in":[2],"spatial":[3,17,39,47,53,73,107,121],"imaging":[4,48,122],"technologies":[5],"have":[6],"revolutionized":[7],"the":[8,20,133,156],"acquisition":[9],"of":[10,37,82,125,136],"high-resolution":[11],"multichannel":[12],"images,":[13],"gene":[14,60],"expressions,":[15],"and":[16,59,95],"locations":[18],"at":[19],"single-cell":[21],"level.":[22],"Our":[23],"study":[24],"introduces":[25],"xSiGra,":[26],"an":[27],"interpretable":[28,35,90,158],"graph-based":[29],"AI":[30],"model,":[31],"designed":[32],"to":[33,71,88],"elucidate":[34],"features":[36,45],"identified":[38,157],"cell":[40,74,99,163],"types,":[41,100],"by":[42,146,151],"harnessing":[43],"multimodal":[44],"from":[46,106],"technologies.":[49],"By":[50],"constructing":[51],"a":[52,79,128],"cellular":[54,140,176],"graph":[55,68],"with":[56,166],"immunohistology":[57],"images":[58],"expression":[61],"as":[62],"node":[63],"attributes,":[64],"xSiGra":[65,77,115,126,160],"employs":[66],"hybrid":[67],"transformer":[69],"models":[70],"delineate":[72],"types.":[75],"Additionally,":[76],"integrates":[78],"novel":[80],"variant":[81],"gradient-weighted":[83],"class":[84],"activation":[85],"mapping":[86],"component":[87],"uncover":[89],"features,":[91],"including":[92],"pivotal":[93],"genes":[94],"cells":[96],"for":[97],"various":[98],"thereby":[101],"facilitating":[102],"deeper":[103],"biological":[104],"insights":[105],"data.":[108],"Through":[109],"rigorous":[110],"benchmarking":[111],"against":[112],"existing":[113],"methods,":[114],"demonstrates":[116],"superior":[117],"performance":[118],"across":[119],"diverse":[120],"datasets.":[123],"Application":[124],"on":[127],"lung":[129],"tumor":[130,167],"slice":[131],"unveils":[132],"importance":[134],"score":[135],"cells,":[137,168],"illustrating":[138],"that":[139],"activity":[141],"is":[142],"not":[143],"solely":[144],"determined":[145],"itself":[147],"but":[148],"also":[149],"impacted":[150],"neighboring":[152],"cells.":[153],"Moreover,":[154],"leveraging":[155],"genes,":[159],"reveals":[161],"endothelial":[162],"subset":[164],"interacting":[165],"indicating":[169],"its":[170],"heterogeneous":[171],"underlying":[172],"mechanisms":[173],"within":[174],"complex":[175],"interactions.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
