{"id":"https://openalex.org/W4401412845","doi":"https://doi.org/10.1093/bib/bbae377","title":"DeePhafier: a phage lifestyle classifier using a multilayer self-attention neural network combining protein information","display_name":"DeePhafier: a phage lifestyle classifier using a multilayer self-attention neural network combining protein information","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401412845","doi":"https://doi.org/10.1093/bib/bbae377","pmid":"https://pubmed.ncbi.nlm.nih.gov/39110476"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae377","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bib/bbae377","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004933429","display_name":"Yan Miao","orcid":"https://orcid.org/0000-0001-7719-426X"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Miao","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China"],"raw_orcid":"https://orcid.org/0000-0001-7719-426X","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028798748","display_name":"Zhenyuan Sun","orcid":"https://orcid.org/0009-0004-7993-0194"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyuan Sun","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China"],"raw_orcid":"https://orcid.org/0009-0004-7993-0194","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100707569","display_name":"Chen Lin","orcid":"https://orcid.org/0000-0002-2275-997X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Lin","raw_affiliation_strings":["National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221 Xiangannan Road, Xiamen, 361102, Fujian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Data Science in Health and Medicine, Xiamen University , No. 4221 Xiangannan Road, Xiamen, 361102, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041065952","display_name":"Haoran Gu","orcid":"https://orcid.org/0009-0008-8611-6464"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Gu","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101304015","display_name":"Chenjing Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenjing Ma","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082213684","display_name":"Yingjian Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210156501","display_name":"First Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/05vy2sc54","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156501"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingjian Liang","raw_affiliation_strings":["Key Laboratory of Hepatosplenic Surgery , Ministry of Education, Department of General Surgery, , No. 23 Postal Street, Harbin, 150007, Heilongjiang, China","the First Affiliated Hospital of Harbin Medical University , Ministry of Education, Department of General Surgery, , No. 23 Postal Street, Harbin, 150007, Heilongjiang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Hepatosplenic Surgery , Ministry of Education, Department of General Surgery, , No. 23 Postal Street, Harbin, 150007, Heilongjiang, China","institution_ids":["https://openalex.org/I1327237609"]},{"raw_affiliation_string":"the First Affiliated Hospital of Harbin Medical University , Ministry of Education, Department of General Surgery, , No. 23 Postal Street, Harbin, 150007, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210156501"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100649978","display_name":"Guohua Wang","orcid":"https://orcid.org/0000-0001-7381-2374"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohua Wang","raw_affiliation_strings":["College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China"],"raw_orcid":"https://orcid.org/0000-0001-7381-2374","affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University , No. 26 Hexing Road, Harbin, 150040, Heilongjiang, China","institution_ids":["https://openalex.org/I47689461"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.2316,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.8034188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.7358061075210571},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6461323499679565},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6392204761505127},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5704909563064575},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3582778573036194},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35236501693725586}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.7358061075210571},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6461323499679565},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6392204761505127},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5704909563064575},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3582778573036194},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35236501693725586}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae377","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39110476","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39110476","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11304974","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11304974","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11304974/pdf/bbae377.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae377","pdf_url":null,"source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4239478081","display_name":null,"funder_award_id":"62301139","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G78605367","display_name":null,"funder_award_id":"62301139","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G870551797","display_name":null,"funder_award_id":"62225109","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1923728284","https://openalex.org/W1982265452","https://openalex.org/W1998636592","https://openalex.org/W2016944307","https://openalex.org/W2036741396","https://openalex.org/W2055043387","https://openalex.org/W2069689025","https://openalex.org/W2137044495","https://openalex.org/W2145351317","https://openalex.org/W2145370398","https://openalex.org/W2146628513","https://openalex.org/W2155194485","https://openalex.org/W2158714788","https://openalex.org/W2168714236","https://openalex.org/W2610214149","https://openalex.org/W2734399491","https://openalex.org/W2735062779","https://openalex.org/W2919358988","https://openalex.org/W3003110834","https://openalex.org/W3027189436","https://openalex.org/W3085139254","https://openalex.org/W3110341782","https://openalex.org/W3112703609","https://openalex.org/W3165871279","https://openalex.org/W3197879762","https://openalex.org/W3202031242","https://openalex.org/W4200505767","https://openalex.org/W4241727697","https://openalex.org/W4283450732","https://openalex.org/W4293173874","https://openalex.org/W4295122555","https://openalex.org/W4319865654","https://openalex.org/W4327545557","https://openalex.org/W4380986103","https://openalex.org/W4386083644","https://openalex.org/W6787108163","https://openalex.org/W6795842910","https://openalex.org/W6849924456"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W2033914206"],"abstract_inverted_index":{"Bacteriophages":[0],"are":[1,9,56],"the":[2,10,25,33,37,51,110,118],"viruses":[3],"that":[4],"infect":[5],"bacterial":[6],"cells.":[7],"They":[8],"most":[11],"diverse":[12],"biological":[13],"entities":[14],"on":[15,88,130],"earth":[16],"and":[17,36,42,103,121],"play":[18],"important":[19],"roles":[20],"in":[21],"microbiome.":[22],"According":[23],"to":[24,74,84],"phage":[26,61,89],"lifestyle,":[27],"phages":[28,35,44],"can":[29],"be":[30],"divided":[31],"into":[32],"virulent":[34,41],"temperate":[38,43],"phages.":[39],"Classifying":[40],"is":[45,82,133],"crucial":[46],"for":[47,60,138],"further":[48],"understanding":[49],"of":[50,109,128],"phage-host":[52],"interactions.":[53],"Although":[54],"there":[55],"several":[57,93],"methods":[58],"designed":[59],"lifestyle":[62],"classification,":[63],"they":[64],"merely":[65],"either":[66],"consider":[67],"sequence":[68],"features":[69,108],"or":[70],"gene":[71],"features,":[72],"leading":[73],"low":[75],"accuracy.":[76],"A":[77],"new":[78],"computational":[79],"method,":[80],"DeePhafier,":[81],"proposed":[83],"improve":[85],"classification":[86,119],"performance":[87],"lifestyle.":[90],"Built":[91],"by":[92,106],"multilayer":[94],"self-attention":[95,100],"neural":[96,101],"networks,":[97],"a":[98],"global":[99],"network,":[102],"being":[104],"combined":[105],"protein":[107],"Position":[111],"Specific":[112],"Scoring":[113],"Matrix":[114],"matrix,":[115],"DeePhafier":[116,129],"improves":[117],"accuracy":[120,127],"outperforms":[122],"two":[123],"benchmark":[124],"methods.":[125],"The":[126],"five-fold":[131],"cross-validation":[132],"as":[134,136],"high":[135],"87.54%":[137],"sequences":[139],"with":[140],"length":[141],">2000bp.":[142]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
