{"id":"https://openalex.org/W4401200561","doi":"https://doi.org/10.1093/bib/bbae372","title":"Solving genomic puzzles: computational methods for metagenomic binning","display_name":"Solving genomic puzzles: computational methods for metagenomic binning","publication_year":2024,"publication_date":"2024-07-25","ids":{"openalex":"https://openalex.org/W4401200561","doi":"https://doi.org/10.1093/bib/bbae372","pmid":"https://pubmed.ncbi.nlm.nih.gov/39082646"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae372","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019627096","display_name":"Vijini Mallawaarachchi","orcid":"https://orcid.org/0000-0002-2651-8719"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Vijini Mallawaarachchi","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia"],"raw_orcid":"https://orcid.org/0000-0002-2651-8719","affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039351950","display_name":"Anuradha Wickramarachchi","orcid":"https://orcid.org/0000-0003-4160-5965"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anuradha Wickramarachchi","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia"],"raw_orcid":"https://orcid.org/0000-0003-4160-5965","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102768105","display_name":"Hansheng Xue","orcid":"https://orcid.org/0000-0002-5263-4844"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hansheng Xue","raw_affiliation_strings":["School of Computing, National University of Singapore , Singapore 119077, Singapore"],"raw_orcid":"https://orcid.org/0000-0002-5263-4844","affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore , Singapore 119077, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030692926","display_name":"Bhavya Papudeshi","orcid":"https://orcid.org/0000-0001-5359-3100"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Bhavya Papudeshi","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia"],"raw_orcid":"https://orcid.org/0000-0001-5359-3100","affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026459851","display_name":"Susanna R. Grigson","orcid":"https://orcid.org/0000-0003-4738-3451"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Susanna R Grigson","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia"],"raw_orcid":"https://orcid.org/0000-0003-4738-3451","affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038337573","display_name":"George Bouras","orcid":"https://orcid.org/0000-0002-5885-4186"},"institutions":[{"id":"https://openalex.org/I4210089491","display_name":"Basil Hetzel Institute","ror":"https://ror.org/008b3br98","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210089491"]},{"id":"https://openalex.org/I4210137740","display_name":"South Australian Health and Medical Research Institute","ror":"https://ror.org/03e3kts03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I4210137740"]},{"id":"https://openalex.org/I4392738059","display_name":"Central Adelaide Local Health Network","ror":"https://ror.org/02r40rn49","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4392738059"]},{"id":"https://openalex.org/I5681781","display_name":"The University of Adelaide","ror":"https://ror.org/00892tw58","country_code":"AU","type":"education","lineage":["https://openalex.org/I5681781"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"George Bouras","raw_affiliation_strings":["Adelaide Medical School , Faculty of Health and Medical Sciences, , Adelaide, SA 5005, Australia","The Department of Surgery\u2014Otolaryngology Head and Neck Surgery, University of Adelaide and the Basil Hetzel Institute for Translational Health Research, Central Adelaide Local Health Network , Adelaide, SA 5011, Australia","The University of Adelaide , Faculty of Health and Medical Sciences, , Adelaide, SA 5005, Australia","Adelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA 5005, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5885-4186","affiliations":[{"raw_affiliation_string":"Adelaide Medical School , Faculty of Health and Medical Sciences, , Adelaide, SA 5005, Australia","institution_ids":["https://openalex.org/I5681781","https://openalex.org/I4210137740"]},{"raw_affiliation_string":"The Department of Surgery\u2014Otolaryngology Head and Neck Surgery, University of Adelaide and the Basil Hetzel Institute for Translational Health Research, Central Adelaide Local Health Network , Adelaide, SA 5011, Australia","institution_ids":["https://openalex.org/I4210089491","https://openalex.org/I5681781","https://openalex.org/I4392738059"]},{"raw_affiliation_string":"The University of Adelaide , Faculty of Health and Medical Sciences, , Adelaide, SA 5005, Australia","institution_ids":["https://openalex.org/I5681781"]},{"raw_affiliation_string":"Adelaide Medical School, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, SA 5005, Australia","institution_ids":["https://openalex.org/I5681781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081807426","display_name":"Rosa E. Prahl","orcid":"https://orcid.org/0000-0003-1243-9881"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Rosa E Prahl","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia"],"raw_orcid":"https://orcid.org/0000-0003-1243-9881","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000858044","display_name":"Anubhav Kaphle","orcid":"https://orcid.org/0000-0002-1972-6819"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Anubhav Kaphle","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia"],"raw_orcid":"https://orcid.org/0000-0002-1972-6819","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067533766","display_name":"Andrey Verich","orcid":"https://orcid.org/0000-0002-3226-812X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrey Verich","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","The Kirby Institute, The University of New South Wales , Randwick, Sydney, NSW 2052, Australia"],"raw_orcid":"https://orcid.org/0000-0002-3226-812X","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]},{"raw_affiliation_string":"The Kirby Institute, The University of New South Wales , Randwick, Sydney, NSW 2052, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010503355","display_name":"Berenice Talamantes-Becerra","orcid":"https://orcid.org/0000-0001-6952-5276"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Berenice Talamantes-Becerra","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia"],"raw_orcid":"https://orcid.org/0000-0001-6952-5276","affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation (CSIRO) , Westmead, NSW 2145, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051908367","display_name":"Elizabeth A. Dinsdale","orcid":"https://orcid.org/0000-0002-2177-203X"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Elizabeth A Dinsdale","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia"],"raw_orcid":"https://orcid.org/0000-0002-2177-203X","affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036802114","display_name":"Robert A. Edwards","orcid":"https://orcid.org/0000-0001-8383-8949"},"institutions":[{"id":"https://openalex.org/I169541294","display_name":"Flinders University","ror":"https://ror.org/01kpzv902","country_code":"AU","type":"education","lineage":["https://openalex.org/I169541294"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Robert A Edwards","raw_affiliation_strings":["Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8383-8949","affiliations":[{"raw_affiliation_string":"Flinders Accelerator for Microbiome Exploration, College of Science and Engineering, Flinders University , Adelaide, SA 5042, Australia","institution_ids":["https://openalex.org/I169541294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":3.3955,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.93155177,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9778708219528198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.502994954586029},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.49761131405830383},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48547127842903137},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4842550456523895},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4277806878089905},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4134325385093689},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36500632762908936},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.33819302916526794},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3323116898536682},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09584292769432068},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09042608737945557},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06588050723075867}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9778708219528198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.502994954586029},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.49761131405830383},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48547127842903137},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4842550456523895},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4277806878089905},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4134325385093689},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36500632762908936},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.33819302916526794},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3323116898536682},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09584292769432068},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09042608737945557},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06588050723075867},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae372","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39082646","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39082646","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11289683","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11289683","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11289683/pdf/bbae372.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae372","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae372","pdf_url":"https://academic.oup.com/bib/article-pdf/25/5/bbae372/58745083/bbae372.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7400000095367432,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G3349938402","display_name":null,"funder_award_id":"RC2DK116713","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G510100752","display_name":null,"funder_award_id":"RC2DK116713","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G5211754784","display_name":"Quantitative Metagenomics","funder_award_id":"DP220102915","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"},{"id":"https://openalex.org/G7238246478","display_name":null,"funder_award_id":"RC2 DK116713","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320320431","display_name":"Australian National University","ror":"https://ror.org/019wvm592"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401200561.pdf"},"referenced_works_count":151,"referenced_works":["https://openalex.org/W1528357204","https://openalex.org/W1539550196","https://openalex.org/W1562379206","https://openalex.org/W1583837637","https://openalex.org/W1584790813","https://openalex.org/W1878521557","https://openalex.org/W1958058086","https://openalex.org/W1963979462","https://openalex.org/W1966501953","https://openalex.org/W1966711026","https://openalex.org/W1966912927","https://openalex.org/W1973950074","https://openalex.org/W1984236772","https://openalex.org/W1997246534","https://openalex.org/W1997673861","https://openalex.org/W2001561488","https://openalex.org/W2013935032","https://openalex.org/W2018567038","https://openalex.org/W2034285706","https://openalex.org/W2037069087","https://openalex.org/W2038184529","https://openalex.org/W2045373434","https://openalex.org/W2048721314","https://openalex.org/W2066266675","https://openalex.org/W2080347313","https://openalex.org/W2082203850","https://openalex.org/W2089859322","https://openalex.org/W2096143955","https://openalex.org/W2103901746","https://openalex.org/W2107772251","https://openalex.org/W2110417468","https://openalex.org/W2112364185","https://openalex.org/W2113601822","https://openalex.org/W2113679889","https://openalex.org/W2114133992","https://openalex.org/W2115026474","https://openalex.org/W2120267228","https://openalex.org/W2120902911","https://openalex.org/W2121291798","https://openalex.org/W2124637227","https://openalex.org/W2125826054","https://openalex.org/W2129103781","https://openalex.org/W2131342905","https://openalex.org/W2134800079","https://openalex.org/W2137604316","https://openalex.org/W2137896807","https://openalex.org/W2140211206","https://openalex.org/W2141202455","https://openalex.org/W2141677147","https://openalex.org/W2143777131","https://openalex.org/W2146281049","https://openalex.org/W2147783737","https://openalex.org/W2150208009","https://openalex.org/W2155329354","https://openalex.org/W2155628349","https://openalex.org/W2155680168","https://openalex.org/W2156995746","https://openalex.org/W2162039942","https://openalex.org/W2162210683","https://openalex.org/W2163166295","https://openalex.org/W2163415309","https://openalex.org/W2165312548","https://openalex.org/W2171587844","https://openalex.org/W2173732482","https://openalex.org/W2175526948","https://openalex.org/W2194399613","https://openalex.org/W2294353708","https://openalex.org/W2337508844","https://openalex.org/W2341364667","https://openalex.org/W2515836512","https://openalex.org/W2550586733","https://openalex.org/W2559838906","https://openalex.org/W2586669868","https://openalex.org/W2587321626","https://openalex.org/W2599417231","https://openalex.org/W2610929625","https://openalex.org/W2754579667","https://openalex.org/W2755111416","https://openalex.org/W2771008898","https://openalex.org/W2771499133","https://openalex.org/W2773939681","https://openalex.org/W2778318416","https://openalex.org/W2791465597","https://openalex.org/W2801626568","https://openalex.org/W2807674901","https://openalex.org/W2810538097","https://openalex.org/W2938394675","https://openalex.org/W2938828179","https://openalex.org/W2938868597","https://openalex.org/W2950464960","https://openalex.org/W2950489962","https://openalex.org/W2950513687","https://openalex.org/W2950550329","https://openalex.org/W2950785362","https://openalex.org/W2952204926","https://openalex.org/W3011335316","https://openalex.org/W3019706413","https://openalex.org/W3043405618","https://openalex.org/W3046109898","https://openalex.org/W3091506611","https://openalex.org/W3100348855","https://openalex.org/W3120084484","https://openalex.org/W3135822094","https://openalex.org/W3141776272","https://openalex.org/W3144260862","https://openalex.org/W3151608695","https://openalex.org/W3159917788","https://openalex.org/W3174606753","https://openalex.org/W3175984691","https://openalex.org/W3186559574","https://openalex.org/W3186962270","https://openalex.org/W3193392453","https://openalex.org/W3212976670","https://openalex.org/W3217463608","https://openalex.org/W4220807255","https://openalex.org/W4221065320","https://openalex.org/W4221079230","https://openalex.org/W4225007447","https://openalex.org/W4225258284","https://openalex.org/W4225270865","https://openalex.org/W4225567904","https://openalex.org/W4226247874","https://openalex.org/W4230376134","https://openalex.org/W4243280581","https://openalex.org/W4283809266","https://openalex.org/W4285042422","https://openalex.org/W4285125166","https://openalex.org/W4285404699","https://openalex.org/W4292178604","https://openalex.org/W4306173507","https://openalex.org/W4308616455","https://openalex.org/W4308771431","https://openalex.org/W4311607405","https://openalex.org/W4313648386","https://openalex.org/W4318612108","https://openalex.org/W4328053400","https://openalex.org/W4376139074","https://openalex.org/W4377942519","https://openalex.org/W4382537366","https://openalex.org/W4382631636","https://openalex.org/W4385302529","https://openalex.org/W4385520234","https://openalex.org/W4386949775","https://openalex.org/W4387846514","https://openalex.org/W4390728884","https://openalex.org/W4390935732","https://openalex.org/W4392645738","https://openalex.org/W4394725142","https://openalex.org/W6782684633","https://openalex.org/W6811060470","https://openalex.org/W6839483719"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W4388282505","https://openalex.org/W3198631238","https://openalex.org/W4255657129"],"abstract_inverted_index":{"Metagenomics":[0],"involves":[1],"the":[2,26,45,68,77,118,121,130],"study":[3,88],"of":[4,11,19,31,70,79,83,103,126,132],"genetic":[5],"material":[6],"obtained":[7],"directly":[8],"from":[9],"communities":[10],"microorganisms":[12,84],"living":[13],"in":[14],"natural":[15],"environments.":[16],"The":[17],"field":[18,131],"metagenomics":[20],"has":[21],"provided":[22],"valuable":[23],"insights":[24],"into":[25,47],"structure,":[27],"diversity":[28],"and":[29,40,91,99,106,110,124],"ecology":[30],"microbial":[32,94],"communities.":[33,95],"Once":[34],"an":[35],"environmental":[36],"sample":[37],"is":[38],"sequenced":[39],"processed,":[41],"metagenomic":[42,71,104],"binning":[43,105],"clusters":[44],"sequences":[46],"bins":[48],"representing":[49],"different":[50,101,107],"taxonomic":[51],"groups":[52],"such":[53],"as":[54],"species,":[55],"genera,":[56],"or":[57],"higher":[58],"levels.":[59],"Several":[60],"computational":[61],"tools":[62,74],"have":[63,75],"been":[64],"developed":[65],"to":[66,87],"automate":[67],"process":[69],"binning.":[72],"These":[73],"enabled":[76],"recovery":[78],"novel":[80],"draft":[81],"genomes":[82],"allowing":[85],"us":[86],"their":[89],"behaviors":[90],"functions":[92],"within":[93,129],"This":[96],"review":[97,119],"classifies":[98],"analyzes":[100],"approaches":[102],"refinement,":[108],"visualization,":[109],"evaluation":[111],"techniques":[112],"used":[113],"by":[114],"these":[115],"methods.":[116],"Furthermore,":[117],"highlights":[120],"current":[122],"challenges":[123],"areas":[125],"improvement":[127],"present":[128],"research.":[133]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
