{"id":"https://openalex.org/W4400344126","doi":"https://doi.org/10.1093/bib/bbae307","title":"Antibody design using deep learning: from sequence and structure design to affinity maturation","display_name":"Antibody design using deep learning: from sequence and structure design to affinity maturation","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4400344126","doi":"https://doi.org/10.1093/bib/bbae307","pmid":"https://pubmed.ncbi.nlm.nih.gov/38960409"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae307","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae307","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae307/58425660/bbae307.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae307/58425660/bbae307.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053987889","display_name":"Sara Joubbi","orcid":"https://orcid.org/0009-0002-1079-7204"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]},{"id":"https://openalex.org/I4210121412","display_name":"Toscana Life Sciences","ror":"https://ror.org/01xze8742","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121412"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sara Joubbi","raw_affiliation_strings":["Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","institution_ids":["https://openalex.org/I4210121412"]},{"raw_affiliation_string":"Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010923663","display_name":"Alessio Micheli","orcid":"https://orcid.org/0000-0001-5764-5238"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessio Micheli","raw_affiliation_strings":["Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038730637","display_name":"Paolo Milazzo","orcid":"https://orcid.org/0000-0002-7309-6424"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Milazzo","raw_affiliation_strings":["Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Pisa , Largo B. Pontecorvo, 3, 56127, Pisa, Italy","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069198387","display_name":"Giuseppe Maccari","orcid":"https://orcid.org/0000-0002-2894-3583"},"institutions":[{"id":"https://openalex.org/I4210121412","display_name":"Toscana Life Sciences","ror":"https://ror.org/01xze8742","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121412"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Maccari","raw_affiliation_strings":["Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","institution_ids":["https://openalex.org/I4210121412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065846066","display_name":"Giorgio Ciano","orcid":"https://orcid.org/0000-0003-2863-4315"},"institutions":[{"id":"https://openalex.org/I4210121412","display_name":"Toscana Life Sciences","ror":"https://ror.org/01xze8742","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121412"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giorgio Ciano","raw_affiliation_strings":["Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","institution_ids":["https://openalex.org/I4210121412"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090505273","display_name":"Dario Cardamone","orcid":"https://orcid.org/0000-0002-4006-5277"},"institutions":[{"id":"https://openalex.org/I4210121412","display_name":"Toscana Life Sciences","ror":"https://ror.org/01xze8742","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121412"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Dario Cardamone","raw_affiliation_strings":["Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","institution_ids":["https://openalex.org/I4210121412"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080423798","display_name":"Duccio Medini","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121412","display_name":"Toscana Life Sciences","ror":"https://ror.org/01xze8742","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210121412"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Duccio Medini","raw_affiliation_strings":["Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data Science for Health (DaScH) Lab, Fondazione Toscana Life Sciences , Via Fiorentina, 1, 53100, Siena, Italy","institution_ids":["https://openalex.org/I4210121412"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":17.9254,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.99583379,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.7956397533416748},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6728755831718445},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6386341452598572},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5907628536224365},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5016412734985352},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.4448273479938507},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4232247471809387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38968512415885925},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2512931823730469},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20636752247810364},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.19611814618110657},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10404080152511597}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.7956397533416748},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6728755831718445},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6386341452598572},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5907628536224365},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5016412734985352},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.4448273479938507},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4232247471809387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38968512415885925},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2512931823730469},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20636752247810364},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.19611814618110657},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10404080152511597},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae307","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae307","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae307/58425660/bbae307.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38960409","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38960409","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11221890","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11221890","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11221890/pdf/bbae307.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:arpi.unipi.it:11568/1271688","is_oa":true,"landing_page_url":"https://academic.oup.com/bib/article/25/4/bbae307/7705535","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae307","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae307","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae307/58425660/bbae307.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1115267702","display_name":null,"funder_award_id":"ECS00000017","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7009277087","display_name":null,"funder_award_id":"PNRR ECS00000017","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332815","display_name":"Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400344126.pdf"},"referenced_works_count":194,"referenced_works":["https://openalex.org/W574962919","https://openalex.org/W1019830208","https://openalex.org/W1030883578","https://openalex.org/W1501531009","https://openalex.org/W1583837637","https://openalex.org/W1607931568","https://openalex.org/W1956208665","https://openalex.org/W1967851963","https://openalex.org/W1968319881","https://openalex.org/W1993046136","https://openalex.org/W2015326011","https://openalex.org/W2020368956","https://openalex.org/W2027486315","https://openalex.org/W2055147198","https://openalex.org/W2069068211","https://openalex.org/W2076048958","https://openalex.org/W2088449846","https://openalex.org/W2092285329","https://openalex.org/W2098210920","https://openalex.org/W2105360462","https://openalex.org/W2106210646","https://openalex.org/W2110505462","https://openalex.org/W2116341502","https://openalex.org/W2124008432","https://openalex.org/W2124981562","https://openalex.org/W2128674962","https://openalex.org/W2157807259","https://openalex.org/W2158945625","https://openalex.org/W2163174206","https://openalex.org/W2169610187","https://openalex.org/W2171249995","https://openalex.org/W2283896596","https://openalex.org/W2323929490","https://openalex.org/W2398478519","https://openalex.org/W2474661075","https://openalex.org/W2508425869","https://openalex.org/W2509135402","https://openalex.org/W2554576124","https://openalex.org/W2606439133","https://openalex.org/W2612690371","https://openalex.org/W2724786424","https://openalex.org/W2735897797","https://openalex.org/W2769445535","https://openalex.org/W2785947426","https://openalex.org/W2801127413","https://openalex.org/W2891474722","https://openalex.org/W2892113269","https://openalex.org/W2893435209","https://openalex.org/W2896457183","https://openalex.org/W2898389621","https://openalex.org/W2900437486","https://openalex.org/W2900936384","https://openalex.org/W2901953282","https://openalex.org/W2902812092","https://openalex.org/W2907492528","https://openalex.org/W2916145674","https://openalex.org/W2917761380","https://openalex.org/W2919115771","https://openalex.org/W2921485464","https://openalex.org/W2944245644","https://openalex.org/W2945027804","https://openalex.org/W2949223833","https://openalex.org/W2950118240","https://openalex.org/W2951119766","https://openalex.org/W2953103783","https://openalex.org/W2953176058","https://openalex.org/W2960616159","https://openalex.org/W2961662609","https://openalex.org/W2970959293","https://openalex.org/W2974982237","https://openalex.org/W2980681402","https://openalex.org/W2992752586","https://openalex.org/W2997785591","https://openalex.org/W3007500173","https://openalex.org/W3008570337","https://openalex.org/W3008606616","https://openalex.org/W3009890745","https://openalex.org/W3016492430","https://openalex.org/W3022788428","https://openalex.org/W3049166744","https://openalex.org/W3082498841","https://openalex.org/W3107250304","https://openalex.org/W3128461460","https://openalex.org/W3135883064","https://openalex.org/W3139404958","https://openalex.org/W3144701084","https://openalex.org/W3146944767","https://openalex.org/W3150322046","https://openalex.org/W3152894225","https://openalex.org/W3156522942","https://openalex.org/W3157286395","https://openalex.org/W3166142427","https://openalex.org/W3166396011","https://openalex.org/W3167731532","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3183475563","https://openalex.org/W3186179742","https://openalex.org/W3197596721","https://openalex.org/W3202105508","https://openalex.org/W3205745483","https://openalex.org/W3206187363","https://openalex.org/W3208583661","https://openalex.org/W3214417031","https://openalex.org/W3214596602","https://openalex.org/W3214891123","https://openalex.org/W3216341763","https://openalex.org/W4200221847","https://openalex.org/W4200635416","https://openalex.org/W4210257598","https://openalex.org/W4210520848","https://openalex.org/W4211196614","https://openalex.org/W4213244137","https://openalex.org/W4214886481","https://openalex.org/W4214933845","https://openalex.org/W4220997534","https://openalex.org/W4221160819","https://openalex.org/W4225008297","https://openalex.org/W4225321559","https://openalex.org/W4226108318","https://openalex.org/W4280625391","https://openalex.org/W4281781228","https://openalex.org/W4281850946","https://openalex.org/W4283068487","https://openalex.org/W4283588088","https://openalex.org/W4285010209","https://openalex.org/W4285386587","https://openalex.org/W4288066876","https://openalex.org/W4289764781","https://openalex.org/W4296364669","https://openalex.org/W4307166035","https://openalex.org/W4309228383","https://openalex.org/W4310633096","https://openalex.org/W4310875677","https://openalex.org/W4312209560","https://openalex.org/W4317661995","https://openalex.org/W4317679756","https://openalex.org/W4319442922","https://openalex.org/W4320508805","https://openalex.org/W4321484068","https://openalex.org/W4327550249","https://openalex.org/W4362510910","https://openalex.org/W4366083959","https://openalex.org/W4366279959","https://openalex.org/W4366998330","https://openalex.org/W4367049161","https://openalex.org/W4377710512","https://openalex.org/W4378364238","https://openalex.org/W4378714914","https://openalex.org/W4379089699","https://openalex.org/W4382866989","https://openalex.org/W4383905197","https://openalex.org/W4383957026","https://openalex.org/W4385212483","https://openalex.org/W4385781690","https://openalex.org/W4385944516","https://openalex.org/W4387043437","https://openalex.org/W4388020856","https://openalex.org/W4388024559","https://openalex.org/W4388735138","https://openalex.org/W4388923662","https://openalex.org/W4389964467","https://openalex.org/W4390245367","https://openalex.org/W4391432181","https://openalex.org/W4392563999","https://openalex.org/W4393213467","https://openalex.org/W4396721167","https://openalex.org/W6739901393","https://openalex.org/W6755207826","https://openalex.org/W6766917467","https://openalex.org/W6787696944","https://openalex.org/W6790561777","https://openalex.org/W6791353385","https://openalex.org/W6793010855","https://openalex.org/W6794315554","https://openalex.org/W6802033083","https://openalex.org/W6803102855","https://openalex.org/W6805005235","https://openalex.org/W6807249246","https://openalex.org/W6810249204","https://openalex.org/W6838400046","https://openalex.org/W6839758910","https://openalex.org/W6845934434","https://openalex.org/W6846473853","https://openalex.org/W6847096060","https://openalex.org/W6847563331","https://openalex.org/W6849544546","https://openalex.org/W6851007496","https://openalex.org/W6852575741","https://openalex.org/W6855706027","https://openalex.org/W6855775727","https://openalex.org/W6857612701","https://openalex.org/W6861624965","https://openalex.org/W6862962027"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W2127264463","https://openalex.org/W2764191054"],"abstract_inverted_index":{"Deep":[0],"learning":[1,42],"has":[2],"achieved":[3],"impressive":[4],"results":[5],"in":[6,22,52,72,75,99],"various":[7,110],"fields":[8],"such":[9,112],"as":[10,113],"computer":[11],"vision":[12],"and":[13,33,55,74,87,102,119],"natural":[14],"language":[15],"processing,":[16],"making":[17],"it":[18,51],"a":[19],"powerful":[20],"tool":[21],"biology.":[23],"Its":[24],"applications":[25,43],"now":[26],"encompass":[27],"cellular":[28],"image":[29],"classification,":[30],"genomic":[31],"studies":[32],"drug":[34,37],"discovery.":[35],"While":[36],"development":[38,56,90],"traditionally":[39],"focused":[40],"deep":[41],"on":[44,106],"small":[45],"molecules,":[46,59],"recent":[47],"innovations":[48],"have":[49,63],"incorporated":[50],"the":[53],"discovery":[54],"of":[57],"biological":[58],"particularly":[60],"antibodies.":[61,107],"Researchers":[62],"devised":[64],"novel":[65],"techniques":[66],"to":[67],"streamline":[68],"antibody":[69,89],"development,":[70],"combining":[71],"vitro":[73],"silico":[76],"methods.":[77],"In":[78],"particular,":[79],"computational":[80],"power":[81],"expedites":[82],"lead":[83],"candidate":[84],"generation,":[85],"scaling":[86],"potential":[88],"against":[91],"complex":[92],"antigens.":[93],"This":[94,108],"survey":[95],"highlights":[96],"significant":[97],"advancements":[98],"protein":[100],"design":[101],"optimization,":[103],"specifically":[104],"focusing":[105],"includes":[109],"aspects":[111],"design,":[114],"folding,":[115],"antibody-antigen":[116],"interactions":[117],"docking":[118],"affinity":[120],"maturation.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
