{"id":"https://openalex.org/W4399836196","doi":"https://doi.org/10.1093/bib/bbae284","title":"Morphological profiling for drug discovery in the era of deep learning","display_name":"Morphological profiling for drug discovery in the era of deep learning","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4399836196","doi":"https://doi.org/10.1093/bib/bbae284","pmid":"https://pubmed.ncbi.nlm.nih.gov/38886164"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae284","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae284","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae284/58244094/bbae284.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae284/58244094/bbae284.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043305377","display_name":"Qiaosi Tang","orcid":"https://orcid.org/0000-0002-6726-8728"},"institutions":[{"id":"https://openalex.org/I4210102664","display_name":"Enzo Life Sciences (United States)","ror":"https://ror.org/01d7h6313","country_code":"US","type":"company","lineage":["https://openalex.org/I4210102664"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qiaosi Tang","raw_affiliation_strings":["Calico Life Sciences , South San Francisco, CA 94080 , United States"],"raw_orcid":"https://orcid.org/0000-0002-6726-8728","affiliations":[{"raw_affiliation_string":"Calico Life Sciences , South San Francisco, CA 94080 , United States","institution_ids":["https://openalex.org/I4210102664"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001274789","display_name":"Ranjala Ratnayake","orcid":"https://orcid.org/0000-0002-5980-2070"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ranjala Ratnayake","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060788188","display_name":"Gustavo Seabra","orcid":"https://orcid.org/0000-0002-1303-4483"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gustavo Seabra","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0002-1303-4483","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021681759","display_name":"Zhe Jiang","orcid":"https://orcid.org/0000-0002-3576-6976"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhe Jiang","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007109351","display_name":"Ruogu Fang","orcid":"https://orcid.org/0000-0003-3980-3532"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruogu Fang","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","J. Crayton Pruitt Family Department of Biomedical Engineering , Herbert Wertheim College of Engineering, , Gainesville, FL 32611 , United States","University of Florida , Herbert Wertheim College of Engineering, , Gainesville, FL 32611 , United States","J. Crayton Pruitt Family Department of Biomedical Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, FL 32611, United States"],"raw_orcid":"https://orcid.org/0000-0003-3980-3532","affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"J. Crayton Pruitt Family Department of Biomedical Engineering , Herbert Wertheim College of Engineering, , Gainesville, FL 32611 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Herbert Wertheim College of Engineering, , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"J. Crayton Pruitt Family Department of Biomedical Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, FL 32611, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020872519","display_name":"Lina Cui","orcid":"https://orcid.org/0000-0002-8149-5206"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lina Cui","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0002-8149-5206","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040683433","display_name":"Yousong Ding","orcid":"https://orcid.org/0000-0001-8610-0659"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yousong Ding","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0001-8610-0659","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091769289","display_name":"Tamer Kahveci","orcid":"https://orcid.org/0000-0002-4403-8612"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tamer Kahveci","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030951014","display_name":"Jiang Bian","orcid":"https://orcid.org/0000-0002-2238-5429"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiang Bian","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics , College of Medicine, , Gainesville, FL 32611 , United States","University of Florida , College of Medicine, , Gainesville, FL 32611 , United States","Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL 32611, United States"],"raw_orcid":"https://orcid.org/0000-0002-2238-5429","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics , College of Medicine, , Gainesville, FL 32611 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , College of Medicine, , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I94062374","https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL 32611, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100398928","display_name":"Chenglong Li","orcid":"https://orcid.org/0000-0001-9460-3168"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenglong Li","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0001-9460-3168","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044244955","display_name":"Hendrik Luesch","orcid":"https://orcid.org/0000-0002-4091-7492"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hendrik Luesch","raw_affiliation_strings":["Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0002-4091-7492","affiliations":[{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100382119","display_name":"Yanjun Li","orcid":"https://orcid.org/0000-0002-6277-4189"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanjun Li","raw_affiliation_strings":["Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States"],"raw_orcid":"https://orcid.org/0000-0002-6277-4189","affiliations":[{"raw_affiliation_string":"Department of Computer & Information Science & Engineering, University of Florida , Gainesville, FL 32611 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":[]},{"raw_affiliation_string":"University of Florida , Center for Natural Products, Drug Discovery and Development, , Gainesville, FL 32610 , United States","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Department of Medicinal Chemistry, Center for Natural Products, Drug Discovery and Development, University of Florida, Gainesville, FL 32610, United States","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5043305377"],"corresponding_institution_ids":["https://openalex.org/I4210102664"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":22.021,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.9949471,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.8212974071502686},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.6694013476371765},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4720768928527832},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.444657564163208},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44081738591194153},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3887571692466736},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3854740858078003},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3719881772994995},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20344606041908264},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1911046802997589},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14504826068878174}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.8212974071502686},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.6694013476371765},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4720768928527832},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.444657564163208},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44081738591194153},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3887571692466736},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3854740858078003},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3719881772994995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20344606041908264},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1911046802997589},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14504826068878174},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae284","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae284","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae284/58244094/bbae284.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38886164","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38886164","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11182685","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11182685","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11182685/pdf/bbae284.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae284","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae284","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae284/58244094/bbae284.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4099999964237213,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2554551371","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320332659","funder_display_name":"University of Florida Health"},{"id":"https://openalex.org/G4286077485","display_name":null,"funder_award_id":"UFS-202307","funder_id":"https://openalex.org/F4320337979","funder_display_name":"Cancer Center, University of Florida Health"},{"id":"https://openalex.org/G4345550237","display_name":null,"funder_award_id":"R01CA172310","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4476558940","display_name":null,"funder_award_id":"R01AG076234","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5109194196","display_name":null,"funder_award_id":"R01CA212403","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6037199653","display_name":null,"funder_award_id":"RF1AG077820","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6703471902","display_name":null,"funder_award_id":"R01CA172310","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7211054485","display_name":null,"funder_award_id":"RM1GM145426","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7211153767","display_name":null,"funder_award_id":"UL1TR001427","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8049356674","display_name":null,"funder_award_id":"R01CA212403","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8288393817","display_name":null,"funder_award_id":"R35GM128742","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8498580294","display_name":null,"funder_award_id":"R35GM128742","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G964658624","display_name":null,"funder_award_id":"RM1GM145426","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320310009","display_name":"University of Florida","ror":"https://ror.org/02y3ad647"},{"id":"https://openalex.org/F4320314997","display_name":"Strong","ror":"https://ror.org/041vyzr56"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332659","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337979","display_name":"Cancer Center, University of Florida Health","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399836196.pdf"},"referenced_works_count":169,"referenced_works":["https://openalex.org/W569478347","https://openalex.org/W1505559183","https://openalex.org/W1555447043","https://openalex.org/W1983762572","https://openalex.org/W1986316308","https://openalex.org/W1988075836","https://openalex.org/W2019062120","https://openalex.org/W2032889069","https://openalex.org/W2088245621","https://openalex.org/W2104036010","https://openalex.org/W2105705221","https://openalex.org/W2107554012","https://openalex.org/W2144963196","https://openalex.org/W2160676466","https://openalex.org/W2163922914","https://openalex.org/W2269649163","https://openalex.org/W2295107390","https://openalex.org/W2341721391","https://openalex.org/W2347064614","https://openalex.org/W2441337908","https://openalex.org/W2509141893","https://openalex.org/W2530758423","https://openalex.org/W2548971603","https://openalex.org/W2565639579","https://openalex.org/W2588030037","https://openalex.org/W2612467560","https://openalex.org/W2612655602","https://openalex.org/W2618530766","https://openalex.org/W2618925322","https://openalex.org/W2627654851","https://openalex.org/W2641905542","https://openalex.org/W2728842897","https://openalex.org/W2746791238","https://openalex.org/W2751625431","https://openalex.org/W2775908481","https://openalex.org/W2794301983","https://openalex.org/W2796393045","https://openalex.org/W2803317672","https://openalex.org/W2810144292","https://openalex.org/W2883972171","https://openalex.org/W2896664485","https://openalex.org/W2903685163","https://openalex.org/W2912083425","https://openalex.org/W2919115771","https://openalex.org/W2921558168","https://openalex.org/W2949564787","https://openalex.org/W2951023292","https://openalex.org/W2952915831","https://openalex.org/W2962858109","https://openalex.org/W2964695147","https://openalex.org/W2971686199","https://openalex.org/W2977442587","https://openalex.org/W2980998394","https://openalex.org/W2981110120","https://openalex.org/W2990283237","https://openalex.org/W2992982579","https://openalex.org/W2998571806","https://openalex.org/W3010841569","https://openalex.org/W3020093160","https://openalex.org/W3022215132","https://openalex.org/W3041133507","https://openalex.org/W3046863270","https://openalex.org/W3047346587","https://openalex.org/W3084300194","https://openalex.org/W3111521801","https://openalex.org/W3113917069","https://openalex.org/W3119952098","https://openalex.org/W3126950550","https://openalex.org/W3130852260","https://openalex.org/W3132455321","https://openalex.org/W3136205387","https://openalex.org/W3165664581","https://openalex.org/W3177828909","https://openalex.org/W3181660183","https://openalex.org/W3182677297","https://openalex.org/W3189308911","https://openalex.org/W3203078160","https://openalex.org/W3204764757","https://openalex.org/W3205071530","https://openalex.org/W3206891048","https://openalex.org/W3207315182","https://openalex.org/W3215525389","https://openalex.org/W3217546525","https://openalex.org/W4211123163","https://openalex.org/W4211219428","https://openalex.org/W4213077304","https://openalex.org/W4220809164","https://openalex.org/W4221003443","https://openalex.org/W4221086801","https://openalex.org/W4221095552","https://openalex.org/W4225821407","https://openalex.org/W4225986381","https://openalex.org/W4226137944","https://openalex.org/W4229024029","https://openalex.org/W4229447215","https://openalex.org/W4237794239","https://openalex.org/W4245551996","https://openalex.org/W4281716291","https://openalex.org/W4281854682","https://openalex.org/W4282036924","https://openalex.org/W4282828373","https://openalex.org/W4283696997","https://openalex.org/W4286897344","https://openalex.org/W4291624975","https://openalex.org/W4292213064","https://openalex.org/W4292738946","https://openalex.org/W4293695816","https://openalex.org/W4294311175","https://openalex.org/W4295308760","https://openalex.org/W4306810133","https://openalex.org/W4307725221","https://openalex.org/W4308055023","https://openalex.org/W4308458522","https://openalex.org/W4308804054","https://openalex.org/W4309490745","https://openalex.org/W4310283148","https://openalex.org/W4310434704","https://openalex.org/W4311169558","https://openalex.org/W4311480785","https://openalex.org/W4312203476","https://openalex.org/W4313700805","https://openalex.org/W4315488007","https://openalex.org/W4319592282","https://openalex.org/W4327550249","https://openalex.org/W4328116288","https://openalex.org/W4353020443","https://openalex.org/W4353070498","https://openalex.org/W4360951525","https://openalex.org/W4362721877","https://openalex.org/W4365138327","https://openalex.org/W4367186564","https://openalex.org/W4367366132","https://openalex.org/W4379197245","https://openalex.org/W4380244210","https://openalex.org/W4380987341","https://openalex.org/W4381093560","https://openalex.org/W4381489565","https://openalex.org/W4381839100","https://openalex.org/W4382396100","https://openalex.org/W4382520315","https://openalex.org/W4384818095","https://openalex.org/W4385635075","https://openalex.org/W4385815479","https://openalex.org/W4385829298","https://openalex.org/W4385884199","https://openalex.org/W4386607677","https://openalex.org/W4386811276","https://openalex.org/W4386885921","https://openalex.org/W4388865454","https://openalex.org/W4389028830","https://openalex.org/W4390874575","https://openalex.org/W4391993840","https://openalex.org/W4392518302","https://openalex.org/W4392883923","https://openalex.org/W4394608809","https://openalex.org/W4396712387","https://openalex.org/W4399128715","https://openalex.org/W6705012245","https://openalex.org/W6750240143","https://openalex.org/W6764522282","https://openalex.org/W6772750526","https://openalex.org/W6791353385","https://openalex.org/W6793937756","https://openalex.org/W6803799936","https://openalex.org/W6805487804","https://openalex.org/W6841817982","https://openalex.org/W6843764944","https://openalex.org/W6853688918","https://openalex.org/W6859033485"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2161444195","https://openalex.org/W2589019771","https://openalex.org/W2985540061","https://openalex.org/W2185012154","https://openalex.org/W4252521128","https://openalex.org/W4287867321","https://openalex.org/W2911183501","https://openalex.org/W2104014222","https://openalex.org/W2153465672"],"abstract_inverted_index":{"Morphological":[0],"profiling":[1,114,167],"is":[2],"a":[3,21,97,118,139],"valuable":[4],"tool":[5],"in":[6,31,42,49,57,104,148,168,178],"phenotypic":[7,169],"drug":[8,75,170],"discovery.":[9],"The":[10],"advent":[11],"of":[12,20,24,27,70,73,78,89,100,107,121,145,165],"high-throughput":[13],"automated":[14],"imaging":[15],"has":[16],"enabled":[17],"the":[18,36,87,101,105,112,143,163],"capturing":[19],"wide":[22],"range":[23],"morphological":[25,108,166],"features":[26],"cells":[28],"or":[29],"organisms":[30],"response":[32],"to":[33,54,86],"perturbations":[34],"at":[35,62],"single-cell":[37],"resolution.":[38],"Concurrently,":[39],"significant":[40],"advances":[41,103],"machine":[43],"learning":[44,147],"and":[45,83,127,131,157,172,176],"deep":[46,128,146],"learning,":[47,156],"especially":[48],"computer":[50],"vision,":[51],"have":[52,67],"led":[53],"substantial":[55],"improvements":[56],"analyzing":[58],"large-scale":[59],"high-content":[60],"images":[61],"high":[63],"throughput.":[64],"These":[65],"efforts":[66],"facilitated":[68],"understanding":[69],"compound":[71],"mechanism":[72],"action,":[74],"repurposing,":[76],"characterization":[77],"cell":[79,152],"morphodynamics":[80],"under":[81],"perturbation,":[82],"ultimately":[84],"contributing":[85],"development":[88],"novel":[90],"therapeutics.":[91],"In":[92],"this":[93,149,179],"review,":[94],"we":[95,161],"provide":[96],"comprehensive":[98],"overview":[99],"recent":[102],"field":[106],"profiling.":[109],"We":[110,137],"summarize":[111],"image":[113,154],"analysis":[115,122],"workflow,":[116],"survey":[117],"broad":[119],"spectrum":[120],"strategies":[123],"encompassing":[124],"feature":[125],"engineering-":[126],"learning-based":[129],"approaches,":[130],"introduce":[132],"publicly":[133],"available":[134],"benchmark":[135],"datasets.":[136],"place":[138],"particular":[140],"emphasis":[141],"on":[142],"application":[144,164],"pipeline,":[150],"covering":[151],"segmentation,":[153],"representation":[155],"multimodal":[158],"learning.":[159],"Additionally,":[160],"illuminate":[162],"discovery":[171],"highlight":[173],"potential":[174],"challenges":[175],"opportunities":[177],"field.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":4}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
