{"id":"https://openalex.org/W4399201860","doi":"https://doi.org/10.1093/bib/bbae257","title":"Multi-modal domain adaptation for revealing spatial functional landscape from spatially resolved transcriptomics","display_name":"Multi-modal domain adaptation for revealing spatial functional landscape from spatially resolved transcriptomics","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4399201860","doi":"https://doi.org/10.1093/bib/bbae257","pmid":"https://pubmed.ncbi.nlm.nih.gov/38819253"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae257","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae257/58030313/bbae257.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae257/58030313/bbae257.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055060848","display_name":"Lequn Wang","orcid":"https://orcid.org/0000-0003-3285-2235"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210121447","display_name":"Center for Excellence in Molecular Cell Science","ror":"https://ror.org/02rrdvm96","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210121447"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lequn Wang","raw_affiliation_strings":["Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","institution_ids":["https://openalex.org/I4210121447","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056368908","display_name":"Yaofeng Hu","orcid":"https://orcid.org/0009-0005-7651-3712"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaofeng Hu","raw_affiliation_strings":["Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":[]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023711566","display_name":"Kai Xiao","orcid":"https://orcid.org/0000-0002-0402-8276"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210121447","display_name":"Center for Excellence in Molecular Cell Science","ror":"https://ror.org/02rrdvm96","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210121447"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Xiao","raw_affiliation_strings":["Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","institution_ids":["https://openalex.org/I4210121447","https://openalex.org/I19820366"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023728748","display_name":"Chuanchao Zhang","orcid":"https://orcid.org/0000-0003-0690-613X"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chuanchao Zhang","raw_affiliation_strings":["Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":[]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058311447","display_name":"Qianqian Shi","orcid":"https://orcid.org/0000-0002-5266-6731"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210157677","display_name":"Hubei Academy of Agricultural Sciences","ror":"https://ror.org/04qg81z57","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210157677"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qianqian Shi","raw_affiliation_strings":["Huazhong Agricultural University , College of Informatics, , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","Hubei Engineering Technology Research Center of Agricultural Big Data, Huazhong Agricultural University , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province, China"],"affiliations":[{"raw_affiliation_string":"Huazhong Agricultural University , College of Informatics, , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Engineering Technology Research Center of Agricultural Big Data, Huazhong Agricultural University , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics , College of Informatics, , No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province , China","institution_ids":["https://openalex.org/I4210157677"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, No. 1 Shizishan Street, Hongshan District, Wuhan 430070, Hubei Province, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012283696","display_name":"Luonan Chen","orcid":"https://orcid.org/0000-0002-3960-0068"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210121447","display_name":"Center for Excellence in Molecular Cell Science","ror":"https://ror.org/02rrdvm96","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210121447"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Luonan Chen","raw_affiliation_strings":["Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China","University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences , No. 320 Yue Yang Road, Xuhui District, Shanghai 200031 , China","institution_ids":["https://openalex.org/I4210121447","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":[]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , No. 80 Zhongguancun East Road, Haidian District, Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , School of Life Science, Hangzhou Institute for Advanced Study, , 1 Xiangshan Lane, Hangzhou 310024 , China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, 1 Xiangshan Lane, Hangzhou 310024, China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5012283696","https://openalex.org/A5023728748","https://openalex.org/A5058311447"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I204823248","https://openalex.org/I4210121447","https://openalex.org/I4210157677","https://openalex.org/I4210165038"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.3393,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.88500892,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"25","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9264000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6599277853965759},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.6102327704429626},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.6083518862724304},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.530646026134491},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5205139517784119},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.50118088722229},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.45320677757263184},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.44103625416755676},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4304276704788208},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3575176000595093},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13664910197257996},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.13592931628227234},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.09093770384788513}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6599277853965759},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.6102327704429626},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.6083518862724304},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.530646026134491},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5205139517784119},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.50118088722229},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.45320677757263184},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.44103625416755676},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4304276704788208},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3575176000595093},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13664910197257996},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.13592931628227234},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.09093770384788513},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae257","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae257/58030313/bbae257.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38819253","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38819253","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11141295","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11141295","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11141295/pdf/bbae257.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae257","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae257/58030313/bbae257.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1031434965","display_name":null,"funder_award_id":"31930022","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1181675712","display_name":null,"funder_award_id":"JPMJMS202","funder_id":"https://openalex.org/F4320338247","funder_display_name":"Moonshot Research and Development Program"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2495752485","display_name":null,"funder_award_id":"2022YFA","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G395067120","display_name":null,"funder_award_id":"2022YFA1004800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4179699635","display_name":null,"funder_award_id":"23JS1401300","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4301265371","display_name":null,"funder_award_id":"T2341007","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4789610975","display_name":null,"funder_award_id":"XDB38040400","funder_id":"https://openalex.org/F4320321133","funder_display_name":"Chinese Academy of Sciences"},{"id":"https://openalex.org/G5368403867","display_name":null,"funder_award_id":"JPMJMS2021","funder_id":"https://openalex.org/F4320338247","funder_display_name":"Moonshot Research and Development Program"},{"id":"https://openalex.org/G5543296614","display_name":null,"funder_award_id":"JPMJMS20","funder_id":"https://openalex.org/F4320338247","funder_display_name":"Moonshot Research and Development Program"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6455397430","display_name":null,"funder_award_id":"No. 23JS1401300","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6708942360","display_name":null,"funder_award_id":"12131020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7022795856","display_name":null,"funder_award_id":"2023HIAS-Y024","funder_id":"https://openalex.org/F4320326972","funder_display_name":"University of Chinese Academy of Sciences"},{"id":"https://openalex.org/G7438851577","display_name":null,"funder_award_id":"62202120","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7662963138","display_name":null,"funder_award_id":"T2350003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8630035389","display_name":null,"funder_award_id":"31020","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320326972","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338247","display_name":"Moonshot Research and Development Program","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399201860.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1970505085","https://openalex.org/W1981811514","https://openalex.org/W1987971958","https://openalex.org/W2051224630","https://openalex.org/W2065246627","https://openalex.org/W2091152603","https://openalex.org/W2097899015","https://openalex.org/W2159707944","https://openalex.org/W2471536144","https://openalex.org/W2554279120","https://openalex.org/W2563114544","https://openalex.org/W2600034753","https://openalex.org/W2601419148","https://openalex.org/W2739492614","https://openalex.org/W2752829361","https://openalex.org/W2807651426","https://openalex.org/W2809368942","https://openalex.org/W2897249806","https://openalex.org/W2913259103","https://openalex.org/W2916091221","https://openalex.org/W2951222857","https://openalex.org/W2974279839","https://openalex.org/W2985331920","https://openalex.org/W2999977864","https://openalex.org/W3022943160","https://openalex.org/W3093858607","https://openalex.org/W3106188259","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3126958162","https://openalex.org/W3165120573","https://openalex.org/W3172367905","https://openalex.org/W3178066990","https://openalex.org/W3203364159","https://openalex.org/W4226192560","https://openalex.org/W4229033508","https://openalex.org/W4235169531","https://openalex.org/W4236965008","https://openalex.org/W4282023698","https://openalex.org/W4285388882","https://openalex.org/W4292907187","https://openalex.org/W4306406844","https://openalex.org/W4306842618","https://openalex.org/W4309341717","https://openalex.org/W4309918428","https://openalex.org/W4322738920","https://openalex.org/W4327568990","https://openalex.org/W4378232715","https://openalex.org/W4378783017","https://openalex.org/W4390814844","https://openalex.org/W4391592445","https://openalex.org/W6673171608","https://openalex.org/W6758889384","https://openalex.org/W6777107629","https://openalex.org/W6798785594","https://openalex.org/W6838826960"],"related_works":["https://openalex.org/W73545470","https://openalex.org/W4224266612","https://openalex.org/W2383394264","https://openalex.org/W4320153225","https://openalex.org/W4293261942","https://openalex.org/W3125968744","https://openalex.org/W2167701463","https://openalex.org/W2110287964","https://openalex.org/W4307407935","https://openalex.org/W649759291"],"abstract_inverted_index":{"Spatially":[0],"resolved":[1],"transcriptomics":[2,75],"(SRT)":[3],"has":[4],"emerged":[5],"as":[6,179],"a":[7,34,66,77,180,188],"powerful":[8,189],"tool":[9,182],"for":[10,54,73,193],"investigating":[11],"gene":[12,86],"expression":[13,31,87],"in":[14,51,152,164,173],"spatial":[15,45,55,74,94,105,117,154],"contexts,":[16],"providing":[17],"insights":[18],"into":[19],"the":[20,30,93,101,116,129,139],"molecular":[21],"mechanisms":[22],"underlying":[23],"organ":[24],"development":[25],"and":[26,44,57,88,113,133,137,159,190],"disease":[27],"pathology.":[28],"However,":[29],"sparsity":[32],"poses":[33],"computational":[35],"challenge":[36],"to":[37,63,91,122],"integrate":[38,123],"other":[39,89],"modalities":[40,90],"(e.g.":[41],"histological":[42],"images":[43],"locations)":[46],"that":[47,147],"are":[48],"simultaneously":[49],"captured":[50],"SRT":[52,195],"datasets":[53],"clustering":[56,142],"variation":[58],"analyses.":[59],"In":[60,176],"this":[61],"study,":[62],"meet":[64],"such":[65],"challenge,":[67],"we":[68],"propose":[69],"multi-modal":[70,79,106,125,184],"domain":[71,81],"adaption":[72],"(stMDA),":[76],"novel":[78],"unsupervised":[80],"adaptation":[82],"method,":[83],"which":[84],"integrates":[85],"reveal":[92],"functional":[95],"landscape.":[96],"Specifically,":[97],"stMDA":[98,148,162,178],"first":[99],"learns":[100],"modality-specific":[102],"representations":[103,121],"from":[104],"data":[107,185],"using":[108],"multiple":[109],"neural":[110],"network":[111],"architectures":[112],"then":[114],"aligns":[115],"distributions":[118],"across":[119,156],"modal":[120],"these":[124],"representations,":[126],"thus":[127],"facilitating":[128],"integration":[130,186],"of":[131,141,183,201],"global":[132],"spatially":[134,166],"local":[135],"information":[136],"improving":[138],"consistency":[140],"assignments.":[143],"Our":[144],"results":[145],"demonstrate":[146],"outperforms":[149],"existing":[150],"methods":[151],"identifying":[153,165],"domains":[155],"diverse":[157],"platforms":[158],"species.":[160],"Furthermore,":[161],"excels":[163],"variable":[167],"genes":[168],"with":[169],"high":[170],"prognostic":[171],"potential":[172],"cancer":[174],"tissues.":[175],"conclusion,":[177],"new":[181],"provides":[187],"flexible":[191],"framework":[192],"analyzing":[194],"datasets,":[196],"thereby":[197],"advancing":[198],"our":[199],"understanding":[200],"intricate":[202],"biological":[203],"systems.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
