{"id":"https://openalex.org/W4399041810","doi":"https://doi.org/10.1093/bib/bbae256","title":"Complementary multi-modality molecular self-supervised learning via non-overlapping masking for property prediction","display_name":"Complementary multi-modality molecular self-supervised learning via non-overlapping masking for property prediction","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4399041810","doi":"https://doi.org/10.1093/bib/bbae256","pmid":"https://pubmed.ncbi.nlm.nih.gov/38801702"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae256","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae256/57927570/bbae256.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae256/57927570/bbae256.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089201296","display_name":"Ao Shen","orcid":"https://orcid.org/0009-0001-1937-6855"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Shen","raw_affiliation_strings":["Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0001-1937-6855","affiliations":[{"raw_affiliation_string":"Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011879942","display_name":"Mingzhi Yuan","orcid":"https://orcid.org/0000-0003-1322-7530"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingzhi Yuan","raw_affiliation_strings":["Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-1322-7530","affiliations":[{"raw_affiliation_string":"Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103062942","display_name":"Yingfan Ma","orcid":"https://orcid.org/0009-0004-7335-785X"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingfan Ma","raw_affiliation_strings":["Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"raw_orcid":"https://orcid.org/0009-0004-7335-785X","affiliations":[{"raw_affiliation_string":"Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100594305","display_name":"Jie Du","orcid":null},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Du","raw_affiliation_strings":["Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029371371","display_name":"Manning Wang","orcid":"https://orcid.org/0000-0002-9255-3897"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Manning Wang","raw_affiliation_strings":["Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-9255-3897","affiliations":[{"raw_affiliation_string":"Digital Medical Research Center , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755"]},{"raw_affiliation_string":"Fudan University , School of Basic Medical Sciences, , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University , 131 Dong\u2019an Road, 200032, Shanghai , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai Key Laboratory of Medical Image Computing and Computer Assisted Intervention, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Digital Medical Research Center, School of Basic Medical Sciences, Fudan University, 131 Dong'an Road, 200032, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.0771,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.9472315,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"25","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7974660396575928},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.671970009803772},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.6531275510787964},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5992535948753357},{"id":"https://openalex.org/keywords/masking","display_name":"Masking (illustration)","score":0.5447061061859131},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5399487018585205},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.522190272808075},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.5141337513923645},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.48613259196281433},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.4164232611656189},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2328144907951355}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7974660396575928},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.671970009803772},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.6531275510787964},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5992535948753357},{"id":"https://openalex.org/C2777402240","wikidata":"https://www.wikidata.org/wiki/Q6783436","display_name":"Masking (illustration)","level":2,"score":0.5447061061859131},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5399487018585205},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.522190272808075},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.5141337513923645},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.48613259196281433},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.4164232611656189},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2328144907951355},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069553","descriptor_name":"Supervised Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae256","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae256/57927570/bbae256.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38801702","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38801702","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11129775","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11129775","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11129775/pdf/bbae256.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae256","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae256","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae256/57927570/bbae256.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3250757299","display_name":null,"funder_award_id":"23S41900400","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G5288907422","display_name":null,"funder_award_id":"62076070","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7754111381","display_name":null,"funder_award_id":"23S41900400","funder_id":"https://openalex.org/F4320336652","funder_display_name":"Science and Technology Innovation Plan Of Shanghai Science and Technology Commission"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320336652","display_name":"Science and Technology Innovation Plan Of Shanghai Science and Technology Commission","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4399041810.pdf"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1757990252","https://openalex.org/W1975147762","https://openalex.org/W1987749240","https://openalex.org/W2594183968","https://openalex.org/W2602856279","https://openalex.org/W2803462582","https://openalex.org/W2900694120","https://openalex.org/W2953128081","https://openalex.org/W2965373594","https://openalex.org/W2968734407","https://openalex.org/W2973114758","https://openalex.org/W2987522751","https://openalex.org/W3034516664","https://openalex.org/W3093934881","https://openalex.org/W3094060150","https://openalex.org/W3095883070","https://openalex.org/W3113447514","https://openalex.org/W3129850062","https://openalex.org/W3134958209","https://openalex.org/W3152893301","https://openalex.org/W3157265962","https://openalex.org/W3190020173","https://openalex.org/W3191637674","https://openalex.org/W3198212015","https://openalex.org/W3198974858","https://openalex.org/W3213940558","https://openalex.org/W4206078729","https://openalex.org/W4206367183","https://openalex.org/W4213077304","https://openalex.org/W4214868967","https://openalex.org/W4285483775","https://openalex.org/W4288728834","https://openalex.org/W4290876361","https://openalex.org/W4290877962","https://openalex.org/W4293089302","https://openalex.org/W4293821372","https://openalex.org/W4300978540","https://openalex.org/W4365455552","https://openalex.org/W4378745398","https://openalex.org/W4380451015","https://openalex.org/W4381679608","https://openalex.org/W4385767952","https://openalex.org/W4386046779","https://openalex.org/W4386071873","https://openalex.org/W4387928939","https://openalex.org/W4388423838","https://openalex.org/W4389126617","https://openalex.org/W4389888290","https://openalex.org/W6736685754","https://openalex.org/W6760797834","https://openalex.org/W6766673545","https://openalex.org/W6770257887","https://openalex.org/W6772452955","https://openalex.org/W6779533173","https://openalex.org/W6784526300","https://openalex.org/W6784614190","https://openalex.org/W6797236502","https://openalex.org/W6801428820","https://openalex.org/W6802320626","https://openalex.org/W6803136014","https://openalex.org/W6810640834","https://openalex.org/W6839688514","https://openalex.org/W6845309236","https://openalex.org/W6850790925","https://openalex.org/W6854034325","https://openalex.org/W6857334121","https://openalex.org/W6857479877"],"related_works":["https://openalex.org/W73545470","https://openalex.org/W4224266612","https://openalex.org/W2383394264","https://openalex.org/W4320153225","https://openalex.org/W4293261942","https://openalex.org/W3125968744","https://openalex.org/W2167701463","https://openalex.org/W2110287964","https://openalex.org/W4307407935","https://openalex.org/W649759291"],"abstract_inverted_index":{"Self-supervised":[0],"learning":[1,9,65],"plays":[2],"an":[3,61],"important":[4,47],"role":[5],"in":[6,17,127],"molecular":[7,12,31,39,68,131],"representation":[8],"because":[10],"labeled":[11],"data":[13,74,77],"are":[14,78],"usually":[15],"limited":[16],"many":[18],"tasks,":[19,134],"such":[20],"as":[21],"chemical":[22],"property":[23,132],"prediction":[24,133],"and":[25,41,50,70,75,135,146],"virtual":[26],"screening.":[27],"However,":[28],"most":[29],"existing":[30],"pre-training":[32],"methods":[33],"focus":[34],"on":[35],"one":[36],"modality":[37],"of":[38,45,130,142],"data,":[40],"the":[42,143,147],"complementary":[43],"information":[44],"two":[46,116],"modalities,":[48],"SMILES":[49,69,73],"graph,":[51],"is":[52,94],"not":[53],"fully":[54],"explored.":[55],"In":[56,101],"this":[57],"study,":[58],"we":[59,103],"propose":[60],"effective":[62],"multi-modality":[63,144],"self-supervised":[64],"framework":[66,123,145],"for":[67],"graph.":[71],"Specifically,":[72],"graph":[76],"first":[79],"tokenized":[80],"so":[81],"that":[82,121],"they":[83],"can":[84],"be":[85],"processed":[86],"by":[87,96],"a":[88,97,105,128,136],"unified":[89],"Transformer-based":[90],"backbone":[91],"network,":[92],"which":[93],"trained":[95],"masked":[98],"reconstruction":[99],"strategy.":[100,149],"addition,":[102],"introduce":[104],"specialized":[106],"non-overlapping":[107],"masking":[108,148],"strategy":[109],"to":[110],"encourage":[111],"fine-grained":[112],"interaction":[113],"between":[114],"these":[115],"modalities.":[117],"Experimental":[118],"results":[119],"show":[120],"our":[122],"achieves":[124],"state-of-the-art":[125],"performance":[126],"series":[129],"detailed":[137],"ablation":[138],"study":[139],"demonstrates":[140],"efficacy":[141]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
