{"id":"https://openalex.org/W4399053249","doi":"https://doi.org/10.1093/bib/bbae245","title":"Accurate prediction of antibody function and structure using bio-inspired antibody language model","display_name":"Accurate prediction of antibody function and structure using bio-inspired antibody language model","publication_year":2024,"publication_date":"2024-05-23","ids":{"openalex":"https://openalex.org/W4399053249","doi":"https://doi.org/10.1093/bib/bbae245","pmid":"https://pubmed.ncbi.nlm.nih.gov/38797969"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae245","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae245/57910146/bbae245.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae245/57910146/bbae245.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101388197","display_name":"Hongtai Jing","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongtai Jing","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai 200433 , China","MOE Frontiers Center for Brain Science, Fudan University , Shanghai 200032, China","Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210164150"]},{"raw_affiliation_string":"MOE Frontiers Center for Brain Science, Fudan University , Shanghai 200032, China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112992087","display_name":"Zhengtao Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengtao Gao","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100604665","display_name":"Sheng Xu","orcid":"https://orcid.org/0000-0002-6507-9122"},"institutions":[{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4391012619"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sheng Xu","raw_affiliation_strings":["Shanghai AI Laboratory , Shanghai 200232 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai AI Laboratory , Shanghai 200232 , China","institution_ids":["https://openalex.org/I4391012619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001594847","display_name":"Tao Shen","orcid":"https://orcid.org/0000-0002-6109-371X"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Shen","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","Zelixir Biotech , Shanghai 201206 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Zelixir Biotech , Shanghai 201206 , China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089560981","display_name":"Zhangzhi Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhangzhi Peng","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019534658","display_name":"Shwai He","orcid":null},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shwai He","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029851841","display_name":"Tao You","orcid":"https://orcid.org/0000-0002-1338-6630"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao You","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101668491","display_name":"Shuang Ye","orcid":"https://orcid.org/0000-0001-5624-7908"},"institutions":[{"id":"https://openalex.org/I133868755","display_name":"Shanghai Medical College of Fudan University","ror":"https://ror.org/01zntxs11","country_code":"CN","type":"education","lineage":["https://openalex.org/I133868755","https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210093194","display_name":"Fudan University Shanghai Cancer Center","ror":"https://ror.org/00my25942","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210093194"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Ye","raw_affiliation_strings":["Department of Gynecologic Oncology, Fudan University Shanghai Cancer Center , Shanghai 200032 , China","Department of Oncology, Shanghai Medical College, Fudan University , Shanghai 200032 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gynecologic Oncology, Fudan University Shanghai Cancer Center , Shanghai 200032 , China","institution_ids":["https://openalex.org/I4210093194"]},{"raw_affiliation_string":"Department of Oncology, Shanghai Medical College, Fudan University , Shanghai 200032 , China","institution_ids":["https://openalex.org/I133868755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045411384","display_name":"Wei Lin","orcid":"https://orcid.org/0000-0002-1863-4306"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4210164150","display_name":"Shanghai Center for Brain Science and Brain-Inspired Technology","ror":"https://ror.org/0551a0y31","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210164150"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4391012619"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Lin","raw_affiliation_strings":["Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai 200433 , China","MOE Frontiers Center for Brain Science, Fudan University , Shanghai 200032 , China","Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","School of Mathematical Sciences and Shanghai Center for Mathematical Sciences, Fudan University , Shanghai 200433 , China","Shanghai AI Laboratory , Shanghai 200232 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067","https://openalex.org/I4210164150"]},{"raw_affiliation_string":"MOE Frontiers Center for Brain Science, Fudan University , Shanghai 200032 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"School of Mathematical Sciences and Shanghai Center for Mathematical Sciences, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai AI Laboratory , Shanghai 200232 , China","institution_ids":["https://openalex.org/I4391012619"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023777406","display_name":"Siqi Sun","orcid":"https://orcid.org/0000-0001-7240-8724"},"institutions":[{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]},{"id":"https://openalex.org/I4391012619","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4391012619"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siqi Sun","raw_affiliation_strings":["Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","Shanghai AI Laboratory , Shanghai 200232 , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute of Intelligent Complex Systems, Fudan University , Shanghai 200433 , China","institution_ids":["https://openalex.org/I24943067"]},{"raw_affiliation_string":"Shanghai AI Laboratory , Shanghai 200232 , China","institution_ids":["https://openalex.org/I4391012619"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":8.5778,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.98539394,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"25","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7059802412986755},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6250467896461487},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6099610328674316},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.5570839643478394},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5462687611579895},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49634891748428345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4515976309776306},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22403642535209656},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.16132628917694092},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08514580130577087}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7059802412986755},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6250467896461487},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6099610328674316},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.5570839643478394},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5462687611579895},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49634891748428345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4515976309776306},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22403642535209656},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.16132628917694092},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08514580130577087},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae245","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae245/57910146/bbae245.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38797969","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38797969","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11128484","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11128484","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11128484/pdf/bbae245.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae245","pdf_url":"https://academic.oup.com/bib/article-pdf/25/4/bbae245/57910146/bbae245.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","display_name":"Decent work and economic growth","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1596530966","display_name":null,"funder_award_id":"82373419","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2442614687","display_name":null,"funder_award_id":"2023ZKZD04","funder_id":"https://openalex.org/F4320321881","funder_display_name":"Shanghai Municipal Education Commission"},{"id":"https://openalex.org/G2957964302","display_name":null,"funder_award_id":"11925103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G296198563","display_name":null,"funder_award_id":"2021SHZDZX0103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3295047274","display_name":null,"funder_award_id":"20JC1413400","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4269022257","display_name":null,"funder_award_id":"22JC1402500","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G4389483464","display_name":null,"funder_award_id":"2021SHZDZX0103","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6070844769","display_name":null,"funder_award_id":"21511100200","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6098152245","display_name":null,"funder_award_id":"22dz1200502","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6352046500","display_name":null,"funder_award_id":"22JC1401402","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"},{"id":"https://openalex.org/G6758385550","display_name":null,"funder_award_id":"2021SHZDZX0103","funder_id":"https://openalex.org/F4320321851","funder_display_name":"Fudan University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321851","display_name":"Fudan University","ror":"https://ror.org/013q1eq08"},{"id":"https://openalex.org/F4320321881","display_name":"Shanghai Municipal Education Commission","ror":"https://ror.org/05tewj457"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F7351031327","display_name":"Shanghai Artificial Intelligence Laboratory","ror":"https://ror.org/03wkvpx79"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399053249.pdf"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1855237549","https://openalex.org/W1991498388","https://openalex.org/W1993928780","https://openalex.org/W2082947088","https://openalex.org/W2137603774","https://openalex.org/W2140673705","https://openalex.org/W2163480486","https://openalex.org/W2187089797","https://openalex.org/W2412035302","https://openalex.org/W2429076077","https://openalex.org/W2474661075","https://openalex.org/W2554576124","https://openalex.org/W2583289470","https://openalex.org/W2786672974","https://openalex.org/W2896457183","https://openalex.org/W2951119766","https://openalex.org/W2951433247","https://openalex.org/W2953008890","https://openalex.org/W2953103783","https://openalex.org/W2971227267","https://openalex.org/W2976155788","https://openalex.org/W3007500173","https://openalex.org/W3119027829","https://openalex.org/W3139654928","https://openalex.org/W3146944767","https://openalex.org/W3154275519","https://openalex.org/W3156522942","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3179485843","https://openalex.org/W3186179742","https://openalex.org/W3202105508","https://openalex.org/W3206187363","https://openalex.org/W3207204660","https://openalex.org/W4200635416","https://openalex.org/W4206087583","https://openalex.org/W4206948363","https://openalex.org/W4210494137","https://openalex.org/W4210520848","https://openalex.org/W4224088844","https://openalex.org/W4226108318","https://openalex.org/W4229892776","https://openalex.org/W4280625391","https://openalex.org/W4283068487","https://openalex.org/W4300861364","https://openalex.org/W4318071656","https://openalex.org/W4327550249","https://openalex.org/W4366998330","https://openalex.org/W4367302062","https://openalex.org/W4378745480","https://openalex.org/W4385245566","https://openalex.org/W4388979610","https://openalex.org/W4393950286","https://openalex.org/W6739901393","https://openalex.org/W6748816842","https://openalex.org/W6755207826","https://openalex.org/W6763868836","https://openalex.org/W6792311948","https://openalex.org/W6793987055","https://openalex.org/W6798272402","https://openalex.org/W6802033083","https://openalex.org/W6805005235","https://openalex.org/W6809542258","https://openalex.org/W6852363909","https://openalex.org/W6855948368"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"In":[0],"recent":[1],"decades,":[2],"antibodies":[3,60],"have":[4,36],"emerged":[5],"as":[6],"indispensable":[7],"therapeutics":[8],"for":[9,177],"combating":[10],"diseases,":[11],"particularly":[12],"viral":[13],"infections.":[14],"However,":[15],"their":[16,65,73],"development":[17,172],"has":[18],"been":[19],"hindered":[20],"by":[21,46,173],"limited":[22],"structural":[23],"information":[24,49],"and":[25,44,68,108,155,168],"labor-intensive":[26],"engineering":[27,167],"processes.":[28],"Fortunately,":[29],"significant":[30,162],"advancements":[31],"in":[32,157],"deep":[33],"learning":[34],"methods":[35,150],"facilitated":[37],"the":[38,57,69,83,158,175],"precise":[39],"prediction":[40,122,183],"of":[41,59,72,135],"protein":[42],"structure":[43,182],"function":[45],"leveraging":[47],"co-evolution":[48],"from":[50,132,142],"homologous":[51],"proteins.":[52],"Despite":[53],"these":[54],"advances,":[55],"predicting":[56,137],"conformation":[58],"remains":[61],"challenging":[62],"due":[63],"to":[64,77,112,164],"unique":[66,107],"evolution":[67],"high":[70],"flexibility":[71],"antigen-binding":[74,121],"regions.":[75],"Here,":[76],"address":[78],"this":[79],"challenge,":[80],"we":[81,125],"present":[82],"Bio-inspired":[84],"Antibody":[85],"Language":[86],"Model":[87],"(BALM).":[88],"This":[89],"model":[90],"is":[91,185],"trained":[92],"on":[93],"a":[94],"vast":[95],"dataset":[96],"comprising":[97],"336":[98],"million":[99],"40%":[100],"nonredundant":[101],"unlabeled":[102],"antibody":[103,140,159,171],"sequences,":[104],"capturing":[105],"both":[106],"conserved":[109],"properties":[110],"specific":[111],"antibodies.":[113],"Notably,":[114],"BALM":[115],"showcases":[116],"exceptional":[117],"performance":[118],"across":[119],"four":[120],"tasks.":[123],"Moreover,":[124],"introduce":[126],"BALMFold,":[127],"an":[128],"end-to-end":[129],"method":[130],"derived":[131],"BALM,":[133],"capable":[134],"swiftly":[136],"full":[138],"atomic":[139],"structures":[141],"individual":[143],"sequences.":[144],"Remarkably,":[145],"BALMFold":[146,181],"outperforms":[147],"those":[148],"well-established":[149],"like":[151],"AlphaFold2,":[152],"IgFold,":[153],"ESMFold":[154],"OmegaFold":[156],"benchmark,":[160],"demonstrating":[161],"potential":[163],"advance":[165],"innovative":[166],"streamline":[169],"therapeutic":[170],"reducing":[174],"need":[176],"unnecessary":[178],"trials.":[179],"The":[180],"server":[184],"freely":[186],"available":[187],"at":[188],"https://beamlab-sh.com/models/BALMFold.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":4}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
