{"id":"https://openalex.org/W4400918462","doi":"https://doi.org/10.1093/bib/bbae235","title":"Understanding proteome quantification in an interactive learning module on Google Cloud Platform","display_name":"Understanding proteome quantification in an interactive learning module on Google Cloud Platform","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400918462","doi":"https://doi.org/10.1093/bib/bbae235","pmid":"https://pubmed.ncbi.nlm.nih.gov/39041914"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae235","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae235/58618821/bbae235.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae235/58618821/bbae235.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034325179","display_name":"Kyle A. O\u2019Connell","orcid":"https://orcid.org/0000-0002-0464-9259"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I145325580","display_name":"Deloitte (United States)","ror":"https://ror.org/03xkm6e60","country_code":"US","type":"company","lineage":["https://openalex.org/I145325580","https://openalex.org/I4210139068"]},{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kyle A O\u2019Connell","raw_affiliation_strings":["Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States"],"affiliations":[{"raw_affiliation_string":"Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","institution_ids":["https://openalex.org/I145325580"]},{"raw_affiliation_string":"National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States","institution_ids":["https://openalex.org/I29955533","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036757105","display_name":"Benjamin Kopchick","orcid":"https://orcid.org/0000-0003-1125-0155"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I145325580","display_name":"Deloitte (United States)","ror":"https://ror.org/03xkm6e60","country_code":"US","type":"company","lineage":["https://openalex.org/I145325580","https://openalex.org/I4210139068"]},{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Kopchick","raw_affiliation_strings":["Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States"],"affiliations":[{"raw_affiliation_string":"Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","institution_ids":["https://openalex.org/I145325580"]},{"raw_affiliation_string":"National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States","institution_ids":["https://openalex.org/I29955533","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025658106","display_name":"T. K. Carlson","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I145325580","display_name":"Deloitte (United States)","ror":"https://ror.org/03xkm6e60","country_code":"US","type":"company","lineage":["https://openalex.org/I145325580","https://openalex.org/I4210139068"]},{"id":"https://openalex.org/I29955533","display_name":"Center for Information Technology","ror":"https://ror.org/03jh5a977","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I29955533"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thad Carlson","raw_affiliation_strings":["Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States"],"affiliations":[{"raw_affiliation_string":"Deloitte Consulting LLP Health Data and AI, , 1919 N Lynn St, Arlington VA, 22209, United States","institution_ids":["https://openalex.org/I145325580"]},{"raw_affiliation_string":"National Institutes of Health Center for Information Technology, , 9000 Rockville Pike, Bethesda MD, 20892, United States","institution_ids":["https://openalex.org/I29955533","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104421179","display_name":"David Belardo","orcid":null},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Belardo","raw_affiliation_strings":["Google Cloud , 1900 Reston Metro Plz, Suite 1400, Reston VA, 20190, United States"],"affiliations":[{"raw_affiliation_string":"Google Cloud , 1900 Reston Metro Plz, Suite 1400, Reston VA, 20190, United States","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059818425","display_name":"Stephanie D. Byrum","orcid":"https://orcid.org/0000-0002-1783-3610"},"institutions":[{"id":"https://openalex.org/I1301864278","display_name":"Arkansas Children's Hospital","ror":"https://ror.org/01t33qq42","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1301864278"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephanie D Byrum","raw_affiliation_strings":["Arkansas Children's Research Institute , 1 Children's Way, Little Rock, AR, 72202, United States","University of Arkansas for Medical Sciences Department of Biochemistry and Molecular Biology, , 4301 W. Markham St., Little Rock, AR, 72205, United States","University of Arkansas for Medical Sciences Department of Biomedical Informatics, , 4301 W. Markham St, Little Rock, AR, 72205, United States"],"affiliations":[{"raw_affiliation_string":"Arkansas Children's Research Institute , 1 Children's Way, Little Rock, AR, 72202, United States","institution_ids":["https://openalex.org/I1301864278"]},{"raw_affiliation_string":"University of Arkansas for Medical Sciences Department of Biochemistry and Molecular Biology, , 4301 W. Markham St., Little Rock, AR, 72205, United States","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"University of Arkansas for Medical Sciences Department of Biomedical Informatics, , 4301 W. Markham St, Little Rock, AR, 72205, United States","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5034325179"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I145325580","https://openalex.org/I29955533"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":0.7093,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65227152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"25","issue":"Supplement_1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sandbox","display_name":"Sandbox (software development)","score":0.8171539306640625},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7776519060134888},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.7171173095703125},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.1376747488975525}],"concepts":[{"id":"https://openalex.org/C167981075","wikidata":"https://www.wikidata.org/wiki/Q2667186","display_name":"Sandbox (software development)","level":2,"score":0.8171539306640625},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7776519060134888},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.7171173095703125},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.1376747488975525},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae235","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae235/58618821/bbae235.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39041914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39041914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11264296","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11264296","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11264296/pdf/bbae235.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae235","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae235","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae235/58618821/bbae235.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2327854915","display_name":null,"funder_award_id":"OIA-1946391","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2334344892","display_name":null,"funder_award_id":"R24GM137786","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4100314029","display_name":null,"funder_award_id":"GM121293","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4156043112","display_name":null,"funder_award_id":"1946391","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4710905402","display_name":null,"funder_award_id":"R24GM137786","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6697062410","display_name":null,"funder_award_id":"GM121293","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7412691212","display_name":null,"funder_award_id":"P20GM121293","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7470362337","display_name":null,"funder_award_id":"OIA-1946391","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8171683293","display_name":null,"funder_award_id":"P20GM121293","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400918462.pdf"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2146512944","https://openalex.org/W3090327832","https://openalex.org/W3111088326","https://openalex.org/W3171062506","https://openalex.org/W4381571874","https://openalex.org/W4403240373","https://openalex.org/W6873209535"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2033352828","https://openalex.org/W2355810117","https://openalex.org/W3098313552","https://openalex.org/W70177500","https://openalex.org/W2546418048","https://openalex.org/W2076427967","https://openalex.org/W3212184609","https://openalex.org/W2499283203"],"abstract_inverted_index":{"This":[0,42,248,291],"manuscript":[1,249],"describes":[2,250],"the":[3,27,32,37,73,112,140,144,151,162,190,237,245,251,275,280,286,297],"development":[4,252],"of":[5,12,26,39,76,111,135,211,225,239,253,260,274,288,299],"a":[6,13,67,119,165,178,208,222,254,261],"resource":[7,255],"module":[8,43,121,146,160,187,256,292],"that":[9,54,257,309],"is":[10,29,66,147,203,258,277],"part":[11,110,259],"learning":[14,45,120,145,186,262,294],"platform":[15,263],"named":[16,264],"'NIGMS":[17],"Sandbox":[18,28,35,115,266,276,283],"for":[19,59,88,153,205,232,267,314],"Cloud-based":[20,268],"Learning'":[21],"https://github.com/NIGMS/NIGMS-Sandbox.":[22,270],"The":[23,157,185,271],"overall":[24,272],"genesis":[25,273],"described":[30,278],"in":[31,50,177,279,305],"editorial":[33,281],"NIGMS":[34,114,282],"at":[36,244,285],"beginning":[38,287],"this":[40,289],"Supplement.":[41,290],"delivers":[44,293],"materials":[46,295],"on":[47,296],"protein":[48],"quantification":[49,90,159],"an":[51,182,306],"interactive":[52,307],"format":[53,308],"uses":[55,310],"appropriate":[56,311],"cloud":[57,312],"resources":[58,313],"data":[60,84,92,95,168,242,304,315],"access":[61,316],"and":[62,107,133,195,202,214,235,301,317],"analyses.":[63,318],"Quantitative":[64],"proteomics":[65],"rapidly":[68],"growing":[69],"discipline":[70],"due":[71],"to":[72,86,122,125,227],"cutting-edge":[74],"technologies":[75],"high":[77],"resolution":[78],"mass":[79,126,212,240],"spectrometry.":[80],"There":[81],"are":[82],"many":[83],"types":[85],"consider":[87],"proteome":[89,158],"including":[91],"dependent":[93],"acquisition,":[94,97],"independent":[96],"multiplexing":[98],"with":[99,181,189,207,221,236],"Tandem":[100],"Mass":[101],"Tag":[102],"reporter":[103,172],"ions,":[104],"spectral":[105],"counts,":[106],"more.":[108],"As":[109],"NIH":[113],"effort,":[116],"we":[117],"developed":[118],"introduce":[123],"students":[124],"spectrometry":[127,213,241],"terminology,":[128],"normalization":[129],"methods,":[130],"statistical":[131],"designs,":[132],"basics":[134,238],"R":[136,183,215],"programming.":[137],"By":[138],"utilizing":[139],"Google":[141,229],"Cloud":[142,230],"environment,":[143],"easily":[148],"accessible":[149],"without":[150],"need":[152],"complex":[154],"installation":[155],"procedures.":[156],"demonstrates":[161],"analysis":[163,198,243,298],"using":[164,170,199],"provided":[166],"TMT10plex":[167],"set":[169],"MS3":[171],"ion":[173],"intensity":[174],"quantitative":[175],"values":[176],"Jupyter":[179],"notebook":[180],"kernel.":[184],"begins":[188],"raw":[191],"intensities,":[192],"performs":[193],"normalization,":[194],"differential":[196],"abundance":[197],"limma":[200],"models,":[201],"designed":[204],"researchers":[206],"basic":[209],"understanding":[210,224],"programming":[216],"language.":[217],"Learners":[218],"walk":[219],"away":[220],"better":[223],"how":[226],"navigate":[228],"Platform":[231],"proteomic":[233],"research,":[234],"command":[246],"line.":[247],"``NIGMS":[265],"Learning''":[269],"[1]":[284],"bulk":[300],"single-cell":[302],"ATAC-seq":[303]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2024-07-24T00:00:00"}
