{"id":"https://openalex.org/W4400918460","doi":"https://doi.org/10.1093/bib/bbae232","title":"Identifying and training deep learning neural networks on biomedical-related datasets","display_name":"Identifying and training deep learning neural networks on biomedical-related datasets","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4400918460","doi":"https://doi.org/10.1093/bib/bbae232","pmid":"https://pubmed.ncbi.nlm.nih.gov/39041915"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae232","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae232/58618828/bbae232.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae232/58618828/bbae232.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044900599","display_name":"Alan E. Woessner","orcid":"https://orcid.org/0000-0001-8400-7813"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan E Woessner","raw_affiliation_strings":["University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","University of Arkansas Department of Biomedical Engineering, , Fayetteville, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Arkansas Department of Biomedical Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080248140","display_name":"Usman Anjum","orcid":"https://orcid.org/0000-0002-9280-772X"},"institutions":[{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]},{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Usman Anjum","raw_affiliation_strings":["University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","University of Cincinnati Department of Computer Science, , Cincinnati, OH"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Cincinnati Department of Computer Science, , Cincinnati, OH","institution_ids":["https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086542384","display_name":"Hadi Salman","orcid":"https://orcid.org/0000-0002-4381-6021"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hadi Salman","raw_affiliation_strings":["University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045601940","display_name":"Jacob Lear","orcid":null},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Lear","raw_affiliation_strings":["University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077615437","display_name":"Jeffrey T. Turner","orcid":null},"institutions":[{"id":"https://openalex.org/I145325580","display_name":"Deloitte (United States)","ror":"https://ror.org/03xkm6e60","country_code":"US","type":"company","lineage":["https://openalex.org/I145325580","https://openalex.org/I4210139068"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey T Turner","raw_affiliation_strings":["Health Data and AI, Deloitte Consulting LLP , Arlington VA, USA"],"affiliations":[{"raw_affiliation_string":"Health Data and AI, Deloitte Consulting LLP , Arlington VA, USA","institution_ids":["https://openalex.org/I145325580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037482151","display_name":"Ross Campbell","orcid":"https://orcid.org/0000-0003-2298-9887"},"institutions":[{"id":"https://openalex.org/I145325580","display_name":"Deloitte (United States)","ror":"https://ror.org/03xkm6e60","country_code":"US","type":"company","lineage":["https://openalex.org/I145325580","https://openalex.org/I4210139068"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross Campbell","raw_affiliation_strings":["Health Data and AI, Deloitte Consulting LLP , Arlington VA, USA"],"affiliations":[{"raw_affiliation_string":"Health Data and AI, Deloitte Consulting LLP , Arlington VA, USA","institution_ids":["https://openalex.org/I145325580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104962114","display_name":"Laura Beaudry","orcid":null},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laura Beaudry","raw_affiliation_strings":["Google Cloud , Reston VA, USA"],"affiliations":[{"raw_affiliation_string":"Google Cloud , Reston VA, USA","institution_ids":["https://openalex.org/I1291425158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101544979","display_name":"Justin Zhan","orcid":"https://orcid.org/0000-0003-4210-6279"},"institutions":[{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]},{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Zhan","raw_affiliation_strings":["University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","University of Cincinnati Department of Computer Science, , Cincinnati, OH"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Cincinnati Department of Computer Science, , Cincinnati, OH","institution_ids":["https://openalex.org/I63135867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064243731","display_name":"Lawrence E. Cornett","orcid":"https://orcid.org/0000-0002-4267-3233"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lawrence E Cornett","raw_affiliation_strings":["University of Arkansas for Medical Sciences Department of Physiology and Cell Biology, , Little Rock, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas for Medical Sciences Department of Physiology and Cell Biology, , Little Rock, AR","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032138644","display_name":"Susan Gauch","orcid":"https://orcid.org/0000-0001-5538-7343"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan Gauch","raw_affiliation_strings":["University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Department of Computer Science and Computer Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065943008","display_name":"Kyle P. Quinn","orcid":"https://orcid.org/0000-0002-6876-3608"},"institutions":[{"id":"https://openalex.org/I78715868","display_name":"University of Arkansas at Fayetteville","ror":"https://ror.org/05jbt9m15","country_code":"US","type":"education","lineage":["https://openalex.org/I78715868"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kyle P Quinn","raw_affiliation_strings":["University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","University of Arkansas Department of Biomedical Engineering, , Fayetteville, AR"],"affiliations":[{"raw_affiliation_string":"University of Arkansas Arkansas Integrative Metabolic Research Center, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]},{"raw_affiliation_string":"University of Arkansas Department of Biomedical Engineering, , Fayetteville, AR","institution_ids":["https://openalex.org/I78715868"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5065943008"],"corresponding_institution_ids":["https://openalex.org/I78715868"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":4.5076,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.93828656,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"25","issue":"Supplement_1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sandbox","display_name":"Sandbox (software development)","score":0.9194231629371643},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.824268102645874},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6835736036300659},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6567388772964478},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6078370809555054},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5128986835479736},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4262756407260895},{"id":"https://openalex.org/keywords/deep-neural-networks","display_name":"Deep neural networks","score":0.4123554527759552},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33409491181373596},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.09553766250610352}],"concepts":[{"id":"https://openalex.org/C167981075","wikidata":"https://www.wikidata.org/wiki/Q2667186","display_name":"Sandbox (software development)","level":2,"score":0.9194231629371643},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.824268102645874},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6835736036300659},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6567388772964478},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6078370809555054},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5128986835479736},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4262756407260895},{"id":"https://openalex.org/C2984842247","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep neural networks","level":3,"score":0.4123554527759552},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33409491181373596},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.09553766250610352},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bib/bbae232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae232","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae232/58618828/bbae232.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39041915","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39041915","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11264291","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11264291","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11264291/pdf/bbae232.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:scholarworks.uark.edu:cscepub-1063","is_oa":true,"landing_page_url":"https://scholarworks.uark.edu/cscepub/64","pdf_url":null,"source":{"id":"https://openalex.org/S2764830181","display_name":"Journal of the Arkansas Academy of Science","issn_l":"2326-0491","issn":["2326-0491","2326-0505"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320103","host_organization_name":"Arkansas Academy of Science","host_organization_lineage":["https://openalex.org/P4310320103"],"host_organization_lineage_names":["Arkansas Academy of Science"],"type":"journal"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computer Science and Computer Engineering Faculty Publications and Presentations","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae232","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae232","pdf_url":"https://academic.oup.com/bib/article-pdf/25/Supplement_1/bbae232/58618828/bbae232.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2596185887","display_name":null,"funder_award_id":"GM103429","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2683385012","display_name":null,"funder_award_id":"P20GM103429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3180156524","display_name":null,"funder_award_id":"P20GM10342","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G402023961","display_name":null,"funder_award_id":"R01EB031032","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4841457772","display_name":null,"funder_award_id":"P20GM139768","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5727575784","display_name":null,"funder_award_id":"103429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6685928274","display_name":null,"funder_award_id":"GM103429","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6949524355","display_name":null,"funder_award_id":"P20GM139768","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7925710999","display_name":null,"funder_award_id":"R01AG056560","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8596953837","display_name":null,"funder_award_id":"3P20GM103429-21S2","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G949673665","display_name":null,"funder_award_id":"P20GM10342","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400918460.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1686810756","https://openalex.org/W1901129140","https://openalex.org/W2101234009","https://openalex.org/W2167510172","https://openalex.org/W2194775991","https://openalex.org/W2253429366","https://openalex.org/W2311607323","https://openalex.org/W2618530766","https://openalex.org/W2775795276","https://openalex.org/W2791368556","https://openalex.org/W2803187616","https://openalex.org/W2888107234","https://openalex.org/W2914568698","https://openalex.org/W2919115771","https://openalex.org/W2991372685","https://openalex.org/W2996485613","https://openalex.org/W3097053377","https://openalex.org/W3118911822","https://openalex.org/W3140854437","https://openalex.org/W3164612304","https://openalex.org/W3204312334","https://openalex.org/W3217380390","https://openalex.org/W4205315143","https://openalex.org/W4249142012","https://openalex.org/W4296270195","https://openalex.org/W4297683907","https://openalex.org/W4317436377","https://openalex.org/W4403240373","https://openalex.org/W6631190155","https://openalex.org/W6637373629","https://openalex.org/W6639824700","https://openalex.org/W6675354045","https://openalex.org/W6684372118","https://openalex.org/W6687483927","https://openalex.org/W6698064614","https://openalex.org/W6747218270","https://openalex.org/W6751420435","https://openalex.org/W6796223860","https://openalex.org/W6851578965","https://openalex.org/W6873209535"],"related_works":["https://openalex.org/W2033352828","https://openalex.org/W2355810117","https://openalex.org/W3098313552","https://openalex.org/W4377865163","https://openalex.org/W3193857078","https://openalex.org/W2888956734","https://openalex.org/W3000197790","https://openalex.org/W4315865067","https://openalex.org/W2979433843","https://openalex.org/W3208304128"],"abstract_inverted_index":{"This":[0,42,163,238,281],"manuscript":[1,239],"describes":[2,240],"the":[3,27,32,37,82,96,183,204,218,229,241,265,270,276,287],"development":[4,242],"of":[5,12,26,39,100,140,148,206,221,231,243,250,264,278,289],"a":[6,13,244,251],"resources":[7,64,303],"module":[8,43,143,164,209,246,282],"that":[9,60,156,170,247,299],"is":[10,29,124,144,165,210,248,267],"part":[11,249],"learning":[14,45,50,109,142,150,208,252,284],"platform":[15,253],"named":[16,254],"'NIGMS":[17],"Sandbox":[18,28,35,256,266,273],"for":[19,52,65,84,234,257,304],"Cloud-based":[20,258],"Learning'":[21],"https://github.com/NIGMS/NIGMS-Sandbox.":[22,260],"The":[23,138,261],"overall":[24,262],"genesis":[25,263],"described":[30,268],"in":[31,56,75,118,160,269,295],"editorial":[33,271],"NIGMS":[34,272],"at":[36,275],"beginning":[38,277],"this":[40,141,207,279],"Supplement.":[41,280],"delivers":[44,283],"materials":[46,285],"on":[47,182,286],"implementing":[48,235],"deep":[49,108,149],"algorithms":[51],"biomedical":[53,120,161],"image":[54],"data":[55,66,226,294,305],"an":[57,115,296],"interactive":[58,297],"format":[59,298],"uses":[61,300],"appropriate":[62,301],"cloud":[63,232,302],"access":[67,306],"and":[68,78,88,98,106,131,153,175,187,191,197,216,291,307],"analyses.":[69,308],"Biomedical-related":[70],"datasets":[71,92,102],"are":[72,157],"widely":[73],"used":[74,159],"both":[76],"research":[77],"clinical":[79],"settings,":[80],"but":[81],"ability":[83],"professionally":[85],"trained":[86],"clinicians":[87],"researchers":[89],"to":[90,127,145,199,211,214],"interpret":[91],"becomes":[93],"difficult":[94],"as":[95,193,195],"size":[97],"breadth":[99],"these":[101],"increases.":[103],"Artificial":[104],"intelligence,":[105],"specifically":[107],"neural":[110,135,151,222,236],"networks,":[111],"have":[112],"recently":[113],"become":[114],"important":[116],"tool":[117],"novel":[119],"research.":[121,162],"However,":[122],"use":[123],"limited":[125],"due":[126],"their":[128,225],"computational":[129],"requirements":[130],"confusion":[132],"regarding":[133],"different":[134],"network":[136,223],"architectures.":[137],"goal":[139,205],"introduce":[146],"types":[147],"networks":[152],"cover":[154,171],"practices":[155],"commonly":[158],"subdivided":[166],"into":[167],"four":[168],"submodules":[169],"classification,":[172],"augmentation,":[173],"segmentation":[174],"regression.":[176],"Each":[177],"complementary":[178],"submodule":[179],"was":[180],"written":[181],"Google":[184],"Cloud":[185],"Platform":[186],"contains":[188],"detailed":[189],"code":[190],"explanations,":[192],"well":[194],"quizzes":[196],"challenges":[198],"facilitate":[200],"user":[201],"training.":[202],"Overall,":[203],"enable":[212],"users":[213],"identify":[215],"integrate":[217],"correct":[219],"type":[220],"with":[224],"while":[227],"highlighting":[228],"ease-of-use":[230],"computing":[233],"networks.":[237],"resource":[245],"``NIGMS":[255],"Learning''":[259],"[1]":[274],"analysis":[288],"bulk":[290],"single-cell":[292],"ATAC-seq":[293]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
