{"id":"https://openalex.org/W4396699697","doi":"https://doi.org/10.1093/bib/bbae217","title":"Removing unwanted variation between samples in Hi-C experiments","display_name":"Removing unwanted variation between samples in Hi-C experiments","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4396699697","doi":"https://doi.org/10.1093/bib/bbae217","pmid":"https://pubmed.ncbi.nlm.nih.gov/38711367"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae217","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae217/57420008/bbae217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae217/57420008/bbae217.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045190132","display_name":"Kipper Fletez\u2010Brant","orcid":"https://orcid.org/0000-0002-2817-1579"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kipper Fletez-Brant","raw_affiliation_strings":["Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health , Baltmore, MD 21205 , USA","McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine , Baltimore, MD 21205 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health , Baltmore, MD 21205 , USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine , Baltimore, MD 21205 , USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024237528","display_name":"Yunjiang Qiu","orcid":"https://orcid.org/0000-0002-0539-9714"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210150094","display_name":"Ludwig Cancer Research","ror":"https://ror.org/05qdwtz81","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yunjiang Qiu","raw_affiliation_strings":["Bioinformatics and Systems Biology Graduate Program, University of California , San Diego, La Jolla, CA 92093 , USA","Ludwig Institute for Cancer Research , New York, NY 10016 , USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Systems Biology Graduate Program, University of California , San Diego, La Jolla, CA 92093 , USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Ludwig Institute for Cancer Research , New York, NY 10016 , USA","institution_ids":["https://openalex.org/I4210150094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031125167","display_name":"David U. Gorkin","orcid":"https://orcid.org/0000-0003-4944-4107"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I4210150094","display_name":"Ludwig Cancer Research","ror":"https://ror.org/05qdwtz81","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210150094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David U Gorkin","raw_affiliation_strings":["Currently: Department of Biology. Emory University. Atlanta , GA 30322 , USA","Department of Cellular and Molecular Medicine, University of California at San Diego , La Jolla, CA 92093 , USA","Ludwig Institute for Cancer Research , New York, NY 10016 , USA"],"affiliations":[{"raw_affiliation_string":"Currently: Department of Biology. Emory University. Atlanta , GA 30322 , USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Cellular and Molecular Medicine, University of California at San Diego , La Jolla, CA 92093 , USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Ludwig Institute for Cancer Research , New York, NY 10016 , USA","institution_ids":["https://openalex.org/I4210150094"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102022832","display_name":"Ming Hu","orcid":"https://orcid.org/0000-0002-6062-8794"},"institutions":[{"id":"https://openalex.org/I1316902750","display_name":"Cleveland Clinic","ror":"https://ror.org/03xjacd83","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316902750"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ming Hu","raw_affiliation_strings":["Department of Quantitative Health Sciences, Lerner Research Institute , Cleveland Clinic Foundation, Cleveland, OH 44196 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Quantitative Health Sciences, Lerner Research Institute , Cleveland Clinic Foundation, Cleveland, OH 44196 , USA","institution_ids":["https://openalex.org/I1316902750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053857063","display_name":"Kasper D. Hansen","orcid":"https://orcid.org/0000-0003-0086-0687"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kasper D Hansen","raw_affiliation_strings":["Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health , Baltmore, MD 21205 , USA","McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine , Baltimore, MD 21205 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health , Baltmore, MD 21205 , USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine , Baltimore, MD 21205 , USA","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045190132"],"corresponding_institution_ids":["https://openalex.org/I145311948"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":2.7791,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.89981373,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9733999967575073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8782944083213806},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.618850588798523},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4702678620815277},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4212174415588379},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.40340182185173035},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3403967618942261},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30818313360214233},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07944053411483765},{"id":"https://openalex.org/keywords/astrophysics","display_name":"Astrophysics","score":0.06078916788101196}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8782944083213806},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.618850588798523},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4702678620815277},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4212174415588379},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40340182185173035},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3403967618942261},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30818313360214233},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07944053411483765},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.06078916788101196},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae217","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae217/57420008/bbae217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38711367","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38711367","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11074651","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11074651","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11074651/pdf/bbae217.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae217","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae217/57420008/bbae217.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1496202113","display_name":null,"funder_award_id":"UM1HG011585","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2228432070","display_name":null,"funder_award_id":"U24CA180996","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2395160645","display_name":null,"funder_award_id":"U54DK107977","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4108877221","display_name":null,"funder_award_id":"U24CA180996","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5017387136","display_name":null,"funder_award_id":"R35HG011922","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G502843284","display_name":null,"funder_award_id":"DK107977","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6409071814","display_name":null,"funder_award_id":"U54DK107977","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G6414754770","display_name":null,"funder_award_id":"GM121459","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6946212607","display_name":null,"funder_award_id":"R01GM121459","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G940459088","display_name":null,"funder_award_id":"R35GM149323","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306960","display_name":"A.P. Giannini Foundation","ror":"https://ror.org/01e3cnp62"},{"id":"https://openalex.org/F4320311186","display_name":"Giannini Foundation of Agricultural Economics","ror":"https://ror.org/00pjdza24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396699697.pdf"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1862913282","https://openalex.org/W1896708637","https://openalex.org/W1945579058","https://openalex.org/W1973062929","https://openalex.org/W2001576815","https://openalex.org/W2023342647","https://openalex.org/W2024103316","https://openalex.org/W2027455260","https://openalex.org/W2029530775","https://openalex.org/W2033202128","https://openalex.org/W2039521726","https://openalex.org/W2048612325","https://openalex.org/W2056482755","https://openalex.org/W2058401000","https://openalex.org/W2065776802","https://openalex.org/W2070021921","https://openalex.org/W2090037139","https://openalex.org/W2096192437","https://openalex.org/W2097798909","https://openalex.org/W2100668965","https://openalex.org/W2102368172","https://openalex.org/W2104116111","https://openalex.org/W2105778988","https://openalex.org/W2107665951","https://openalex.org/W2112087830","https://openalex.org/W2116650193","https://openalex.org/W2122982115","https://openalex.org/W2125700595","https://openalex.org/W2134074477","https://openalex.org/W2137499573","https://openalex.org/W2142270559","https://openalex.org/W2148070020","https://openalex.org/W2161212572","https://openalex.org/W2169389191","https://openalex.org/W2174466696","https://openalex.org/W2493763501","https://openalex.org/W2507209892","https://openalex.org/W2584141685","https://openalex.org/W2587589680","https://openalex.org/W2610160407","https://openalex.org/W2616052794","https://openalex.org/W2883544453","https://openalex.org/W2887206273","https://openalex.org/W2888425844","https://openalex.org/W2889291212","https://openalex.org/W2914072834","https://openalex.org/W2918443914","https://openalex.org/W2951050465","https://openalex.org/W2952940726","https://openalex.org/W2952979547","https://openalex.org/W2953095894","https://openalex.org/W2960979937","https://openalex.org/W2991011261","https://openalex.org/W3011951807","https://openalex.org/W3091034669","https://openalex.org/W4388417687","https://openalex.org/W6754147216"],"related_works":["https://openalex.org/W2386430105","https://openalex.org/W2356521405","https://openalex.org/W2038534795","https://openalex.org/W2384358604","https://openalex.org/W2591697403","https://openalex.org/W1567829292","https://openalex.org/W3001063351","https://openalex.org/W3196905815","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Hi-C":[0,43,77],"data":[1,44,78],"are":[2],"commonly":[3],"normalized":[4],"using":[5],"single":[6],"sample":[7],"processing":[8],"methods,":[9],"with":[10,45],"focus":[11],"on":[12],"comparisons":[13,85],"between":[14],"regions":[15],"within":[16],"a":[17,69,90],"given":[18],"contact":[19,26,60],"map.":[20,61],"Here,":[21],"we":[22],"aim":[23],"to":[24],"compare":[25],"maps":[27],"across":[28,58,86,100],"different":[29,48],"samples.":[30],"We":[31,62],"demonstrate":[32],"that":[33,51,81],"unwanted":[34,55],"variation,":[35],"of":[36,53,76],"likely":[37],"technical":[38],"origin,":[39],"is":[40],"present":[41,63],"in":[42,89],"replicates":[46],"from":[47],"individuals,":[49],"and":[50,66,73,79],"properties":[52],"this":[54],"variation":[56],"change":[57],"the":[59],"band-wise":[64],"normalization":[65,72],"batch":[67,74],"correction,":[68],"method":[70],"for":[71],"correction":[75],"show":[80],"it":[82],"substantially":[83],"improves":[84],"samples,":[87],"including":[88],"quantitative":[91],"trait":[92],"loci":[93],"analysis":[94],"as":[95,97],"well":[96],"differential":[98],"enrichment":[99],"cell":[101],"types.":[102]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
