{"id":"https://openalex.org/W4396663720","doi":"https://doi.org/10.1093/bib/bbae208","title":"A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy","display_name":"A two-stage computational framework for identifying antiviral peptides and their functional types based on contrastive learning and multi-feature fusion strategy","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4396663720","doi":"https://doi.org/10.1093/bib/bbae208","pmid":"https://pubmed.ncbi.nlm.nih.gov/38706321"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae208","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae208/57405303/bbae208.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae208/57405303/bbae208.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057195012","display_name":"Jiahui Guan","orcid":"https://orcid.org/0009-0003-9412-1232"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiahui Guan","raw_affiliation_strings":["Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078222868","display_name":"Lantian Yao","orcid":"https://orcid.org/0000-0003-4554-6827"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lantian Yao","raw_affiliation_strings":["School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","School of Science and Engineering, The Chinese University of Hong Kong , 2001 Longxiang Road, 518172 Shenzhen , China"],"affiliations":[{"raw_affiliation_string":"School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"School of Science and Engineering, The Chinese University of Hong Kong , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101189636","display_name":"Peilin Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peilin Xie","raw_affiliation_strings":["Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":[]},{"raw_affiliation_string":"The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067453693","display_name":"Chia\u2010Ru Chung","orcid":"https://orcid.org/0000-0002-4548-7620"},"institutions":[{"id":"https://openalex.org/I22265921","display_name":"National Central University","ror":"https://ror.org/00944ve71","country_code":"TW","type":"education","lineage":["https://openalex.org/I22265921"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Ru Chung","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Central University , 320317 Taoyuan , Taiwan"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Central University , 320317 Taoyuan , Taiwan","institution_ids":["https://openalex.org/I22265921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052405188","display_name":"Yixian Huang","orcid":"https://orcid.org/0009-0004-2601-2875"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixian Huang","raw_affiliation_strings":["School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China"],"affiliations":[{"raw_affiliation_string":"School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058640779","display_name":"Ying\u2010Chih Chiang","orcid":"https://orcid.org/0000-0002-1585-7213"},"institutions":[{"id":"https://openalex.org/I4210116924","display_name":"Chinese University of Hong Kong, Shenzhen","ror":"https://ror.org/02d5ks197","country_code":"CN","type":"education","lineage":["https://openalex.org/I177725633","https://openalex.org/I180726961","https://openalex.org/I4210116924"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying-Chih Chiang","raw_affiliation_strings":["Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, The Chinese University of Hong Kong, Shenzhen , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"The Chinese University of Hong Kong , School of Medicine, , 2001 Longxiang Road, 518172 Shenzhen , China","institution_ids":["https://openalex.org/I4210116924"]},{"raw_affiliation_string":"Kobilka Institute of Innovative Drug Discovery, School of Medicine, The Chinese University of Hong Kong, 2001 Longxiang Road, 518172 Shenzhen, China","institution_ids":["https://openalex.org/I4210116924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002567070","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0009-0002-0283-7712"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University , 300093 Hsinchu , Taiwan","Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University , 300093 Hsinchu , Taiwan"],"affiliations":[{"raw_affiliation_string":"Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University , 300093 Hsinchu , Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University , 300093 Hsinchu , Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5057195012"],"corresponding_institution_ids":["https://openalex.org/I4210116924"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":6.286,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.97213928,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8085321187973022},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5323396325111389},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49416568875312805},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4776098430156708},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.4303598701953888},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41446924209594727},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.3820270895957947},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32239285111427307},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.2603192925453186}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8085321187973022},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5323396325111389},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49416568875312805},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4776098430156708},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.4303598701953888},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41446924209594727},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3820270895957947},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32239285111427307},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.2603192925453186},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000998","descriptor_name":"Antiviral Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae208","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae208/57405303/bbae208.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38706321","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38706321","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11070730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11070730","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11070730/pdf/bbae208.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae208","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae208/57405303/bbae208.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1634587307","display_name":null,"funder_award_id":"113-2634-F-039-001","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G197686537","display_name":null,"funder_award_id":"2021A15","funder_id":"https://openalex.org/F4320326705","funder_display_name":"Science, Technology and Innovation Commission of Shenzhen Municipality"},{"id":"https://openalex.org/G2077853778","display_name":null,"funder_award_id":"13-11","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2674840903","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320006","funder_display_name":"Royal Society"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G287154221","display_name":null,"funder_award_id":"32070659","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2883950664","display_name":null,"funder_award_id":"112-2321-B-A49-016","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G2884910486","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320322724","funder_display_name":"Ministry of Education, India"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3718769366","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320322942","funder_display_name":"Chinese University of Hong Kong"},{"id":"https://openalex.org/G3757194791","display_name":null,"funder_award_id":"JCYJ20","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6258415954","display_name":null,"funder_award_id":"Chinese","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7024535418","display_name":null,"funder_award_id":"NHRI-EX113-11320BI","funder_id":"https://openalex.org/F4320322845","funder_display_name":"National Health Research Institutes"},{"id":"https://openalex.org/G7555832125","display_name":null,"funder_award_id":"JCYJ20230807114206014","funder_id":"https://openalex.org/F4320326705","funder_display_name":"Science, Technology and Innovation Commission of Shenzhen Municipality"},{"id":"https://openalex.org/G774430042","display_name":null,"funder_award_id":"113-2634-F-039-001","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G8596826850","display_name":null,"funder_award_id":"NSTC 112-2321-B-A49-016","funder_id":"https://openalex.org/F4320331164","funder_display_name":"National Science and Technology Council"},{"id":"https://openalex.org/G8800778425","display_name":null,"funder_award_id":"112-2321-B-A49-016","funder_id":"https://openalex.org/F2461203286","funder_display_name":"National Science and Technology Council"}],"funders":[{"id":"https://openalex.org/F2461203286","display_name":"National Science and Technology Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320311039","display_name":"Ministry of Higher Education and Scientific Research","ror":"https://ror.org/00kab6t91"},{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"},{"id":"https://openalex.org/F4320322845","display_name":"National Health Research Institutes","ror":"https://ror.org/02r6fpx29"},{"id":"https://openalex.org/F4320322942","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48"},{"id":"https://openalex.org/F4320326705","display_name":"Science, Technology and Innovation Commission of Shenzhen Municipality","ror":null},{"id":"https://openalex.org/F4320331164","display_name":"National Science and Technology Council","ror":"https://ror.org/00wnb9798"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396663720.pdf"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1983990793","https://openalex.org/W2024213882","https://openalex.org/W2054068479","https://openalex.org/W2064675550","https://openalex.org/W2072700935","https://openalex.org/W2094403468","https://openalex.org/W2095423661","https://openalex.org/W2097834518","https://openalex.org/W2113733844","https://openalex.org/W2131275757","https://openalex.org/W2132581719","https://openalex.org/W2143210482","https://openalex.org/W2187089797","https://openalex.org/W2255466643","https://openalex.org/W2588467130","https://openalex.org/W2739999456","https://openalex.org/W2796391117","https://openalex.org/W2798016132","https://openalex.org/W2917603237","https://openalex.org/W2946321682","https://openalex.org/W2962862931","https://openalex.org/W2962949934","https://openalex.org/W2963608065","https://openalex.org/W2965128681","https://openalex.org/W2972223935","https://openalex.org/W2987724682","https://openalex.org/W3007215678","https://openalex.org/W3018980093","https://openalex.org/W3022719572","https://openalex.org/W3026181439","https://openalex.org/W3083130172","https://openalex.org/W3086868900","https://openalex.org/W3097405028","https://openalex.org/W3126232929","https://openalex.org/W3128228480","https://openalex.org/W3136190261","https://openalex.org/W3160412534","https://openalex.org/W3168997536","https://openalex.org/W3216979156","https://openalex.org/W4225460848","https://openalex.org/W4230386810","https://openalex.org/W4282962464","https://openalex.org/W4286251201","https://openalex.org/W4287812705","https://openalex.org/W4291994084","https://openalex.org/W4295250342","https://openalex.org/W4295312788","https://openalex.org/W4298325713","https://openalex.org/W4301409532","https://openalex.org/W4309670039","https://openalex.org/W4313453841","https://openalex.org/W4381429239","https://openalex.org/W4385997203","https://openalex.org/W4389378102","https://openalex.org/W6737947904","https://openalex.org/W6742348326","https://openalex.org/W6766978945","https://openalex.org/W6775960533","https://openalex.org/W6776700526","https://openalex.org/W6777014282"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344","https://openalex.org/W2894289927"],"abstract_inverted_index":{"Antiviral":[0],"peptides":[1],"(AVPs)":[2],"have":[3,27],"shown":[4],"potential":[5],"in":[6],"inhibiting":[7],"viral":[8,11,18,151],"attachment,":[9],"preventing":[10],"fusion":[12,84],"with":[13,108],"host":[14],"cells":[15],"and":[16,42,66,82,90,97,112,125,129,159],"disrupting":[17],"replication":[19],"due":[20],"to":[21,171],"their":[22],"unique":[23],"action":[24],"mechanisms.":[25],"They":[26],"now":[28],"become":[29],"a":[30,47,61,177],"broad-spectrum,":[31],"promising":[32],"antiviral":[33,144],"therapy.":[34],"However,":[35],"identifying":[36],"effective":[37],"AVPs":[38,59,71,147],"is":[39],"traditionally":[40],"slow":[41],"costly.":[43],"This":[44,77],"study":[45],"proposed":[46],"new":[48],"two-stage":[49],"computational":[50],"framework":[51],"for":[52],"AVP":[53],"identification.":[54],"The":[55,99],"first":[56],"stage":[57,69],"identifies":[58],"from":[60],"wide":[62],"range":[63],"of":[64,102,110,118,127,132,146],"peptides,":[65],"the":[67,103,121,135],"second":[68],"recognizes":[70],"targeting":[72],"specific":[73],"families":[74,152],"or":[75],"viruses.":[76],"method":[78],"integrates":[79],"contrastive":[80],"learning":[81],"multi-feature":[83],"strategy,":[85],"focusing":[86],"on":[87,120,134],"sequence":[88],"information":[89],"peptide":[91],"characteristics,":[92],"significantly":[93],"enhancing":[94],"predictive":[95],"ability":[96],"interpretability.":[98],"evaluation":[100],"results":[101],"model":[104,141],"show":[105],"excellent":[106],"performance,":[107],"accuracy":[109,126],"0.9240":[111],"Matthews":[113],"correlation":[114],"coefficient":[115],"(MCC)":[116],"score":[117,131],"0.8482":[119],"non-AVP":[122],"independent":[123,137],"dataset,":[124],"0.9934":[128],"MCC":[130],"0.9869":[133],"non-AMP":[136],"dataset.":[138],"Furthermore,":[139],"our":[140],"can":[142],"predict":[143],"activities":[145],"against":[148],"six":[149],"key":[150],"(Coronaviridae,":[153],"Retroviridae,":[154],"Herpesviridae,":[155],"Paramyxoviridae,":[156],"Orthomyxoviridae,":[157],"Flaviviridae)":[158],"eight":[160],"viruses":[161],"(FIV,":[162],"HCV,":[163],"HIV,":[164],"HPIV3,":[165],"HSV1,":[166],"INFVA,":[167],"RSV,":[168],"SARS-CoV).":[169],"Finally,":[170],"facilitate":[172],"user":[173],"accessibility,":[174],"we":[175],"built":[176],"user-friendly":[178],"web":[179],"interface":[180],"deployed":[181],"at":[182],"https://awi.cuhk.edu.cn/\u223cdbAMP/AVP/.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":8}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
