{"id":"https://openalex.org/W4396652347","doi":"https://doi.org/10.1093/bib/bbae192","title":"SC-Track: a robust cell-tracking algorithm for generating accurate single-cell lineages from diverse cell segmentations","display_name":"SC-Track: a robust cell-tracking algorithm for generating accurate single-cell lineages from diverse cell segmentations","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4396652347","doi":"https://doi.org/10.1093/bib/bbae192","pmid":"https://pubmed.ncbi.nlm.nih.gov/38704671"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae192","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae192","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae192/57347460/bbae192.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae192/57347460/bbae192.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100357431","display_name":"Chengxin Li","orcid":"https://orcid.org/0000-0001-6490-3629"},"institutions":[{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]},{"id":"https://openalex.org/I4210158570","display_name":"Zhejiang University-University of Edinburgh Institute","ror":"https://ror.org/04jth1r26","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210158570","https://openalex.org/I76130692","https://openalex.org/I98677209"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengxin Li","raw_affiliation_strings":["Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","Department of Cardiovascular Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","Zhejiang University School of Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Haining, 314400, P. R. China","Department of Cardiovascular Medicine, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","institution_ids":["https://openalex.org/I4210158570"]},{"raw_affiliation_string":"Department of Cardiovascular Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Haining, 314400, P. R. China","institution_ids":["https://openalex.org/I4210158570"]},{"raw_affiliation_string":"Department of Cardiovascular Medicine, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, P. R. China","institution_ids":["https://openalex.org/I4210158318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111051468","display_name":"Shuang Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I4210158570","display_name":"Zhejiang University-University of Edinburgh Institute","ror":"https://ror.org/04jth1r26","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210158570","https://openalex.org/I76130692","https://openalex.org/I98677209"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuang Shuang Xie","raw_affiliation_strings":["Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","institution_ids":["https://openalex.org/I4210158570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365347","display_name":"Jiaqi Wang","orcid":"https://orcid.org/0000-0001-8841-0124"},"institutions":[{"id":"https://openalex.org/I4210158570","display_name":"Zhejiang University-University of Edinburgh Institute","ror":"https://ror.org/04jth1r26","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210158570","https://openalex.org/I76130692","https://openalex.org/I98677209"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaqi Wang","raw_affiliation_strings":["Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","institution_ids":["https://openalex.org/I4210158570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021971392","display_name":"Septavera Sharvia","orcid":null},"institutions":[{"id":"https://openalex.org/I191240316","display_name":"University of Hull","ror":"https://ror.org/04nkhwh30","country_code":"GB","type":"education","lineage":["https://openalex.org/I191240316"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Septavera Sharvia","raw_affiliation_strings":["Department of Computer Science, University of Hull , Hull, HU6 7RX , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hull , Hull, HU6 7RX , UK","institution_ids":["https://openalex.org/I191240316"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061768834","display_name":"Kuan Yoow Chan","orcid":"https://orcid.org/0000-0002-5974-1650"},"institutions":[{"id":"https://openalex.org/I4210158318","display_name":"Second Affiliated Hospital of Zhejiang University","ror":"https://ror.org/059cjpv64","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210158318"]},{"id":"https://openalex.org/I4210158570","display_name":"Zhejiang University-University of Edinburgh Institute","ror":"https://ror.org/04jth1r26","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210158570","https://openalex.org/I76130692","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CN","GB"],"is_corresponding":true,"raw_author_name":"Kuan Yoow Chan","raw_affiliation_strings":["Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","College of Medicine and Veterinary Medicine, The University of Edinburgh , Edinburgh, EH4 2XR , UK","Department of Cardiovascular Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","Zhejiang University School of Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Haining, 314400, P. R. China","Department of Cardiovascular Medicine, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, P. R. China"],"raw_orcid":"https://orcid.org/0000-0002-5974-1650","affiliations":[{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University , Haining, 314400 , P. R. China","institution_ids":["https://openalex.org/I4210158570"]},{"raw_affiliation_string":"College of Medicine and Veterinary Medicine, The University of Edinburgh , Edinburgh, EH4 2XR , UK","institution_ids":["https://openalex.org/I98677209"]},{"raw_affiliation_string":"Department of Cardiovascular Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Zhejiang University School of Medicine , The Second Affiliated Hospital, , Hangzhou, 310058 , P. R. China","institution_ids":["https://openalex.org/I4210158318"]},{"raw_affiliation_string":"Centre for Cellular Biology and Signalling, Zhejiang University-University of Edinburgh Institute, Zhejiang University School of Medicine, Zhejiang University, Haining, 314400, P. R. China","institution_ids":["https://openalex.org/I4210158570"]},{"raw_affiliation_string":"Department of Cardiovascular Medicine, The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, 310058, P. R. China","institution_ids":["https://openalex.org/I4210158318"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061768834"],"corresponding_institution_ids":["https://openalex.org/I4210158318","https://openalex.org/I4210158570","https://openalex.org/I98677209"],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":1.032,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.81581774,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7416175603866577},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6544995307922363},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6512712240219116},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6173274517059326},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4720875918865204},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.46369752287864685},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.46115732192993164},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3771182894706726}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7416175603866577},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6544995307922363},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6512712240219116},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6173274517059326},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4720875918865204},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.46369752287864685},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.46115732192993164},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3771182894706726},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bib/bbae192","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae192","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae192/57347460/bbae192.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38704671","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38704671","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:hull-repository.worktribe.com:4630783","is_oa":true,"landing_page_url":"https://hull-repository.worktribe.com/output/4630783","pdf_url":"https://hull-repository.worktribe.com/file/4630783/1/Published%20article","source":{"id":"https://openalex.org/S4306400827","display_name":"Repository@Hull (Worktribe) (University of Hull)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I191240316","host_organization_name":"University of Hull","host_organization_lineage":["https://openalex.org/I191240316"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11070058","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11070058","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11070058/pdf/bbae192.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/7a242d04-fa66-4b8b-adab-ffc32fe4245b","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/7a242d04-fa66-4b8b-adab-ffc32fe4245b","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Li, C, Xie, S S, Wang, J, Sharvia, S & Chan, K Y 2024, 'SC-Track : a robust cell-tracking algorithm for generating accurate single-cell lineages from diverse cell segmentations', Briefings in Bioinformatics, vol. 25, no. 3, bbae192. https://doi.org/10.1093/bib/bbae192","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae192","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae192","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae192/57347460/bbae192.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1982101556","display_name":null,"funder_award_id":"2019QN30001","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320322927","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396652347.pdf"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1521019969","https://openalex.org/W1901129140","https://openalex.org/W1986616568","https://openalex.org/W2065782380","https://openalex.org/W2105916176","https://openalex.org/W2124781496","https://openalex.org/W2148743296","https://openalex.org/W2159498975","https://openalex.org/W2511791013","https://openalex.org/W2529052661","https://openalex.org/W2554348690","https://openalex.org/W2583735516","https://openalex.org/W2603712266","https://openalex.org/W2788562687","https://openalex.org/W2807674850","https://openalex.org/W2900936384","https://openalex.org/W2946901414","https://openalex.org/W2950501364","https://openalex.org/W2961912654","https://openalex.org/W2981630388","https://openalex.org/W3003623648","https://openalex.org/W3006926844","https://openalex.org/W3014743289","https://openalex.org/W3048087138","https://openalex.org/W3100296314","https://openalex.org/W3111521801","https://openalex.org/W4223997639","https://openalex.org/W4281665512","https://openalex.org/W4294128155","https://openalex.org/W4308361273","https://openalex.org/W4377019739","https://openalex.org/W4379016122","https://openalex.org/W6639824700","https://openalex.org/W6725558437","https://openalex.org/W6748888414","https://openalex.org/W6769508662","https://openalex.org/W6773734133","https://openalex.org/W6785136195","https://openalex.org/W7063556251"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W2084086966","https://openalex.org/W4321487865","https://openalex.org/W4313906399","https://openalex.org/W4391266461","https://openalex.org/W2590798552","https://openalex.org/W2811106690","https://openalex.org/W4239306820","https://openalex.org/W2023861399","https://openalex.org/W2158788032"],"abstract_inverted_index":{"Computational":[0],"analysis":[1],"of":[2,106,122,131,181],"fluorescent":[3],"timelapse":[4],"microscopy":[5],"images":[6],"at":[7],"the":[8,30,179],"single-cell":[9,79,215],"level":[10],"is":[11,29,72,169],"a":[12,53,73,86,96,120,128,172,195],"powerful":[13],"approach":[14,28],"to":[15,26,32,56,64,76,177,212],"study":[16],"cellular":[17],"changes":[18],"that":[19,115,150,199],"dictate":[20],"important":[21],"cell":[22,35,67,107,125,132,158,161,173,182,186,204],"fate":[23],"decisions.":[24],"Core":[25],"this":[27],"need":[31],"generate":[33,213],"reliable":[34],"segmentations":[36,68],"and":[37,69,109,164,207,217],"classifications":[38,183],"necessary":[39],"for":[40],"accurate":[41,78,214],"quantitative":[42],"analysis.":[43],"Deep":[44],"learning-based":[45],"convolutional":[46],"neural":[47],"networks":[48],"(CNNs)":[49],"have":[50],"emerged":[51],"as":[52],"promising":[54],"solution":[55],"these":[57],"challenges.":[58],"However,":[59],"current":[60],"CNNs":[61,211],"are":[62],"prone":[63],"produce":[65],"noisy":[66,203],"classifications,":[70],"which":[71,94],"significant":[74],"barrier":[75],"constructing":[77],"lineages.":[80],"To":[81],"address":[82],"this,":[83],"we":[84],"developed":[85],"novel":[87],"algorithm":[88,149,198],"called":[89],"Single":[90],"Cell":[91],"Track":[92],"(SC-Track),":[93],"employs":[95],"hierarchical":[97],"probabilistic":[98],"cache":[99],"cascade":[100],"model":[101],"based":[102],"on":[103,127],"biological":[104],"observations":[105],"division":[108],"movement":[110],"dynamics.":[111],"Our":[112],"results":[113],"show":[114],"SC-Track":[116,145,168,194],"performs":[117],"better":[118],"than":[119],"panel":[121],"publicly":[123],"available":[124],"trackers":[126],"diverse":[129],"set":[130],"segmentation":[133,159,187,206],"types.":[134],"This":[135],"cell-tracking":[136,154,197],"performance":[137,155],"was":[138],"achieved":[139],"without":[140],"any":[141],"parameter":[142],"adjustments,":[143],"making":[144],"an":[146],"excellent":[147],"generalized":[148],"can":[151],"maintain":[152],"robust":[153,196],"in":[156,184],"varying":[157],"qualities,":[160],"morphological":[162],"appearances":[163],"imaging":[165],"conditions.":[166],"Furthermore,":[167],"equipped":[170],"with":[171,202],"class":[174],"correction":[175],"function":[176],"improve":[178],"accuracy":[180],"multiclass":[185],"time":[188],"series.":[189],"These":[190],"features":[191],"together":[192],"make":[193],"works":[200],"well":[201],"instance":[205],"classification":[208],"predictions":[209],"from":[210],"lineages":[216],"classifications.":[218]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
