{"id":"https://openalex.org/W4395660270","doi":"https://doi.org/10.1093/bib/bbae184","title":"Prior knowledge-guided multilevel graph neural network for tumor risk prediction and interpretation via multi-omics data integration","display_name":"Prior knowledge-guided multilevel graph neural network for tumor risk prediction and interpretation via multi-omics data integration","publication_year":2024,"publication_date":"2024-03-27","ids":{"openalex":"https://openalex.org/W4395660270","doi":"https://doi.org/10.1093/bib/bbae184","pmid":"https://pubmed.ncbi.nlm.nih.gov/38670157"},"language":"en","primary_location":{"id":"doi:10.1093/bib/bbae184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae184","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae184/57330679/bbae184.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae184/57330679/bbae184.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102024122","display_name":"H.H. Yan","orcid":"https://orcid.org/0009-0007-6623-6680"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongxi Yan","raw_affiliation_strings":["Department of Computer Science, Beihang University , XueYuan Road, 100191, BeiJing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Beihang University , XueYuan Road, 100191, BeiJing , China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021265820","display_name":"Dawei Weng","orcid":null},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dawei Weng","raw_affiliation_strings":["School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China","institution_ids":["https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103067399","display_name":"Dongguo Li","orcid":"https://orcid.org/0000-0001-6327-8315"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongguo Li","raw_affiliation_strings":["School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China","institution_ids":["https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100706697","display_name":"Yu Gu","orcid":"https://orcid.org/0000-0003-0073-1383"},"institutions":[{"id":"https://openalex.org/I183519381","display_name":"Capital Medical University","ror":"https://ror.org/013xs5b60","country_code":"CN","type":"education","lineage":["https://openalex.org/I183519381"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Gu","raw_affiliation_strings":["School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Capital Medical University , 10 You An Men WaiXi Tou Tiao, 100069, Beijing , China","institution_ids":["https://openalex.org/I183519381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102377372","display_name":"Wenji Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenji Ma","raw_affiliation_strings":["Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine , 227 South Chongqing Road, 200025, Shanghai , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Single-Cell Omics, School of Public Health, Shanghai Jiao Tong University School of Medicine , 227 South Chongqing Road, 200025, Shanghai , China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056847110","display_name":"Qingjie Liu","orcid":"https://orcid.org/0000-0002-5181-6451"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingjie Liu","raw_affiliation_strings":["Department of Computer Science, Beihang University , XueYuan Road, 100191, BeiJing , China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Beihang University , XueYuan Road, 100191, BeiJing , China","institution_ids":["https://openalex.org/I82880672"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4011,"currency":"USD","value_usd":4011},"apc_paid":{"value":4011,"currency":"USD","value_usd":4011},"fwci":5.891,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.97380807,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"25","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6474297046661377},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5634534955024719},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5538100004196167},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5121409893035889},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5065881013870239},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45083582401275635},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3914393484592438},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31720876693725586},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.11808350682258606}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6474297046661377},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5634534955024719},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5538100004196167},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5121409893035889},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5065881013870239},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45083582401275635},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3914393484592438},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31720876693725586},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.11808350682258606},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bib/bbae184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae184","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae184/57330679/bbae184.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38670157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38670157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11052635","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11052635","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11052635/pdf/bbae184.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brief Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bib/bbae184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bib/bbae184","pdf_url":"https://academic.oup.com/bib/article-pdf/25/3/bbae184/57330679/bbae184.pdf","source":{"id":"https://openalex.org/S91767247","display_name":"Briefings in Bioinformatics","issn_l":"1467-5463","issn":["1467-5463","1477-4054"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Briefings in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3191554489","display_name":null,"funder_award_id":"2020QNRC001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3852078645","display_name":null,"funder_award_id":"STI2030","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7693426446","display_name":null,"funder_award_id":"61806010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8420029644","display_name":null,"funder_award_id":"2022YFC3502500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8603200482","display_name":null,"funder_award_id":"2020QNRC001","funder_id":"https://openalex.org/F4320311778","funder_display_name":"China Association for Science and Technology"},{"id":"https://openalex.org/G8812853043","display_name":null,"funder_award_id":"32100512","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G931949476","display_name":null,"funder_award_id":"L232103","funder_id":"https://openalex.org/F4320322919","funder_display_name":"Natural Science Foundation of Beijing Municipality"}],"funders":[{"id":"https://openalex.org/F4320311778","display_name":"China Association for Science and Technology","ror":"https://ror.org/035vmht26"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322919","display_name":"Natural Science Foundation of Beijing Municipality","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4395660270.pdf","grobid_xml":"https://content.openalex.org/works/W4395660270.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1578104218","https://openalex.org/W2009405916","https://openalex.org/W2059773010","https://openalex.org/W2078370799","https://openalex.org/W2082290707","https://openalex.org/W2130854041","https://openalex.org/W2163480486","https://openalex.org/W2329659234","https://openalex.org/W2611138580","https://openalex.org/W2616922646","https://openalex.org/W2790179710","https://openalex.org/W2799553023","https://openalex.org/W2900569176","https://openalex.org/W2944869129","https://openalex.org/W2951029718","https://openalex.org/W2955502047","https://openalex.org/W2957990707","https://openalex.org/W2962858109","https://openalex.org/W2970119293","https://openalex.org/W2972317931","https://openalex.org/W2996872173","https://openalex.org/W3005188734","https://openalex.org/W3021338900","https://openalex.org/W3034288498","https://openalex.org/W3036962145","https://openalex.org/W3118330430","https://openalex.org/W3121756359","https://openalex.org/W3123507371","https://openalex.org/W3133606085","https://openalex.org/W3133653953","https://openalex.org/W3158221061","https://openalex.org/W3182145057","https://openalex.org/W3184356625","https://openalex.org/W3194337034","https://openalex.org/W3199772305","https://openalex.org/W3209038539","https://openalex.org/W4206804332","https://openalex.org/W4207068394","https://openalex.org/W4223557148","https://openalex.org/W4225278475","https://openalex.org/W4293104168","https://openalex.org/W4294558607","https://openalex.org/W4297382430","https://openalex.org/W4312068919","https://openalex.org/W4363651657","https://openalex.org/W4376643505","https://openalex.org/W4385409470","https://openalex.org/W6670319248","https://openalex.org/W6734194636","https://openalex.org/W6738964360","https://openalex.org/W6742297177","https://openalex.org/W6762832027","https://openalex.org/W6765165363","https://openalex.org/W6766263406","https://openalex.org/W6767288045","https://openalex.org/W6767583514","https://openalex.org/W6791775352","https://openalex.org/W6800329073","https://openalex.org/W6845605015"],"related_works":["https://openalex.org/W4313320911","https://openalex.org/W4327743144","https://openalex.org/W4245077728","https://openalex.org/W2607424049","https://openalex.org/W4390922876","https://openalex.org/W3183204001","https://openalex.org/W4206302830","https://openalex.org/W2185941092","https://openalex.org/W4386782890","https://openalex.org/W3210948575"],"abstract_inverted_index":{"The":[0,45,151],"interrelation":[1],"and":[2,29,53,60,70,100,106,140,147,154,170],"complementary":[3],"nature":[4],"of":[5,42,74,165],"multi-omics":[6,68,95],"data":[7,27,69],"can":[8],"provide":[9],"valuable":[10],"insights":[11],"into":[12],"the":[13,40,75,128,176],"intricate":[14],"molecular":[15],"mechanisms":[16],"underlying":[17],"diseases.":[18],"However,":[19],"challenges":[20],"such":[21,48,167],"as":[22,49,168],"limited":[23],"sample":[24],"size,":[25],"high":[26],"dimensionality":[28],"differences":[30],"in":[31,109,161,175],"omics":[32],"modalities":[33],"pose":[34],"significant":[35],"obstacles":[36],"to":[37,103],"fully":[38],"harnessing":[39],"potential":[41],"these":[43],"data.":[44],"prior":[46,76],"knowledge":[47],"gene":[50,61,97,146],"regulatory":[51,98],"network":[52,84],"pathway":[54,101,148],"information":[55,102],"harbors":[56],"useful":[57],"gene-gene":[58],"interaction":[59],"functional":[62],"module":[63],"information.":[64],"To":[65],"effectively":[66],"integrate":[67],"make":[71],"full":[72],"use":[73],"knowledge,":[77],"here,":[78],"we":[79],"propose":[80],"a":[81,86],"Multilevel-graph":[82],"neural":[83,143],"(GNN):":[85],"hierarchically":[87],"designed":[88],"deep":[89],"learning":[90],"algorithm":[91],"that":[92],"sequentially":[93],"leverages":[94],"data,":[96],"networks":[99],"extract":[104],"features":[105],"enhance":[107],"accuracy":[108,117],"predicting":[110],"survival":[111,162],"risk.":[112],"Our":[113],"method":[114],"achieved":[115],"better":[116],"compared":[118],"with":[119,127,159],"existing":[120],"methods.":[121],"Furthermore,":[122],"key":[123],"factors":[124],"nonlinearly":[125],"associated":[126],"tumor":[129],"pathogenesis":[130],"are":[131,172],"prioritized":[132],"by":[133],"employing":[134],"two":[135],"interpretation":[136],"algorithms":[137],"(i.e.":[138],"GNN-Explainer":[139],"IGscore)":[141],"for":[142],"networks,":[144],"at":[145],"level,":[149],"respectively.":[150],"top":[152],"genes":[153],"pathways":[155],"exhibit":[156],"strong":[157],"associations":[158],"disease":[160],"analyses,":[163],"many":[164],"which":[166],"SEC61G":[169],"CYP27B1":[171],"previously":[173],"reported":[174],"literature.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
